==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA POLYMERASE SIGMA FACTOR RPON/DNA 13-DEC-06 2O9L . COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR RPON; . SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; . AUTHOR M.DOUCLEFF,J.G.PELTON,P.S.LEE,D.E.WEMMER . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4899.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 52.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 36.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A H 0 0 151 0, 0.0 40,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-179.5 -10.2 11.8 -0.3 2 2 A M + 0 0 177 1,-0.1 39,-0.0 2,-0.0 37,-0.0 0.801 360.0 174.4 52.5 37.3 -12.2 11.6 -3.6 3 3 A L - 0 0 46 36,-0.1 -1,-0.1 1,-0.1 36,-0.0 0.082 29.3 -92.4 -65.7 174.2 -9.1 12.3 -5.8 4 4 A T - 0 0 79 1,-0.1 4,-0.2 0, 0.0 3,-0.1 0.133 65.8 -59.8 -71.2-168.9 -8.6 12.3 -9.6 5 5 A Q S S- 0 0 188 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.710 129.4 -15.7 -48.5 -25.2 -7.5 9.5 -11.9 6 6 A G S > S+ 0 0 2 3,-0.1 4,-1.6 2,-0.0 -1,-0.2 0.226 75.7 146.4-173.7 40.1 -4.2 9.4 -9.8 7 7 A E T 4 S+ 0 0 73 1,-0.3 -2,-0.1 2,-0.2 32,-0.0 0.674 97.5 29.0 -62.0 -14.1 -3.6 12.5 -7.6 8 8 A L T >> S+ 0 0 9 -4,-0.2 4,-1.4 3,-0.1 3,-0.5 0.558 116.7 63.1-111.3 -16.9 -2.0 10.0 -5.1 9 9 A M H >> S+ 0 0 55 1,-0.2 4,-0.8 2,-0.2 3,-0.7 0.997 104.2 41.2 -67.6 -67.1 -0.8 7.4 -7.7 10 10 A K H 3< S+ 0 0 123 -4,-1.6 -1,-0.2 1,-0.2 -3,-0.1 0.155 119.8 50.1 -74.4 18.8 1.7 9.5 -9.8 11 11 A L H <> S+ 0 0 39 -3,-0.5 4,-1.3 -2,-0.2 5,-0.4 0.589 91.0 68.4-128.8 -38.4 3.0 11.1 -6.5 12 12 A I H X S+ 0 0 37 -4,-1.3 3,-1.8 -3,-0.1 4,-1.1 0.762 119.8 52.1-104.3 -46.3 8.6 11.7 -3.9 16 16 A V H 3< S+ 0 0 12 -4,-1.3 3,-0.5 -5,-0.4 4,-0.4 0.887 111.8 47.0 -64.7 -35.8 9.7 8.4 -2.2 17 17 A E T 3< S+ 0 0 65 -4,-1.0 -1,-0.3 1,-0.2 4,-0.1 0.437 115.0 50.0 -83.7 5.1 12.1 7.6 -5.1 18 18 A N T <4 S+ 0 0 114 -3,-1.8 -2,-0.2 2,-0.1 -1,-0.2 0.530 109.7 47.2-112.3 -16.3 13.4 11.2 -4.8 19 19 A E S < S- 0 0 110 -4,-1.1 2,-0.3 -3,-0.5 -3,-0.1 0.887 124.0 -23.5 -94.7 -86.8 14.1 11.5 -1.0 20 20 A D > + 0 0 72 -4,-0.4 3,-1.9 3,-0.2 -2,-0.1 -0.733 48.6 175.4-139.7 85.1 16.0 8.6 0.7 21 21 A K T 3 S+ 0 0 121 -2,-0.3 -1,-0.1 1,-0.3 -4,-0.1 0.681 89.3 57.9 -59.4 -18.0 15.8 5.2 -1.2 22 22 A R T 3 S+ 0 0 202 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.0 0.482 117.1 32.6 -87.7 -7.9 18.3 4.0 1.6 23 23 A K S < S- 0 0 125 -3,-1.9 -1,-0.2 39,-0.0 -3,-0.2 -0.592 91.5-165.4-146.7 71.1 15.7 4.9 4.3 24 24 A P - 0 0 33 0, 0.0 -3,-0.1 0, 0.0 34,-0.0 -0.120 14.2-124.1 -69.4 160.5 12.2 4.4 2.8 25 25 A Y - 0 0 68 1,-0.0 2,-0.3 -9,-0.0 34,-0.1 -0.100 24.5-130.9 -76.6-174.3 8.8 5.5 4.0 26 26 A S > - 0 0 57 32,-0.1 4,-2.9 33,-0.0 5,-0.4 -0.873 32.7 -91.6-134.0 169.6 5.7 3.2 4.7 27 27 A D H > S+ 0 0 46 -2,-0.3 4,-1.3 1,-0.2 19,-0.1 0.840 129.5 46.7 -55.6 -31.3 2.0 3.1 3.7 28 28 A Q H > S+ 0 0 104 2,-0.2 4,-1.9 3,-0.1 -1,-0.2 0.960 114.0 46.2 -68.2 -54.4 1.3 5.1 7.0 29 29 A E H > S+ 0 0 95 1,-0.2 4,-1.9 2,-0.2 3,-0.3 0.943 114.1 46.1 -62.2 -47.5 4.2 7.6 6.4 30 30 A I H X S+ 0 0 11 -4,-2.9 4,-1.6 1,-0.2 -1,-0.2 0.903 111.4 53.9 -59.6 -38.7 3.3 8.3 2.7 31 31 A A H < S+ 0 0 4 -4,-1.3 4,-0.5 -5,-0.4 10,-0.3 0.872 108.8 51.2 -62.2 -35.0 -0.4 8.7 3.7 32 32 A N H >< S+ 0 0 59 -4,-1.9 3,-1.4 -3,-0.3 4,-0.4 0.954 108.8 45.3 -68.2 -54.3 0.6 11.3 6.3 33 33 A I H >< S+ 0 0 39 -4,-1.9 3,-1.6 1,-0.3 4,-0.4 0.863 105.8 63.1 -63.2 -32.9 2.7 13.7 4.2 34 34 A L T 3X>S+ 0 0 0 -4,-1.6 5,-2.4 1,-0.3 6,-1.5 0.717 97.4 58.3 -63.3 -20.1 0.0 13.5 1.4 35 35 A K T <45S+ 0 0 112 -3,-1.4 -1,-0.3 -4,-0.5 -2,-0.2 0.632 98.0 60.8 -81.5 -14.9 -2.4 15.2 4.0 36 36 A E T <45S+ 0 0 147 -3,-1.6 -1,-0.2 -4,-0.4 -2,-0.2 0.586 113.6 31.4 -88.2 -11.7 -0.0 18.2 4.3 37 37 A K T 45S- 0 0 106 -4,-0.4 -2,-0.2 -3,-0.4 -3,-0.1 0.690 127.0 -66.9-129.1 -27.3 -0.2 19.3 0.6 38 38 A G T <5S+ 0 0 40 -4,-1.3 -3,-0.2 3,-0.0 -4,-0.1 0.476 106.4 81.1 163.8 6.2 -3.6 18.4 -0.8 39 39 A F < - 0 0 25 -5,-2.4 -4,-0.2 -6,-0.1 -36,-0.1 0.847 52.6-171.3 -99.3 -39.9 -4.5 14.7 -1.1 40 40 A K + 0 0 129 -6,-1.5 2,-0.3 1,-0.2 -5,-0.2 0.847 26.3 160.7 37.8 51.1 -5.5 13.7 2.4 41 41 A V - 0 0 10 -10,-0.3 -1,-0.2 -40,-0.1 2,-0.1 -0.763 33.2-127.8 -91.7 139.9 -5.6 10.0 1.5 42 42 A A >> - 0 0 51 -2,-0.3 4,-1.9 -8,-0.1 3,-0.9 -0.399 25.9-101.8 -84.1 165.6 -5.5 7.3 4.3 43 43 A R H 3> S+ 0 0 102 1,-0.2 4,-1.6 2,-0.2 5,-0.2 0.747 114.7 65.8 -62.6 -26.6 -3.1 4.3 4.6 44 44 A R H 3> S+ 0 0 181 2,-0.2 4,-0.8 1,-0.2 -1,-0.2 0.850 110.6 35.4 -67.8 -34.4 -5.8 1.8 3.3 45 45 A T H <> S+ 0 0 57 -3,-0.9 4,-1.0 2,-0.2 -2,-0.2 0.882 114.3 53.8 -84.9 -47.5 -5.8 3.4 -0.1 46 46 A V H X S+ 0 0 0 -4,-1.9 4,-2.4 1,-0.2 5,-0.2 0.813 106.3 55.2 -66.8 -28.3 -2.2 4.3 -0.5 47 47 A A H X S+ 0 0 11 -4,-1.6 4,-1.2 1,-0.2 -1,-0.2 0.919 106.9 49.5 -64.0 -47.4 -1.2 0.7 0.3 48 48 A K H X S+ 0 0 136 -4,-0.8 4,-0.8 2,-0.2 -2,-0.2 0.674 112.4 51.0 -67.9 -18.3 -3.4 -0.6 -2.5 49 49 A Y H X S+ 0 0 57 -4,-1.0 4,-2.5 2,-0.2 3,-0.5 0.919 103.8 51.3 -89.6 -50.4 -1.7 2.0 -4.8 50 50 A R H X>S+ 0 0 54 -4,-2.4 5,-2.0 1,-0.2 4,-1.1 0.814 111.8 54.8 -57.9 -22.3 2.0 1.3 -4.2 51 51 A E H <5S+ 0 0 136 -4,-1.2 -1,-0.2 -5,-0.2 -2,-0.2 0.889 112.0 39.8 -69.5 -44.2 0.8 -2.3 -5.0 52 52 A M H <5S+ 0 0 104 -4,-0.8 -2,-0.2 -3,-0.5 -3,-0.1 0.802 113.6 52.8 -83.3 -31.6 -0.7 -1.4 -8.4 53 53 A L H <5S- 0 0 59 -4,-2.5 -3,-0.1 2,-0.1 -2,-0.1 0.988 125.1 -87.4 -65.6 -63.5 2.1 1.1 -9.6 54 54 A G T <5S+ 0 0 63 -4,-1.1 -3,-0.2 -5,-0.2 -4,-0.1 0.445 79.6 127.5 170.0 8.1 5.0 -1.4 -9.0 55 55 A I < - 0 0 15 -5,-2.0 -1,-0.1 -6,-0.2 -2,-0.1 -0.732 35.5-166.1 -91.0 125.2 6.4 -1.3 -5.4 56 56 A P S S- 0 0 60 0, 0.0 -1,-0.2 0, 0.0 -6,-0.0 0.973 77.9 -62.0 -69.7 -53.2 6.8 -4.6 -3.4 57 57 A S - 0 0 45 -7,-0.0 2,-0.3 -31,-0.0 -2,-0.1 0.273 51.7-128.5-158.9 -11.0 7.3 -2.6 -0.1 58 58 A S S > S+ 0 0 12 1,-0.1 4,-1.9 -34,-0.0 5,-0.1 0.005 102.2 80.4 61.7 -18.4 10.5 -0.5 -0.7 59 59 A R H > S+ 0 0 183 -2,-0.3 4,-2.4 2,-0.2 -1,-0.1 0.913 94.9 45.4 -67.1 -42.0 11.8 -2.0 2.7 60 60 A E H 4 S+ 0 0 118 1,-0.2 -1,-0.2 2,-0.2 0, 0.0 0.756 112.9 50.2 -76.4 -25.1 12.7 -5.2 0.8 61 61 A R H 4 S+ 0 0 112 2,-0.1 -1,-0.2 1,-0.1 -2,-0.2 0.866 117.3 41.0 -72.2 -42.8 14.3 -3.0 -2.0 62 62 A R H < 0 0 121 -4,-1.9 -2,-0.2 1,-0.1 -3,-0.2 0.940 360.0 360.0 -69.5 -58.8 16.4 -1.0 0.5 63 63 A I < 0 0 171 -4,-2.4 -3,-0.1 -5,-0.1 -1,-0.1 0.786 360.0 360.0 -55.0 360.0 17.6 -3.7 3.1