==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER OXIDOREDUCTASE 27-DEC-06 2ODX . COMPND 2 MOLECULE: CYTOCHROME C OXIDASE POLYPEPTIDE IV; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR J.H.COYNE III,S.CIOFI-BAFFONI . 54 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3693.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 14.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 94 A M 0 0 161 0, 0.0 47,-0.0 0, 0.0 39,-0.0 0.000 360.0 360.0 360.0 4.2 -6.4 -7.7 0.5 2 95 A K - 0 0 156 1,-0.1 0, 0.0 45,-0.0 0, 0.0 0.951 360.0 -46.7 -73.1 -61.9 -5.0 -10.6 2.5 3 96 A D S S+ 0 0 78 44,-0.1 3,-0.1 46,-0.1 -1,-0.1 -0.500 76.2 151.7 167.7 74.5 -1.5 -9.4 3.4 4 97 A P + 0 0 54 0, 0.0 2,-0.3 0, 0.0 44,-0.1 0.855 68.0 0.8 -92.1 -51.2 0.3 -7.9 0.2 5 98 A I S S- 0 0 67 2,-0.0 44,-2.3 41,-0.0 2,-0.4 -0.951 71.6-129.6-149.2 143.3 2.8 -5.3 1.4 6 99 A I E -a 49 0A 87 -2,-0.3 2,-0.5 42,-0.2 44,-0.2 -0.908 12.1-166.4-113.7 131.7 3.6 -4.3 5.0 7 100 A I E -a 50 0A 36 42,-2.2 44,-0.9 -2,-0.4 2,-0.4 -0.979 23.3-136.6-116.3 111.3 3.7 -0.7 6.4 8 101 A E + 0 0 123 -2,-0.5 42,-0.1 1,-0.2 -2,-0.0 -0.599 37.2 163.9 -76.8 116.3 5.4 -0.7 9.8 9 102 A S - 0 0 0 -2,-0.4 -1,-0.2 42,-0.3 3,-0.1 0.931 36.3-161.6-108.2 -67.8 3.2 1.6 11.8 10 103 A Y S S+ 0 0 124 43,-0.6 2,-0.3 41,-0.4 -2,-0.1 0.275 82.2 77.6 75.8 -3.9 3.3 1.9 15.7 11 104 A D S S- 0 0 54 40,-0.1 3,-0.5 43,-0.1 -1,-0.2 -0.943 84.8-132.1-114.2 152.3 -0.1 3.5 15.3 12 105 A D S S+ 0 0 82 -2,-0.3 23,-3.1 1,-0.2 24,-0.3 0.656 102.3 31.9 -72.3 -14.6 -3.3 1.4 14.6 13 106 A Y S S+ 0 0 142 21,-0.3 -1,-0.2 22,-0.1 21,-0.0 0.263 84.2 151.6-134.0 6.5 -4.5 3.7 11.7 14 107 A R - 0 0 99 -3,-0.5 -7,-0.1 1,-0.1 -4,-0.1 0.070 37.6-119.6 -62.0 154.8 -1.4 5.2 9.9 15 108 A Y - 0 0 140 17,-0.2 2,-0.3 -6,-0.1 17,-0.3 -0.212 19.8-146.7 -77.1 171.6 -0.9 6.3 6.3 16 109 A V E -C 31 0B 8 15,-2.5 15,-2.1 -2,-0.0 2,-0.4 -0.981 4.1-152.8-135.6 149.0 1.5 5.1 3.6 17 110 A G E +C 30 0B 39 -2,-0.3 2,-0.3 13,-0.2 13,-0.2 -0.972 22.5 170.0-119.6 121.4 3.4 6.6 0.7 18 111 A C E -C 29 0B 12 11,-0.8 11,-1.7 -2,-0.4 -2,-0.0 -0.832 32.3-161.3-114.6 160.6 4.4 4.5 -2.3 19 112 A T S S- 0 0 47 -2,-0.3 7,-2.7 2,-0.3 9,-0.1 0.147 71.6 -83.1-114.9 13.4 5.8 5.2 -5.8 20 113 A G S S- 0 0 14 5,-0.2 8,-0.1 4,-0.2 21,-0.0 -0.024 99.1 -17.0 118.5 -31.2 4.7 1.8 -7.1 21 114 A S S > S- 0 0 48 5,-0.0 3,-0.7 1,-0.0 4,-0.3 -0.882 85.2 -79.1 169.5 159.9 7.6 -0.3 -5.9 22 115 A P T 3 S+ 0 0 145 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 0.723 124.0 76.7 -54.9 -20.6 11.2 0.3 -4.6 23 116 A A T 3 S- 0 0 75 1,-0.1 0, 0.0 -3,-0.0 0, 0.0 -0.292 107.7-121.3 -91.7 42.4 11.7 0.7 -8.4 24 117 A G < + 0 0 53 -3,-0.7 -4,-0.2 -2,-0.3 -1,-0.1 0.565 51.8 162.7 51.3 33.9 10.2 4.2 -8.6 25 118 A S + 0 0 82 -4,-0.3 -5,-0.2 2,-0.0 -1,-0.1 0.883 53.8 4.2 -75.7 -48.0 7.5 3.1 -11.1 26 119 A H S S- 0 0 45 -7,-2.7 -7,-0.1 1,-0.4 2,-0.1 0.103 96.7 -65.9-104.9-145.8 4.7 5.8 -11.0 27 120 A T - 0 0 78 1,-0.1 -1,-0.4 -9,-0.0 2,-0.4 -0.001 63.9 -82.3 -76.6-158.4 4.4 9.2 -9.2 28 121 A I + 0 0 82 -8,-0.1 2,-0.3 -9,-0.1 -9,-0.2 -0.928 55.5 163.9-105.9 142.6 4.2 9.5 -5.4 29 122 A M E -C 18 0B 9 -11,-1.7 -11,-0.8 -2,-0.4 2,-0.4 -0.909 26.9-123.8-152.6 175.3 0.8 9.1 -3.7 30 123 A W E +C 17 0B 166 -2,-0.3 2,-0.2 -13,-0.2 -13,-0.2 -0.991 26.2 162.0-140.7 130.7 -0.7 8.4 -0.2 31 124 A L E -C 16 0B 21 -15,-2.1 -15,-2.5 -2,-0.4 10,-0.1 -0.764 24.9-135.6-132.3 174.1 -3.1 5.8 1.3 32 125 A K + 0 0 97 -17,-0.3 -17,-0.2 -2,-0.2 6,-0.1 -0.714 16.3 179.1-143.4 102.4 -4.1 4.5 4.8 33 126 A P - 0 0 0 0, 0.0 2,-0.3 0, 0.0 5,-0.1 -0.243 20.4-145.1 -70.9 176.9 -4.5 0.8 5.9 34 127 A T > - 0 0 19 16,-0.1 3,-2.6 -2,-0.0 16,-0.6 -0.930 31.3 -97.2-139.7 159.0 -5.4 0.2 9.6 35 128 A V T 3 S+ 0 0 30 -23,-3.1 -22,-0.1 1,-0.3 -23,-0.0 0.831 128.8 39.2 -49.2 -38.0 -4.3 -2.7 12.0 36 129 A N T 3 S+ 0 0 142 -24,-0.3 -1,-0.3 15,-0.1 2,-0.1 0.467 123.5 40.8 -80.9 -8.2 -7.6 -4.6 11.1 37 130 A E < - 0 0 101 -3,-2.6 13,-0.9 2,-0.0 2,-0.3 -0.468 62.5-127.9-140.8-173.5 -7.5 -3.6 7.5 38 131 A V E -B 49 0A 41 11,-0.2 2,-0.3 -2,-0.1 11,-0.2 -0.862 13.7-150.6-141.5 167.3 -5.9 -2.9 4.1 39 132 A A E -B 48 0A 19 9,-2.2 9,-2.7 -2,-0.3 2,-0.4 -0.974 10.6-140.7-148.2 142.6 -5.8 -0.0 1.5 40 133 A R E -B 47 0A 180 -2,-0.3 7,-0.3 7,-0.2 -8,-0.1 -0.829 11.6-133.8-100.0 143.5 -5.4 0.0 -2.4 41 134 A C - 0 0 6 5,-2.4 -1,-0.1 -2,-0.4 -10,-0.0 -0.122 0.8-153.3 -65.1 175.2 -3.5 2.4 -4.6 42 135 A W S S+ 0 0 186 -2,-0.0 -1,-0.1 3,-0.0 -2,-0.0 0.407 91.1 48.9-127.5 -13.3 -4.8 3.9 -7.8 43 136 A E S S+ 0 0 76 3,-0.1 -24,-0.0 -16,-0.0 -15,-0.0 0.916 135.8 9.4 -95.3 -60.8 -1.5 4.5 -9.7 44 137 A C S S- 0 0 50 2,-0.1 3,-0.1 -26,-0.0 -25,-0.0 0.600 94.6-139.4 -80.8 -23.4 0.2 1.0 -9.2 45 138 A G + 0 0 34 1,-0.2 2,-0.2 -5,-0.0 -3,-0.0 0.635 46.5 155.1 64.5 16.2 -3.1 -0.4 -7.8 46 139 A S - 0 0 30 -6,-0.1 -5,-2.4 1,-0.0 2,-0.3 -0.542 41.9-130.8 -68.8 137.2 -1.2 -2.4 -5.2 47 140 A V E - B 0 40A 27 -7,-0.3 2,-0.3 -2,-0.2 -7,-0.2 -0.691 26.5-164.5 -82.0 147.0 -3.0 -3.3 -2.0 48 141 A Y E - B 0 39A 13 -9,-2.7 -9,-2.2 -2,-0.3 2,-0.3 -0.940 2.5-150.0-132.0 150.0 -1.0 -2.4 1.2 49 142 A K E -aB 6 38A 49 -44,-2.3 -42,-2.2 -2,-0.3 2,-0.3 -0.918 7.5-137.3-127.0 150.0 -1.5 -3.5 4.9 50 143 A L E -a 7 0A 3 -13,-0.9 -42,-0.1 -16,-0.6 -16,-0.1 -0.683 21.9-136.7 -92.6 155.7 -0.8 -2.1 8.4 51 144 A N - 0 0 22 -44,-0.9 -41,-0.4 -2,-0.3 -42,-0.3 -0.892 17.4-124.1-111.6 152.2 0.6 -4.2 11.2 52 145 A P + 0 0 102 0, 0.0 -40,-0.1 0, 0.0 -44,-0.0 0.442 61.2 149.3 -67.8 -6.0 -0.4 -4.5 14.9 53 146 A V 0 0 43 -42,-0.1 -43,-0.6 1,-0.1 -2,-0.1 0.031 360.0 360.0 -36.8 133.4 3.2 -3.5 15.9 54 147 A G 0 0 96 -45,-0.1 -43,-0.1 -42,-0.0 -1,-0.1 -0.900 360.0 360.0-127.9 360.0 3.8 -1.6 19.1