==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 29-JUL-03 1OKS . COMPND 2 MOLECULE: RNA POLYMERASE ALPHA SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: MEASLES VIRUS; . AUTHOR K.JOHANSSON,J.-M.BOURHIS,V.CAMPANACCI,C.CAMBILLAU,B.CANARD, . 53 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4309.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 77.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 67.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 46 0, 0.0 39,-0.1 0, 0.0 38,-0.1 0.000 360.0 360.0 360.0 179.9 33.9 10.1 13.1 2 3 A S > - 0 0 61 1,-0.1 4,-2.3 35,-0.1 5,-0.2 -0.390 360.0-120.0 -73.3 155.4 33.1 6.5 13.9 3 4 A R H > S+ 0 0 99 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.858 114.3 54.3 -57.9 -37.8 31.1 4.4 11.5 4 5 A S H > S+ 0 0 65 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.930 108.3 47.6 -69.5 -39.3 28.4 3.9 14.1 5 6 A V H > S+ 0 0 64 2,-0.2 4,-2.3 1,-0.2 -2,-0.2 0.935 113.4 47.8 -66.7 -42.8 27.9 7.7 14.6 6 7 A I H X S+ 0 0 0 -4,-2.3 4,-2.3 1,-0.2 5,-0.2 0.925 110.6 51.9 -63.4 -45.5 27.8 8.3 10.9 7 8 A R H X S+ 0 0 152 -4,-2.6 4,-2.9 1,-0.2 -1,-0.2 0.915 110.2 48.6 -56.1 -46.8 25.3 5.5 10.3 8 9 A S H X S+ 0 0 66 -4,-2.3 4,-2.7 2,-0.2 -1,-0.2 0.901 108.9 53.2 -62.3 -40.9 23.0 7.0 13.1 9 10 A I H X S+ 0 0 43 -4,-2.3 4,-0.7 1,-0.2 -2,-0.2 0.915 113.5 43.2 -62.4 -41.2 23.2 10.5 11.6 10 11 A I H >< S+ 0 0 1 -4,-2.3 3,-0.7 2,-0.2 5,-0.3 0.947 115.6 47.6 -67.7 -49.2 22.1 9.1 8.2 11 12 A K H 3< S+ 0 0 164 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.892 114.1 46.5 -60.7 -39.7 19.4 6.9 9.6 12 13 A S H 3< S+ 0 0 98 -4,-2.7 -1,-0.2 -5,-0.2 -2,-0.2 0.608 95.2 101.3 -80.3 -10.4 18.0 9.6 11.9 13 14 A S S << S- 0 0 15 -3,-0.7 -3,-0.1 -4,-0.7 7,-0.0 -0.094 78.4-122.8 -73.3 170.0 18.0 12.3 9.1 14 15 A R + 0 0 193 33,-0.1 -1,-0.1 2,-0.0 3,-0.1 0.160 66.4 128.9-100.1 19.3 15.0 13.4 7.1 15 16 A L S S- 0 0 18 -5,-0.3 5,-0.1 1,-0.1 32,-0.0 -0.352 73.9 -84.3 -68.7 157.2 16.6 12.6 3.7 16 17 A E >> - 0 0 113 1,-0.1 4,-2.2 3,-0.1 3,-0.6 -0.263 41.7-118.3 -58.4 143.5 14.7 10.5 1.2 17 18 A E H 3> S+ 0 0 109 1,-0.3 4,-2.3 2,-0.2 5,-0.2 0.871 113.8 51.9 -57.6 -39.0 15.2 6.8 2.0 18 19 A D H 3> S+ 0 0 97 1,-0.2 4,-1.9 2,-0.2 -1,-0.3 0.829 109.9 50.5 -69.4 -28.2 16.8 6.0 -1.3 19 20 A R H <> S+ 0 0 164 -3,-0.6 4,-2.1 2,-0.2 -2,-0.2 0.849 107.8 52.9 -76.6 -33.1 19.3 8.9 -0.7 20 21 A K H X S+ 0 0 22 -4,-2.2 4,-2.1 2,-0.2 -2,-0.2 0.928 109.6 49.0 -60.8 -44.2 20.0 7.5 2.7 21 22 A R H X S+ 0 0 147 -4,-2.3 4,-1.9 1,-0.2 -2,-0.2 0.907 107.3 55.2 -67.8 -36.8 20.8 4.1 1.2 22 23 A Y H X S+ 0 0 139 -4,-1.9 4,-1.9 1,-0.2 3,-0.3 0.949 108.3 48.4 -55.0 -51.4 23.0 5.8 -1.4 23 24 A L H X S+ 0 0 11 -4,-2.1 4,-2.5 1,-0.2 -1,-0.2 0.872 107.9 55.5 -61.9 -35.5 25.1 7.4 1.4 24 25 A X H X S+ 0 0 45 -4,-2.1 4,-2.3 2,-0.2 -1,-0.2 0.888 104.5 53.2 -65.6 -32.4 25.3 4.1 3.2 25 26 A T H X S+ 0 0 73 -4,-1.9 4,-0.9 -3,-0.3 -2,-0.2 0.902 110.3 47.9 -70.1 -36.0 26.8 2.5 0.1 26 27 A L H >X S+ 0 0 53 -4,-1.9 3,-1.0 1,-0.2 4,-0.7 0.935 110.2 51.5 -63.9 -46.7 29.4 5.2 0.0 27 28 A L H >< S+ 0 0 4 -4,-2.5 3,-1.1 1,-0.3 -2,-0.2 0.894 104.4 58.0 -57.8 -40.1 30.2 4.8 3.7 28 29 A D H 3< S+ 0 0 118 -4,-2.3 -1,-0.3 1,-0.3 -2,-0.2 0.760 107.3 47.8 -62.8 -25.8 30.6 1.0 3.2 29 30 A D H << S+ 0 0 121 -3,-1.0 -1,-0.3 -4,-0.9 2,-0.2 0.532 89.4 103.4 -90.0 -12.6 33.4 1.8 0.6 30 31 A I << - 0 0 36 -3,-1.1 2,-0.4 -4,-0.7 6,-0.0 -0.539 51.9-169.8 -72.1 138.4 35.2 4.3 2.9 31 32 A K + 0 0 152 -2,-0.2 4,-0.3 1,-0.0 -2,-0.0 -0.998 41.0 24.1-133.5 128.6 38.4 2.9 4.6 32 33 A G S > S- 0 0 44 -2,-0.4 4,-2.1 3,-0.1 5,-0.2 0.073 78.1 -91.6 103.0 152.0 40.4 4.6 7.3 33 34 A A H > S+ 0 0 71 2,-0.2 4,-2.1 1,-0.2 5,-0.1 0.894 121.1 50.6 -66.2 -44.7 39.9 7.1 10.1 34 35 A N H > S+ 0 0 129 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.915 113.3 45.4 -58.3 -46.4 41.0 10.1 8.1 35 36 A D H > S+ 0 0 75 -4,-0.3 4,-1.9 2,-0.2 -2,-0.2 0.840 111.4 53.2 -68.8 -33.9 38.6 9.3 5.3 36 37 A L H X S+ 0 0 19 -4,-2.1 4,-2.3 2,-0.2 -1,-0.2 0.882 108.7 50.5 -65.0 -38.8 35.8 8.5 7.8 37 38 A A H X S+ 0 0 49 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.887 110.2 48.7 -66.5 -40.3 36.3 12.0 9.3 38 39 A K H X S+ 0 0 139 -4,-1.8 4,-2.4 2,-0.2 -1,-0.2 0.863 111.1 51.3 -67.6 -36.4 36.1 13.7 5.9 39 40 A F H X S+ 0 0 13 -4,-1.9 4,-2.7 2,-0.2 -2,-0.2 0.923 109.9 48.6 -65.2 -46.8 33.0 11.8 5.1 40 41 A H H X S+ 0 0 52 -4,-2.3 4,-2.5 2,-0.2 5,-0.2 0.914 110.0 53.0 -60.3 -42.1 31.4 12.8 8.4 41 42 A Q H X S+ 0 0 121 -4,-2.2 4,-1.6 1,-0.2 -2,-0.2 0.941 112.4 43.8 -60.3 -46.4 32.4 16.4 7.6 42 43 A X H X S+ 0 0 79 -4,-2.4 4,-2.3 1,-0.2 -1,-0.2 0.876 112.3 54.8 -59.2 -46.2 30.7 16.3 4.2 43 44 A L H X S+ 0 0 0 -4,-2.7 4,-2.9 2,-0.2 5,-0.2 0.921 105.5 49.9 -58.1 -45.4 27.7 14.6 5.7 44 45 A V H X S+ 0 0 58 -4,-2.5 4,-2.7 1,-0.2 5,-0.3 0.930 110.7 50.9 -63.7 -39.9 27.0 17.2 8.3 45 46 A K H X S+ 0 0 127 -4,-1.6 4,-1.8 -5,-0.2 -1,-0.2 0.923 112.1 47.2 -60.6 -46.5 27.2 19.9 5.6 46 47 A I H X S+ 0 0 64 -4,-2.3 4,-2.2 1,-0.2 -2,-0.2 0.912 113.8 46.8 -59.9 -48.0 24.7 18.0 3.5 47 48 A I H X S+ 0 0 33 -4,-2.9 4,-2.6 1,-0.2 -2,-0.2 0.922 114.1 46.4 -62.5 -45.0 22.3 17.4 6.3 48 49 A X H X S+ 0 0 85 -4,-2.7 4,-1.5 -5,-0.2 -1,-0.2 0.850 112.4 50.4 -72.6 -29.2 22.4 21.0 7.6 49 50 A K H < S+ 0 0 154 -4,-1.8 4,-0.5 -5,-0.3 -1,-0.2 0.932 113.3 46.3 -71.1 -43.3 22.0 22.5 4.1 50 51 A H H >< S+ 0 0 77 -4,-2.2 3,-0.9 1,-0.2 -2,-0.2 0.886 112.6 50.6 -65.0 -41.8 19.0 20.2 3.5 51 52 A H H 3< S+ 0 0 106 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.810 100.0 65.4 -63.0 -35.1 17.6 21.1 6.9 52 53 A H T 3< 0 0 133 -4,-1.5 -1,-0.2 -5,-0.2 -2,-0.2 0.581 360.0 360.0 -78.8 -7.5 17.9 24.8 6.2 53 54 A H < 0 0 192 -3,-0.9 -3,-0.0 -4,-0.5 0, 0.0 -0.285 360.0 360.0 -55.1 360.0 15.3 24.8 3.4