==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 18-JAN-07 2OKZ . COMPND 2 MOLECULE: PEPTIDE FROM ALZHEIMER'S A-BETA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.R.SAWAYA,S.SAMBASHIVAN,D.EISENBERG . 12 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1524.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 231 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 136.9 6.0 -0.3 -5.7 2 2 A V - 0 0 146 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.991 360.0-179.4-146.0 133.3 4.2 -0.8 -2.4 3 3 A G - 0 0 74 -2,-0.4 2,-0.3 2,-0.0 0, 0.0 -0.983 1.6-175.3-133.0 147.6 0.7 -0.3 -1.4 4 4 A G - 0 0 56 -2,-0.3 2,-0.4 8,-0.0 -2,-0.0 -0.998 3.9-172.2-140.7 139.5 -1.2 -0.7 1.9 5 5 A V 0 0 137 -2,-0.3 -2,-0.0 6,-0.0 6,-0.0 -0.997 360.0 360.0-131.2 131.1 -4.9 -0.4 3.0 6 6 A V 0 0 154 -2,-0.4 -2,-0.0 6,-0.0 6,-0.0 -0.986 360.0 360.0-128.2 360.0 -6.3 -0.6 6.6 7 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 8 1 B M 0 0 176 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 156.8 -6.4 -3.3 16.4 9 2 B V + 0 0 156 2,-0.1 2,-0.4 0, 0.0 0, 0.0 -0.993 360.0 30.3-128.5 119.4 -2.7 -2.9 16.6 10 3 B G + 0 0 56 -2,-0.4 2,-0.4 2,-0.1 0, 0.0 -0.987 45.9 167.5 138.6-147.0 -0.9 -3.5 13.2 11 4 B G S S- 0 0 44 -2,-0.4 2,-0.6 2,-0.1 -2,-0.1 -0.995 70.6 -13.6 134.2-126.7 -1.8 -3.1 9.6 12 5 B V 0 0 97 -2,-0.4 -2,-0.1 -8,-0.0 -8,-0.0 -0.972 360.0 360.0-113.9 116.1 0.7 -3.2 6.8 13 6 B V 0 0 197 -2,-0.6 -2,-0.1 0, 0.0 0, 0.0 -0.991 360.0 360.0-135.4 360.0 4.2 -3.0 8.3