==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-SEP-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 27-AUG-10 3OMY . COMPND 2 MOLECULE: PROTEIN TRAM; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR J.J.W.WONG,J.LU,R.A.EDWARDS,L.S.FROST,J.N.MARK GLOVER . 100 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9363.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 69.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 59 59.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A P 0 0 183 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 170.5 -18.1 -14.9 23.9 2 3 A K - 0 0 170 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.538 360.0-162.4 -77.2 142.0 -18.3 -16.0 27.5 3 4 A I - 0 0 124 -2,-0.2 2,-0.5 2,-0.0 34,-0.0 -0.999 2.4-167.6-121.7 129.7 -15.2 -16.4 29.7 4 5 A Q + 0 0 138 -2,-0.4 2,-0.2 2,-0.0 -2,-0.0 -0.974 21.4 154.7-116.4 121.5 -15.4 -18.4 32.9 5 6 A T - 0 0 106 -2,-0.5 2,-0.4 2,-0.0 -2,-0.0 -0.747 32.3-127.2-138.0 179.0 -12.5 -18.1 35.2 6 7 A Y + 0 0 181 -2,-0.2 2,-0.3 6,-0.0 -2,-0.0 -0.999 21.3 178.6-138.8 135.1 -11.7 -18.4 39.0 7 8 A V - 0 0 71 -2,-0.4 -2,-0.0 1,-0.1 2,-0.0 -0.883 35.4 -92.7-130.3 161.4 -10.0 -16.0 41.4 8 9 A N > - 0 0 99 -2,-0.3 4,-2.4 1,-0.1 5,-0.2 -0.236 43.4-104.1 -67.6 166.8 -9.2 -16.1 45.1 9 10 A N H > S+ 0 0 147 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.804 118.9 52.5 -64.7 -31.5 -11.6 -14.7 47.7 10 11 A N H > S+ 0 0 96 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.952 110.8 45.9 -72.7 -48.0 -9.7 -11.5 48.3 11 12 A V H > S+ 0 0 54 2,-0.2 4,-2.1 1,-0.2 -2,-0.2 0.918 111.8 53.2 -57.9 -44.2 -9.5 -10.7 44.5 12 13 A Y H X S+ 0 0 119 -4,-2.4 4,-2.4 1,-0.2 -1,-0.2 0.935 109.7 48.4 -56.4 -47.2 -13.2 -11.5 44.2 13 14 A E H X S+ 0 0 108 -4,-2.0 4,-2.6 1,-0.2 -1,-0.2 0.881 107.7 54.4 -62.1 -40.4 -14.0 -9.1 47.0 14 15 A Q H X S+ 0 0 102 -4,-2.3 4,-1.5 2,-0.2 -1,-0.2 0.874 108.9 49.2 -64.9 -34.9 -11.8 -6.3 45.5 15 16 A I H X S+ 0 0 27 -4,-2.1 4,-1.8 2,-0.2 -2,-0.2 0.928 110.9 48.6 -68.4 -43.9 -13.8 -6.6 42.3 16 17 A T H X S+ 0 0 48 -4,-2.4 4,-1.7 1,-0.2 -2,-0.2 0.896 108.1 55.7 -63.9 -32.9 -17.1 -6.4 44.1 17 18 A D H X S+ 0 0 83 -4,-2.6 4,-2.2 1,-0.2 -1,-0.2 0.868 105.0 53.1 -62.2 -37.6 -15.7 -3.4 46.0 18 19 A L H X S+ 0 0 46 -4,-1.5 4,-3.1 2,-0.2 -1,-0.2 0.843 102.0 58.3 -69.9 -32.3 -15.1 -1.8 42.6 19 20 A V H X S+ 0 0 12 -4,-1.8 4,-2.3 2,-0.2 -1,-0.2 0.951 108.3 46.6 -57.3 -48.5 -18.7 -2.5 41.5 20 21 A T H X S+ 0 0 93 -4,-1.7 4,-2.2 1,-0.2 -2,-0.2 0.925 113.9 47.5 -58.4 -45.3 -19.8 -0.4 44.6 21 22 A I H X S+ 0 0 73 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.922 109.7 52.8 -62.0 -44.8 -17.3 2.3 43.7 22 23 A R H <>S+ 0 0 57 -4,-3.1 5,-2.7 1,-0.2 -1,-0.2 0.888 109.7 48.7 -60.4 -41.8 -18.3 2.4 40.0 23 24 A K H ><5S+ 0 0 111 -4,-2.3 3,-1.8 3,-0.2 -1,-0.2 0.911 109.3 52.5 -62.2 -43.3 -22.0 2.9 41.1 24 25 A Q H 3<5S+ 0 0 165 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.847 105.7 56.3 -60.8 -33.0 -20.9 5.7 43.4 25 26 A E T 3<5S- 0 0 135 -4,-2.0 -1,-0.3 -5,-0.1 -2,-0.2 0.219 132.0 -92.9 -84.7 12.5 -19.1 7.2 40.4 26 27 A G T < 5S+ 0 0 59 -3,-1.8 2,-1.6 1,-0.2 -3,-0.2 0.409 87.7 129.0 97.0 1.7 -22.4 7.3 38.5 27 28 A I > < + 0 0 54 -5,-2.7 3,-2.0 1,-0.2 -1,-0.2 -0.619 29.4 173.7 -90.1 81.8 -22.1 3.9 36.6 28 29 A E T 3 S+ 0 0 170 -2,-1.6 -1,-0.2 1,-0.3 -5,-0.1 0.798 73.0 52.9 -63.8 -32.2 -25.6 2.8 37.7 29 30 A E T 3 S+ 0 0 132 -3,-0.2 -1,-0.3 -7,-0.1 5,-0.2 0.298 77.4 136.5 -85.6 4.7 -25.5 -0.4 35.6 30 31 A A < + 0 0 5 -3,-2.0 2,-0.3 -11,-0.1 3,-0.1 -0.295 26.9 169.8 -57.8 141.2 -22.1 -1.6 37.0 31 32 A S > - 0 0 43 1,-0.1 4,-2.8 -9,-0.0 5,-0.4 -0.952 50.5-103.6-145.3 163.2 -22.1 -5.3 37.7 32 33 A L H > S+ 0 0 57 -2,-0.3 4,-2.3 1,-0.2 5,-0.2 0.919 122.2 50.6 -54.8 -43.8 -19.5 -8.0 38.7 33 34 A S H > S+ 0 0 94 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.939 114.3 39.7 -62.3 -50.3 -19.7 -9.2 35.1 34 35 A N H > S+ 0 0 60 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.793 116.0 50.1 -79.5 -23.3 -19.2 -5.9 33.3 35 36 A V H X S+ 0 0 0 -4,-2.8 4,-2.6 2,-0.2 -1,-0.2 0.908 112.0 50.0 -69.3 -44.3 -16.6 -4.6 35.7 36 37 A S H X S+ 0 0 42 -4,-2.3 4,-2.6 -5,-0.4 -2,-0.2 0.904 109.1 51.1 -59.9 -43.0 -14.7 -7.9 35.3 37 38 A S H X S+ 0 0 74 -4,-2.2 4,-1.9 2,-0.2 -1,-0.2 0.879 111.3 47.9 -62.3 -39.4 -14.9 -7.6 31.5 38 39 A M H X S+ 0 0 63 -4,-1.4 4,-2.3 2,-0.2 -2,-0.2 0.905 113.6 47.0 -68.3 -42.1 -13.5 -4.1 31.6 39 40 A L H X S+ 0 0 56 -4,-2.6 4,-2.9 2,-0.2 -2,-0.2 0.880 109.2 54.4 -66.3 -38.4 -10.7 -5.2 34.0 40 41 A L H X S+ 0 0 98 -4,-2.6 4,-2.5 2,-0.2 -2,-0.2 0.927 110.4 46.1 -62.1 -43.8 -9.9 -8.2 31.8 41 42 A E H X S+ 0 0 100 -4,-1.9 4,-2.3 2,-0.2 -2,-0.2 0.914 112.8 50.1 -66.4 -40.6 -9.5 -5.9 28.7 42 43 A L H X S+ 0 0 96 -4,-2.3 4,-2.5 2,-0.2 5,-0.2 0.936 111.3 48.8 -61.6 -46.0 -7.3 -3.5 30.7 43 44 A G H X S+ 0 0 41 -4,-2.9 4,-3.0 1,-0.2 5,-0.2 0.915 109.1 53.0 -60.5 -44.3 -5.1 -6.3 32.0 44 45 A L H X S+ 0 0 86 -4,-2.5 4,-2.3 1,-0.2 -1,-0.2 0.931 110.0 48.6 -53.1 -47.6 -4.8 -7.7 28.4 45 46 A R H X S+ 0 0 132 -4,-2.3 4,-1.8 1,-0.2 -2,-0.2 0.920 114.4 44.3 -63.2 -45.3 -3.6 -4.2 27.2 46 47 A V H X S+ 0 0 44 -4,-2.5 4,-2.0 2,-0.2 -1,-0.2 0.929 112.2 51.8 -66.5 -42.2 -1.1 -3.8 30.0 47 48 A Y H X S+ 0 0 162 -4,-3.0 4,-0.9 1,-0.2 -2,-0.2 0.911 109.7 49.5 -62.9 -40.0 0.3 -7.3 29.6 48 49 A M H < S+ 0 0 92 -4,-2.3 3,-0.4 -5,-0.2 -1,-0.2 0.871 108.9 53.0 -70.2 -32.0 0.8 -6.9 25.9 49 50 A I H < S+ 0 0 138 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.884 110.5 48.8 -61.4 -38.8 2.6 -3.5 26.6 50 51 A Q H < 0 0 104 -4,-2.0 -1,-0.2 -5,-0.1 -2,-0.2 0.582 360.0 360.0 -84.1 -8.5 4.9 -5.4 29.0 51 52 A Q < 0 0 186 -4,-0.9 -3,-0.0 -3,-0.4 -4,-0.0 -0.288 360.0 360.0 -63.5 360.0 5.7 -8.3 26.6 52 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 53 2 B P 0 0 183 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 166.8 14.4 15.7 43.6 54 3 B K - 0 0 155 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.526 360.0-163.5 -79.8 140.0 15.3 16.1 40.0 55 4 B I - 0 0 123 -2,-0.2 2,-0.5 2,-0.0 34,-0.0 -0.998 7.6-173.7-121.6 123.8 15.1 13.3 37.5 56 5 B Q + 0 0 152 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.981 16.0 154.3-115.9 126.8 16.9 13.8 34.2 57 6 B T - 0 0 111 -2,-0.5 2,-0.4 2,-0.0 -2,-0.0 -0.864 32.6-128.3-141.4 178.1 16.5 11.2 31.5 58 7 B Y + 0 0 223 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.995 22.8 176.6-135.3 136.3 16.7 10.8 27.7 59 8 B V - 0 0 73 -2,-0.4 -2,-0.0 1,-0.1 2,-0.0 -0.852 34.0 -95.5-131.2 165.6 14.2 9.3 25.3 60 9 B N > - 0 0 96 -2,-0.3 4,-2.4 1,-0.1 5,-0.1 -0.222 42.4-101.3 -75.9 174.9 13.9 8.9 21.5 61 10 B N H > S+ 0 0 143 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.776 119.2 58.8 -71.3 -28.0 11.9 11.4 19.4 62 11 B N H > S+ 0 0 99 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.959 111.4 39.7 -64.7 -52.3 9.0 9.1 19.1 63 12 B V H > S+ 0 0 55 2,-0.2 4,-2.1 1,-0.2 -2,-0.2 0.924 115.8 53.1 -59.7 -45.6 8.4 8.9 22.9 64 13 B Y H X S+ 0 0 114 -4,-2.4 4,-2.6 1,-0.2 5,-0.2 0.926 109.1 47.8 -58.5 -47.5 9.2 12.6 23.2 65 14 B E H X S+ 0 0 118 -4,-2.5 4,-2.5 1,-0.2 -1,-0.2 0.857 109.4 53.9 -64.1 -35.5 6.7 13.6 20.5 66 15 B Q H X S+ 0 0 108 -4,-1.9 4,-1.6 2,-0.2 -1,-0.2 0.890 110.5 47.0 -66.4 -34.7 4.0 11.5 22.2 67 16 B I H X S+ 0 0 29 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.935 113.1 46.7 -72.6 -44.3 4.6 13.2 25.5 68 17 B T H X S+ 0 0 47 -4,-2.6 4,-2.0 1,-0.2 -2,-0.2 0.888 111.0 53.9 -65.1 -34.5 4.5 16.7 24.0 69 18 B D H X S+ 0 0 81 -4,-2.5 4,-2.3 -5,-0.2 -1,-0.2 0.895 107.5 51.7 -62.1 -38.3 1.4 15.7 22.2 70 19 B L H X S+ 0 0 45 -4,-1.6 4,-3.0 2,-0.2 -2,-0.2 0.879 104.0 55.8 -67.4 -36.8 -0.1 14.6 25.5 71 20 B V H X S+ 0 0 10 -4,-2.2 4,-2.2 2,-0.2 -1,-0.2 0.951 110.2 46.4 -56.2 -48.0 0.8 18.0 27.0 72 21 B T H X S+ 0 0 79 -4,-2.0 4,-2.2 1,-0.2 -2,-0.2 0.914 112.0 50.8 -59.9 -44.5 -1.3 19.6 24.2 73 22 B I H X S+ 0 0 72 -4,-2.3 4,-1.9 2,-0.2 -2,-0.2 0.919 108.6 51.3 -59.6 -46.6 -4.1 17.1 24.8 74 23 B R H <>S+ 0 0 85 -4,-3.0 5,-2.7 1,-0.2 -1,-0.2 0.914 109.5 50.2 -62.1 -39.8 -4.2 17.8 28.5 75 24 B K H ><5S+ 0 0 111 -4,-2.2 3,-1.7 1,-0.2 -1,-0.2 0.914 109.6 51.2 -61.6 -42.0 -4.5 21.6 27.8 76 25 B Q H 3<5S+ 0 0 151 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.816 105.4 56.7 -62.4 -31.1 -7.3 20.8 25.4 77 26 B E T 3<5S- 0 0 121 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.373 131.3 -96.2 -82.7 4.5 -9.0 18.8 28.2 78 27 B G T < 5S+ 0 0 51 -3,-1.7 2,-1.4 1,-0.2 -3,-0.2 0.524 82.1 134.8 96.9 9.6 -8.8 22.0 30.3 79 28 B I > < + 0 0 46 -5,-2.7 3,-1.8 1,-0.2 -1,-0.2 -0.660 25.0 174.8 -90.7 83.1 -5.6 21.4 32.3 80 29 B E T 3 S+ 0 0 177 -2,-1.4 -1,-0.2 1,-0.3 -5,-0.1 0.773 74.4 56.4 -62.1 -29.7 -4.1 24.9 31.9 81 30 B E T 3 S+ 0 0 137 -3,-0.2 -1,-0.3 -7,-0.1 5,-0.2 0.440 76.8 128.8 -84.9 1.3 -1.2 24.1 34.2 82 31 B A < + 0 0 6 -3,-1.8 2,-0.3 -11,-0.1 3,-0.1 -0.293 30.7 165.9 -60.3 137.1 -0.0 21.1 32.1 83 32 B S > - 0 0 41 1,-0.1 4,-2.8 -8,-0.0 5,-0.4 -0.960 52.0-103.5-143.7 164.0 3.7 21.2 31.2 84 33 B L H > S+ 0 0 63 -2,-0.3 4,-2.2 1,-0.2 5,-0.2 0.924 121.6 50.0 -53.0 -43.6 6.3 18.8 29.8 85 34 B S H > S+ 0 0 92 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.944 114.3 40.1 -65.2 -47.6 7.7 18.5 33.3 86 35 B N H > S+ 0 0 64 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.839 115.6 50.3 -78.7 -26.5 4.5 17.8 35.2 87 36 B V H X S+ 0 0 6 -4,-2.8 4,-2.5 2,-0.2 -1,-0.2 0.921 111.8 50.3 -69.9 -41.0 3.1 15.5 32.5 88 37 B S H X S+ 0 0 41 -4,-2.2 4,-2.7 -5,-0.4 -2,-0.2 0.895 109.2 50.1 -63.2 -39.6 6.4 13.6 32.6 89 38 B S H X S+ 0 0 47 -4,-2.1 4,-2.4 2,-0.2 5,-0.2 0.923 110.2 50.4 -67.9 -39.0 6.3 13.3 36.4 90 39 B M H X S+ 0 0 84 -4,-1.9 4,-2.2 1,-0.2 -2,-0.2 0.934 114.4 44.5 -58.5 -45.6 2.7 11.9 36.2 91 40 B L H X S+ 0 0 54 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.883 111.6 52.5 -68.3 -40.5 3.8 9.3 33.6 92 41 B L H X S+ 0 0 90 -4,-2.7 4,-2.5 2,-0.2 -1,-0.2 0.923 111.6 46.1 -61.5 -44.7 6.9 8.4 35.5 93 42 B E H X S+ 0 0 119 -4,-2.4 4,-2.5 2,-0.2 -2,-0.2 0.902 112.0 51.0 -66.9 -40.3 5.0 7.7 38.7 94 43 B L H X S+ 0 0 96 -4,-2.2 4,-2.5 -5,-0.2 -2,-0.2 0.935 111.4 48.1 -59.6 -47.4 2.3 5.8 36.8 95 44 B G H X S+ 0 0 41 -4,-2.7 4,-2.9 1,-0.2 5,-0.2 0.910 110.1 52.5 -61.7 -42.6 5.0 3.6 35.2 96 45 B L H X S+ 0 0 100 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.955 110.8 47.3 -54.7 -49.8 6.7 3.1 38.6 97 46 B R H < S+ 0 0 169 -4,-2.5 4,-0.3 1,-0.2 -2,-0.2 0.910 114.7 45.5 -61.0 -45.0 3.4 1.9 40.1 98 47 B V H >< S+ 0 0 44 -4,-2.5 3,-1.5 1,-0.2 -1,-0.2 0.935 112.1 51.4 -66.4 -43.6 2.7 -0.4 37.2 99 48 B Y H 3< S+ 0 0 182 -4,-2.9 -2,-0.2 1,-0.3 -1,-0.2 0.862 106.2 55.3 -61.9 -36.3 6.2 -1.9 37.1 100 49 B M T 3< 0 0 120 -4,-2.2 -1,-0.3 -5,-0.2 -2,-0.2 0.462 360.0 360.0 -81.3 0.6 6.1 -2.6 40.9 101 50 B I < 0 0 173 -3,-1.5 -3,-0.0 -4,-0.3 -4,-0.0 -0.405 360.0 360.0 -60.7 360.0 3.0 -4.7 40.6