==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 02-MAR-03 1ONV . COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIF, ALPHA . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR B.D.NGUYEN,K.L.ABBOTT,K.POTEMPA,M.S.KOBOR,J.ARCHAMBAULT, . 88 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6584.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 63.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 43.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 451 A D 0 0 178 0, 0.0 2,-0.4 0, 0.0 31,-0.0 0.000 360.0 360.0 360.0 81.5 -17.1 10.9 -1.2 2 452 A V - 0 0 67 29,-0.0 2,-0.3 2,-0.0 29,-0.0 -0.942 360.0-175.4-116.7 132.6 -14.2 8.5 -1.2 3 453 A Q - 0 0 160 -2,-0.4 2,-0.5 29,-0.0 29,-0.0 -0.918 17.4-135.9-125.8 151.8 -13.8 5.5 1.1 4 454 A V + 0 0 50 -2,-0.3 2,-0.3 4,-0.0 3,-0.0 -0.914 27.8 167.9-111.0 130.8 -10.9 3.0 1.7 5 455 A T > - 0 0 76 -2,-0.5 4,-1.7 1,-0.1 3,-0.3 -0.955 45.2-118.8-138.7 156.9 -11.5 -0.7 2.0 6 456 A E H > S+ 0 0 73 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.879 114.7 57.3 -60.7 -39.2 -9.4 -3.9 2.0 7 457 A D H > S+ 0 0 106 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.873 105.0 51.8 -59.9 -38.6 -11.3 -5.1 -1.1 8 458 A A H > S+ 0 0 28 -3,-0.3 4,-1.2 2,-0.2 -1,-0.2 0.922 111.9 44.9 -64.9 -45.6 -10.3 -2.0 -3.0 9 459 A V H X S+ 0 0 9 -4,-1.7 4,-1.5 1,-0.2 3,-0.4 0.927 113.9 48.7 -64.6 -46.4 -6.6 -2.5 -2.1 10 460 A R H X S+ 0 0 99 -4,-2.8 4,-2.8 1,-0.2 -1,-0.2 0.829 102.7 64.7 -63.1 -32.5 -6.6 -6.2 -2.9 11 461 A R H X S+ 0 0 91 -4,-1.8 4,-1.6 -5,-0.2 -1,-0.2 0.898 102.8 47.0 -57.7 -42.7 -8.4 -5.4 -6.2 12 462 A Y H X S+ 0 0 76 -4,-1.2 4,-3.5 -3,-0.4 -1,-0.2 0.919 113.8 46.9 -66.1 -45.0 -5.3 -3.5 -7.4 13 463 A L H < S+ 0 0 3 -4,-1.5 52,-1.0 1,-0.2 -2,-0.2 0.861 110.8 53.0 -65.3 -36.4 -2.9 -6.2 -6.4 14 464 A T H < S+ 0 0 44 -4,-2.8 -1,-0.2 50,-0.2 -2,-0.2 0.840 118.1 36.7 -68.0 -33.8 -5.1 -8.9 -8.0 15 465 A R H < S- 0 0 186 -4,-1.6 -2,-0.2 1,-0.3 -3,-0.2 0.929 136.3 -3.3 -83.1 -52.2 -5.1 -7.0 -11.3 16 466 A K S < S- 0 0 146 -4,-3.5 -1,-0.3 -5,-0.2 2,-0.1 -0.997 77.9-104.6-146.1 138.8 -1.6 -5.7 -11.3 17 467 A P + 0 0 44 0, 0.0 2,-0.3 0, 0.0 47,-0.2 -0.366 44.8 176.6 -63.7 135.4 1.3 -5.9 -8.7 18 468 A M B -A 63 0A 22 45,-1.6 45,-3.4 -2,-0.1 2,-0.2 -0.887 23.6-119.2-136.7 167.3 2.0 -2.6 -6.8 19 469 A T > - 0 0 29 -2,-0.3 4,-2.4 43,-0.2 5,-0.2 -0.638 29.6-109.8-105.6 164.8 4.2 -1.3 -4.1 20 470 A T H > S+ 0 0 4 1,-0.2 4,-2.4 -2,-0.2 5,-0.2 0.901 120.0 51.7 -58.2 -43.0 3.4 0.2 -0.7 21 471 A K H > S+ 0 0 79 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.891 110.8 47.9 -61.6 -40.8 4.5 3.6 -1.8 22 472 A D H > S+ 0 0 50 2,-0.2 4,-1.1 1,-0.2 -2,-0.2 0.888 110.8 51.1 -67.6 -40.3 2.3 3.4 -4.9 23 473 A L H X S+ 0 0 10 -4,-2.4 4,-0.6 1,-0.2 3,-0.5 0.916 111.9 46.2 -63.6 -44.6 -0.7 2.2 -2.8 24 474 A L H >< S+ 0 0 7 -4,-2.4 3,-1.0 1,-0.2 -1,-0.2 0.863 105.1 61.4 -66.3 -36.7 -0.4 5.1 -0.4 25 475 A K H >< S+ 0 0 132 -4,-1.9 3,-0.6 1,-0.3 4,-0.4 0.807 91.6 68.7 -59.8 -30.3 0.0 7.5 -3.2 26 476 A K H 3< S+ 0 0 87 -4,-1.1 -1,-0.3 -3,-0.5 -2,-0.2 0.871 124.5 9.7 -57.2 -39.0 -3.5 6.5 -4.4 27 477 A F T << S+ 0 0 45 -3,-1.0 -1,-0.2 -4,-0.6 -2,-0.2 -0.040 94.0 117.2-132.1 30.4 -5.0 8.2 -1.3 28 478 A Q S < S- 0 0 51 -3,-0.6 -3,-0.1 -4,-0.2 11,-0.1 0.942 106.2 -37.7 -63.9 -49.1 -1.9 10.0 0.1 29 479 A T S S+ 0 0 95 -4,-0.4 -1,-0.1 4,-0.1 -2,-0.1 0.084 101.3 118.9-169.7 34.0 -3.5 13.5 -0.4 30 480 A K S S- 0 0 163 -5,-0.1 -3,-0.1 -4,-0.1 -4,-0.1 0.991 100.1 -38.0 -71.2 -65.0 -5.4 13.5 -3.6 31 481 A K S S+ 0 0 143 1,-0.1 2,-0.2 3,-0.0 -4,-0.1 0.583 110.4 97.7-130.8 -44.4 -8.9 14.2 -2.4 32 482 A T - 0 0 18 1,-0.1 2,-1.5 -31,-0.0 7,-0.1 -0.337 65.1-145.1 -56.2 118.7 -9.4 12.4 0.9 33 483 A G + 0 0 81 -2,-0.2 2,-0.3 -3,-0.1 -1,-0.1 -0.318 50.7 136.8 -84.6 54.9 -8.8 14.9 3.7 34 484 A L - 0 0 83 -2,-1.5 5,-0.0 -7,-0.2 -2,-0.0 -0.799 59.4-102.0-104.4 145.1 -7.2 12.4 6.0 35 485 A S > - 0 0 61 -2,-0.3 4,-3.0 1,-0.1 5,-0.2 -0.185 30.0-115.6 -59.8 153.6 -4.1 12.9 8.1 36 486 A S H > S+ 0 0 62 1,-0.2 4,-1.5 2,-0.2 5,-0.1 0.894 118.8 43.9 -57.9 -41.8 -0.8 11.4 6.8 37 487 A E H > S+ 0 0 154 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.885 113.7 50.4 -71.1 -39.9 -0.7 9.1 9.9 38 488 A Q H > S+ 0 0 107 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.903 108.3 52.5 -65.0 -42.4 -4.4 8.3 9.7 39 489 A T H X S+ 0 0 10 -4,-3.0 4,-1.7 1,-0.2 -1,-0.2 0.906 115.6 40.5 -60.3 -43.3 -4.1 7.3 6.0 40 490 A V H X S+ 0 0 11 -4,-1.5 4,-2.9 -5,-0.2 -2,-0.2 0.880 112.2 55.7 -73.0 -39.7 -1.2 5.0 6.7 41 491 A N H X S+ 0 0 83 -4,-2.7 4,-2.3 2,-0.2 -2,-0.2 0.907 109.6 46.7 -59.5 -44.0 -2.8 3.6 9.9 42 492 A V H X S+ 0 0 61 -4,-2.5 4,-1.5 2,-0.2 -2,-0.2 0.960 119.2 38.3 -63.6 -53.4 -5.9 2.6 8.1 43 493 A L H X S+ 0 0 11 -4,-1.7 4,-3.7 -5,-0.2 5,-0.3 0.814 114.4 58.0 -67.8 -30.8 -4.1 0.9 5.2 44 494 A A H X S+ 0 0 6 -4,-2.9 4,-3.3 2,-0.2 5,-0.3 0.934 104.9 48.3 -65.0 -47.8 -1.5 -0.4 7.6 45 495 A Q H X S+ 0 0 115 -4,-2.3 4,-0.8 -5,-0.2 -1,-0.2 0.870 120.6 38.5 -60.7 -38.1 -4.1 -2.3 9.7 46 496 A I H X S+ 0 0 39 -4,-1.5 4,-0.6 -5,-0.2 -2,-0.2 0.933 122.7 40.3 -78.1 -50.1 -5.6 -3.8 6.6 47 497 A L H >X S+ 0 0 3 -4,-3.7 3,-1.7 1,-0.2 4,-0.8 0.940 108.7 60.2 -64.9 -49.2 -2.4 -4.4 4.6 48 498 A K H 3< S+ 0 0 54 -4,-3.3 3,-0.5 -5,-0.3 -1,-0.2 0.860 110.3 43.1 -47.7 -40.4 -0.4 -5.6 7.6 49 499 A R H 3< S+ 0 0 198 -4,-0.8 -1,-0.3 -5,-0.3 -2,-0.2 0.647 95.2 82.9 -80.3 -15.8 -3.0 -8.4 8.0 50 500 A L H << - 0 0 9 -3,-1.7 -1,-0.2 -4,-0.6 -2,-0.2 0.842 69.4-168.8 -56.4 -37.3 -2.9 -9.0 4.2 51 501 A N < + 0 0 101 -4,-0.8 -3,-0.1 -3,-0.5 -1,-0.1 0.892 24.5 169.5 44.6 49.2 0.2 -11.1 4.5 52 502 A P - 0 0 15 0, 0.0 2,-0.3 0, 0.0 13,-0.1 0.070 33.2 -90.9 -75.8-168.4 0.6 -11.0 0.7 53 503 A E E -B 64 0A 100 11,-1.5 11,-1.7 2,-0.0 2,-0.4 -0.758 28.6-135.1-109.1 156.0 3.5 -12.1 -1.4 54 504 A R E -B 63 0A 153 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.913 19.3-174.0-114.0 137.6 6.6 -10.2 -2.6 55 505 A K E -B 62 0A 82 7,-1.9 7,-2.1 -2,-0.4 2,-1.0 -0.968 28.3-120.4-131.0 146.0 8.0 -10.3 -6.2 56 506 A M E +B 61 0A 169 -2,-0.3 2,-0.5 5,-0.2 5,-0.2 -0.732 40.3 169.5 -87.9 101.4 11.1 -8.7 -7.7 57 507 A I - 0 0 60 3,-3.0 3,-0.3 -2,-1.0 -2,-0.0 -0.958 68.0 -14.5-118.4 121.7 10.0 -6.4 -10.5 58 508 A N S S- 0 0 145 -2,-0.5 -1,-0.2 1,-0.2 3,-0.1 0.897 128.4 -54.3 57.1 42.7 12.4 -4.0 -12.2 59 509 A D S S+ 0 0 160 1,-0.2 2,-0.3 -3,-0.2 -1,-0.2 0.859 122.6 101.7 60.3 36.4 14.9 -4.5 -9.4 60 510 A K S S- 0 0 124 -3,-0.3 -3,-3.0 -5,-0.0 2,-0.4 -0.983 76.5-105.8-147.8 156.1 12.2 -3.6 -6.9 61 511 A M E + B 0 56A 62 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.705 40.7 177.4 -87.3 130.8 9.9 -5.2 -4.4 62 512 A H E - B 0 55A 35 -7,-2.1 -7,-1.9 -2,-0.4 2,-0.5 -0.872 26.8-118.8-129.8 162.9 6.2 -5.4 -5.4 63 513 A F E +AB 18 54A 5 -45,-3.4 -45,-1.6 -2,-0.3 2,-0.3 -0.884 30.9 177.5-106.9 131.6 3.0 -6.8 -3.9 64 514 A S E - B 0 53A 4 -11,-1.7 -11,-1.5 -2,-0.5 2,-0.4 -0.974 10.6-162.9-133.5 147.1 1.0 -9.5 -5.7 65 515 A L - 0 0 16 -52,-1.0 2,-0.5 -2,-0.3 -2,-0.0 -0.993 4.8-168.4-132.9 136.4 -2.2 -11.5 -4.8 66 516 A K 0 0 163 -2,-0.4 -52,-0.1 1,-0.2 -2,-0.0 -0.843 360.0 360.0-127.0 94.9 -3.6 -14.6 -6.4 67 517 A E 0 0 232 -2,-0.5 -1,-0.2 -53,-0.0 -53,-0.0 0.940 360.0 360.0 -60.3 360.0 -7.1 -15.4 -5.3 68 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 69 941 B G 0 0 116 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-151.8 16.2 16.3 -2.6 70 942 B S + 0 0 134 2,-0.1 2,-0.3 1,-0.1 0, 0.0 0.814 360.0 26.7 -61.1 -30.7 12.9 17.4 -4.0 71 943 B S + 0 0 59 1,-0.1 -1,-0.1 2,-0.1 0, 0.0 -0.935 61.0 127.4-133.5 156.3 11.2 14.9 -1.7 72 944 B S S > S+ 0 0 71 -2,-0.3 4,-1.4 -3,-0.0 3,-0.3 0.083 75.1 49.2-165.7 -66.0 12.0 13.3 1.7 73 945 B E H > S+ 0 0 140 1,-0.2 4,-1.1 2,-0.2 -2,-0.1 0.856 109.9 57.1 -60.1 -36.0 9.4 13.6 4.4 74 946 B A H > S+ 0 0 46 1,-0.2 4,-0.7 2,-0.2 3,-0.4 0.882 101.3 55.9 -63.2 -39.3 6.8 12.3 1.9 75 947 B D H >> S+ 0 0 63 -3,-0.3 4,-1.4 1,-0.2 3,-1.0 0.890 102.8 55.1 -60.5 -40.7 8.8 9.1 1.3 76 948 B E H 3X S+ 0 0 97 -4,-1.4 4,-1.5 1,-0.2 -1,-0.2 0.810 94.8 69.2 -62.7 -30.3 8.8 8.3 5.0 77 949 B M H 3< S+ 0 0 24 -4,-1.1 4,-0.4 -3,-0.4 -1,-0.2 0.850 106.7 38.2 -56.8 -35.8 5.0 8.5 4.9 78 950 B A H XX S+ 0 0 5 -3,-1.0 4,-1.7 -4,-0.7 3,-0.6 0.762 104.0 69.7 -86.0 -28.4 5.0 5.3 2.8 79 951 B K H 3X S+ 0 0 92 -4,-1.4 4,-2.3 1,-0.2 -2,-0.2 0.854 92.6 60.0 -57.4 -36.3 7.8 3.7 4.7 80 952 B A H 3X S+ 0 0 47 -4,-1.5 4,-1.0 1,-0.2 -1,-0.2 0.886 104.2 49.4 -59.8 -40.5 5.5 3.4 7.7 81 953 B L H X> S+ 0 0 1 -3,-0.6 4,-1.5 -4,-0.4 3,-0.5 0.911 112.4 46.5 -65.8 -44.0 3.1 1.2 5.7 82 954 B E H 3X S+ 0 0 48 -4,-1.7 4,-1.7 1,-0.2 -2,-0.2 0.838 103.4 64.1 -67.4 -33.7 5.9 -1.1 4.4 83 955 B A H 3< S+ 0 0 64 -4,-2.3 4,-0.3 -5,-0.2 -1,-0.2 0.825 103.6 49.2 -59.4 -32.5 7.3 -1.3 8.0 84 956 B E H XX S+ 0 0 87 -4,-1.0 3,-2.0 -3,-0.5 4,-0.5 0.985 113.3 41.0 -71.1 -61.4 4.1 -3.1 9.0 85 957 B L H 3X S+ 0 0 0 -4,-1.5 4,-2.1 1,-0.3 -2,-0.2 0.711 97.2 83.0 -60.5 -19.6 3.9 -5.7 6.2 86 958 B N H 3< S+ 0 0 98 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.790 87.2 56.7 -55.4 -27.9 7.6 -6.1 6.6 87 959 B D H <4 S+ 0 0 117 -3,-2.0 -1,-0.2 -4,-0.3 -2,-0.2 0.991 108.2 40.6 -68.0 -63.4 6.8 -8.5 9.5 88 960 B L H < 0 0 52 -4,-0.5 -2,-0.2 1,-0.3 -1,-0.2 0.785 360.0 360.0 -56.6 -27.6 4.6 -11.0 7.7 89 961 B M < 0 0 78 -4,-2.1 -1,-0.3 -36,-0.1 -2,-0.2 0.658 360.0 360.0 -56.2 360.0 7.1 -10.7 4.8