==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 23-JAN-07 2ON9 . COMPND 2 MOLECULE: VQIVYK PEPTIDE CORRESPONDING TO RESIDUES 306-311 . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.SAMBASHIVAN,M.R.SAWAYA,D.EISENBERG . 12 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1910.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 3 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A V 0 0 123 0, 0.0 2,-0.5 0, 0.0 9,-0.0 0.000 360.0 360.0 360.0 94.5 0.1 -9.5 -0.7 2 2 A Q + 0 0 179 2,-0.0 2,-0.5 0, 0.0 0, 0.0 -0.972 360.0 177.6-118.4 115.2 0.3 -6.0 0.9 3 3 A I - 0 0 99 -2,-0.5 2,-0.4 2,-0.0 0, 0.0 -0.975 2.1-178.6-124.5 119.8 0.3 -5.9 4.7 4 4 A V - 0 0 100 -2,-0.5 2,-0.5 2,-0.0 -2,-0.0 -0.982 9.2-172.2-127.1 126.8 0.7 -2.7 6.7 5 5 A Y 0 0 191 -2,-0.4 -2,-0.0 0, 0.0 0, 0.0 -0.971 360.0 360.0-113.6 114.8 0.8 -2.3 10.4 6 6 A K 0 0 261 -2,-0.5 -2,-0.0 0, 0.0 0, 0.0 -0.757 360.0 360.0-152.8 360.0 0.7 1.3 11.7 7 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 8 1 B V 0 0 133 0, 0.0 2,-0.5 0, 0.0 -5,-0.0 0.000 360.0 360.0 360.0 99.2 2.7 -13.1 8.7 9 2 B Q - 0 0 187 2,-0.0 2,-0.5 0, 0.0 0, 0.0 -0.990 360.0-179.5-121.0 119.8 3.0 -16.5 7.1 10 3 B I - 0 0 90 -2,-0.5 2,-0.5 2,-0.0 0, 0.0 -0.984 2.5-174.9-126.8 122.0 2.8 -16.6 3.3 11 4 B V - 0 0 97 -2,-0.5 2,-0.6 2,-0.0 -2,-0.0 -0.978 9.1-172.8-124.9 122.2 3.0 -19.9 1.3 12 5 B Y 0 0 191 -2,-0.5 -2,-0.0 0, 0.0 0, 0.0 -0.965 360.0 360.0-106.9 116.6 3.1 -20.2 -2.5 13 6 B K 0 0 259 -2,-0.6 -2,-0.0 0, 0.0 0, 0.0 -0.829 360.0 360.0-144.7 360.0 2.9 -23.8 -3.6