==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 24-JAN-07 2ONT . COMPND 2 MOLECULE: CAPSID PROTEIN P24; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (N . AUTHOR D.IVANOV,O.V.TSODIKOV,J.KASANOV,T.ELLENBERGER,G.WAGNER,T.COL . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5898.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 16.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 50.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 148 A T 0 0 111 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 148.5 -4.5 19.8 -3.1 2 149 A S >> - 0 0 34 1,-0.1 3,-1.8 26,-0.0 4,-0.8 -0.618 360.0-109.6 -85.3 162.3 -2.0 16.9 -3.8 3 150 A I T 34 S+ 0 0 19 1,-0.3 3,-0.5 -2,-0.2 22,-0.1 0.821 118.3 58.2 -63.7 -28.3 0.0 15.4 -0.9 4 151 A L T 34 S+ 0 0 73 1,-0.2 -1,-0.3 3,-0.0 0, 0.0 0.541 100.9 58.7 -81.1 -6.8 3.2 17.0 -2.3 5 152 A D T <4 S+ 0 0 108 -3,-1.8 2,-0.8 2,-0.0 -1,-0.2 0.676 74.3 105.3 -94.5 -26.3 1.6 20.5 -2.1 6 153 A I < + 0 0 15 -4,-0.8 2,-0.4 -3,-0.5 -3,-0.0 -0.473 44.7 170.3 -63.2 99.5 0.9 20.5 1.7 7 154 A R - 0 0 196 -2,-0.8 2,-0.3 14,-0.0 -2,-0.0 -0.903 34.2-122.3-104.3 144.1 3.5 22.8 3.2 8 155 A Q - 0 0 75 -2,-0.4 6,-0.1 1,-0.1 -2,-0.0 -0.696 27.9-128.0 -78.0 138.5 3.2 23.9 6.8 9 156 A G - 0 0 31 -2,-0.3 3,-0.2 4,-0.1 -1,-0.1 -0.179 16.4-117.0 -70.6 172.7 3.0 27.7 7.2 10 157 A P S S+ 0 0 150 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.382 117.8 42.1 -93.6 4.3 5.3 29.5 9.6 11 158 A K S S+ 0 0 103 2,-0.1 -2,-0.0 0, 0.0 -3,-0.0 0.141 94.7 108.7-119.6 12.7 2.3 30.7 11.7 12 159 A E S S- 0 0 46 -3,-0.2 2,-0.1 2,-0.0 5,-0.1 -0.812 73.6-121.7 -98.7 125.8 0.6 27.3 11.5 13 160 A P >> - 0 0 75 0, 0.0 4,-1.6 0, 0.0 3,-1.3 -0.434 23.7-124.1 -63.1 136.0 0.4 25.1 14.6 14 161 A F H 3> S+ 0 0 131 1,-0.3 4,-2.1 2,-0.2 5,-0.1 0.698 109.3 55.5 -55.2 -28.2 2.0 21.7 13.9 15 162 A R H 3> S+ 0 0 207 2,-0.2 4,-1.4 1,-0.2 -1,-0.3 0.793 107.1 51.1 -76.4 -29.5 -1.0 19.7 14.8 16 163 A D H <> S+ 0 0 81 -3,-1.3 4,-2.0 2,-0.2 -2,-0.2 0.850 110.4 48.5 -74.7 -37.1 -3.0 21.7 12.3 17 164 A Y H X S+ 0 0 51 -4,-1.6 4,-3.1 2,-0.2 -2,-0.2 0.931 110.2 51.9 -63.3 -47.8 -0.5 21.0 9.6 18 165 A V H X S+ 0 0 46 -4,-2.1 4,-2.2 1,-0.2 -2,-0.2 0.853 109.5 49.5 -58.5 -39.8 -0.5 17.3 10.5 19 166 A D H X S+ 0 0 106 -4,-1.4 4,-2.2 2,-0.2 -1,-0.2 0.901 113.1 46.8 -67.2 -46.1 -4.3 17.2 10.2 20 167 A R H X S+ 0 0 92 -4,-2.0 4,-2.3 2,-0.2 5,-0.3 0.981 111.6 52.2 -55.5 -57.8 -4.2 19.0 6.7 21 168 A F H X S+ 0 0 61 -4,-3.1 4,-3.0 1,-0.2 -2,-0.2 0.898 113.9 42.9 -40.6 -54.7 -1.4 16.6 5.6 22 169 A Y H X S+ 0 0 114 -4,-2.2 4,-2.1 2,-0.2 -1,-0.2 0.794 108.6 54.0 -74.9 -33.6 -3.4 13.5 6.6 23 170 A K H X S+ 0 0 52 -4,-2.2 4,-1.4 -3,-0.2 -1,-0.2 0.949 116.5 42.5 -58.7 -46.3 -6.8 14.6 5.2 24 171 A T H >X S+ 0 0 24 -4,-2.3 4,-2.1 1,-0.2 3,-0.7 0.956 111.7 53.9 -64.0 -50.8 -5.0 15.1 1.8 25 172 A L H 3< S+ 0 0 56 -4,-3.0 -1,-0.2 -5,-0.3 -2,-0.2 0.877 109.1 49.1 -53.8 -39.3 -3.0 11.9 2.2 26 173 A R H 3< S+ 0 0 178 -4,-2.1 -1,-0.3 1,-0.2 -2,-0.2 0.788 109.4 50.9 -71.8 -29.0 -6.2 9.9 2.7 27 174 A A H << S+ 0 0 86 -4,-1.4 -1,-0.2 -3,-0.7 -2,-0.2 0.745 94.5 91.0 -80.5 -26.3 -7.9 11.5 -0.3 28 175 A E S < S- 0 0 45 -4,-2.1 2,-0.5 -5,-0.1 -26,-0.0 -0.312 91.3-108.8 -56.4 148.8 -4.8 10.6 -2.4 29 176 A Q >> - 0 0 57 1,-0.1 4,-1.6 -2,-0.0 3,-1.1 -0.804 22.2-129.1 -89.3 129.8 -5.0 7.3 -4.1 30 177 A S H 3> S+ 0 0 102 -2,-0.5 4,-1.9 1,-0.3 -1,-0.1 0.796 104.9 53.2 -45.7 -45.4 -2.6 4.7 -2.4 31 178 A Q H 3> S+ 0 0 99 2,-0.2 4,-1.6 1,-0.2 -1,-0.3 0.826 106.9 51.7 -65.9 -34.2 -1.0 3.6 -5.7 32 179 A E H <> S+ 0 0 125 -3,-1.1 4,-2.5 2,-0.2 5,-0.2 0.979 111.7 44.5 -64.9 -55.9 -0.1 7.2 -6.8 33 180 A V H X S+ 0 0 38 -4,-1.6 4,-3.5 1,-0.2 -2,-0.2 0.878 110.1 57.5 -58.5 -39.4 1.7 8.2 -3.6 34 181 A K H X S+ 0 0 97 -4,-1.9 4,-2.7 -5,-0.2 -1,-0.2 0.916 110.4 41.1 -56.4 -51.1 3.5 4.8 -3.5 35 182 A N H X S+ 0 0 76 -4,-1.6 4,-2.6 2,-0.2 5,-0.4 0.923 114.6 50.8 -66.7 -44.7 5.1 5.2 -7.0 36 183 A W H X S+ 0 0 118 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.966 113.1 49.5 -56.6 -47.7 5.9 8.8 -6.4 37 184 A M H X S+ 0 0 108 -4,-3.5 4,-1.9 -5,-0.2 -2,-0.2 0.907 114.3 41.7 -45.2 -60.4 7.5 7.7 -3.1 38 185 A T H X S+ 0 0 58 -4,-2.7 4,-2.4 1,-0.2 -1,-0.2 0.831 114.6 49.0 -73.9 -33.1 9.6 4.9 -4.5 39 186 A E H X S+ 0 0 52 -4,-2.6 4,-2.8 2,-0.2 5,-0.3 0.890 108.7 54.7 -69.8 -42.9 10.8 6.8 -7.6 40 187 A T H X S+ 0 0 39 -4,-2.3 4,-2.5 -5,-0.4 -2,-0.2 0.937 111.7 44.3 -53.1 -45.8 11.7 9.7 -5.5 41 188 A L H X S+ 0 0 91 -4,-1.9 4,-1.7 1,-0.2 -2,-0.2 0.905 112.3 52.6 -68.2 -41.4 13.9 7.4 -3.4 42 189 A L H < S+ 0 0 95 -4,-2.4 4,-0.4 1,-0.2 -1,-0.2 0.888 114.0 42.1 -61.6 -39.5 15.3 5.7 -6.4 43 190 A V H >< S+ 0 0 17 -4,-2.8 3,-1.3 1,-0.2 -2,-0.2 0.928 112.5 53.5 -72.0 -42.1 16.3 9.0 -7.9 44 191 A Q H 3< S+ 0 0 122 -4,-2.5 -2,-0.2 -5,-0.3 -1,-0.2 0.765 112.4 45.9 -66.4 -26.2 17.6 10.4 -4.6 45 192 A N T 3< S+ 0 0 116 -4,-1.7 -1,-0.3 -5,-0.2 -2,-0.2 0.440 88.2 106.8 -98.6 -0.8 19.8 7.3 -4.2 46 193 A A S < S- 0 0 28 -3,-1.3 -3,-0.0 -4,-0.4 -4,-0.0 -0.461 82.7 -88.4 -75.3 149.5 21.3 7.2 -7.7 47 194 A N > - 0 0 87 -2,-0.1 4,-2.3 1,-0.1 5,-0.2 0.024 42.0-101.9 -52.1 161.5 24.9 8.2 -8.3 48 195 A P H > S+ 0 0 111 0, 0.0 4,-0.7 0, 0.0 -1,-0.1 0.896 119.4 51.2 -63.0 -35.9 25.7 11.9 -8.9 49 196 A D H >> S+ 0 0 57 2,-0.2 4,-0.8 1,-0.1 3,-0.8 0.967 116.8 36.8 -61.2 -54.8 26.2 11.4 -12.7 50 197 A C H >> S+ 0 0 20 1,-0.2 4,-2.2 2,-0.2 3,-1.3 0.971 107.7 65.0 -61.3 -55.3 22.9 9.5 -13.4 51 198 A K H 3X S+ 0 0 57 -4,-2.3 4,-1.7 1,-0.3 -1,-0.2 0.676 98.3 58.2 -36.9 -30.1 20.9 11.6 -10.9 52 199 A T H < S+ 0 0 20 -4,-2.2 3,-1.0 1,-0.2 -2,-0.2 0.903 110.8 39.6 -60.4 -45.5 17.1 11.8 -14.1 55 202 A K H >< S+ 0 0 138 -4,-1.7 3,-2.3 1,-0.2 -1,-0.2 0.889 108.3 63.8 -70.9 -37.4 16.2 15.2 -12.8 56 203 A A T 3< S+ 0 0 85 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.484 90.6 70.1 -64.2 -2.8 16.8 16.7 -16.3 57 204 A L T < S- 0 0 68 -3,-1.0 -1,-0.3 -4,-0.3 -2,-0.2 0.534 101.2-135.6 -87.3 -10.8 13.9 14.4 -17.5 58 205 A G X - 0 0 36 -3,-2.3 3,-0.8 -4,-0.1 -1,-0.1 0.022 41.9 -33.1 72.4 171.1 11.3 16.5 -15.6 59 206 A P T 3 S+ 0 0 137 0, 0.0 -4,-0.0 0, 0.0 0, 0.0 -0.201 117.9 24.9 -59.8 145.5 8.4 15.2 -13.5 60 207 A G T 3 S+ 0 0 62 1,-0.2 -2,-0.1 -24,-0.0 -24,-0.0 0.445 71.9 161.8 91.1 5.6 6.6 12.0 -14.2 61 208 A A < - 0 0 17 -3,-0.8 -1,-0.2 -7,-0.2 2,-0.1 -0.269 37.1-120.3 -63.4 142.7 9.2 10.0 -16.2 62 209 A T > - 0 0 66 1,-0.1 4,-2.2 4,-0.0 5,-0.1 -0.298 19.9-114.5 -71.3 161.9 8.6 6.3 -16.5 63 210 A L H > S+ 0 0 108 2,-0.2 4,-2.8 1,-0.2 5,-0.3 0.953 120.9 53.4 -63.0 -48.4 11.1 3.7 -15.2 64 211 A E H > S+ 0 0 142 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.945 111.1 46.4 -46.8 -55.4 11.7 2.7 -18.9 65 212 A E H > S+ 0 0 93 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.865 110.6 53.1 -56.4 -38.8 12.4 6.3 -19.7 66 213 A M H X S+ 0 0 14 -4,-2.2 4,-0.9 2,-0.2 -2,-0.2 0.921 114.7 40.0 -63.5 -44.7 14.7 6.7 -16.7 67 214 A M H < S+ 0 0 134 -4,-2.8 3,-0.3 2,-0.2 4,-0.2 0.863 112.5 55.8 -73.6 -39.6 16.8 3.7 -17.7 68 215 A T H >< S+ 0 0 82 -4,-2.9 3,-1.3 -5,-0.3 -2,-0.2 0.952 108.6 48.9 -56.7 -47.8 16.7 4.6 -21.4 69 216 A A H 3< S+ 0 0 34 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.763 108.8 52.9 -67.6 -22.8 18.1 8.0 -20.5 70 217 A C T >< S+ 0 0 23 -4,-0.9 3,-1.3 -3,-0.3 -1,-0.2 0.250 75.0 142.4 -99.7 12.9 21.0 6.6 -18.3 71 218 A Q T < + 0 0 155 -3,-1.3 -3,-0.1 -4,-0.2 -4,-0.0 -0.234 67.1 16.7 -57.2 134.1 22.4 4.1 -20.9 72 219 A G T 3 0 0 88 1,-0.1 -1,-0.2 0, 0.0 -2,-0.1 0.116 360.0 360.0 92.2 -24.0 26.2 3.8 -20.9 73 220 A V < 0 0 113 -3,-1.3 -1,-0.1 -24,-0.0 -2,-0.1 0.794 360.0 360.0 -75.4 360.0 26.9 5.3 -17.4