==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-AUG-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 30-AUG-10 3ONS . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.A.AMODEO,K.Y.HUANG,A.E.MCDERMOTT,L.TONG . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4371.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 68.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 22.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 15.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 51 0, 0.0 16,-3.1 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 162.5 16.6 17.1 9.5 2 2 A Q E +A 16 0A 85 14,-0.2 62,-3.5 12,-0.0 2,-0.3 -0.826 360.0 172.7-104.7 139.5 18.3 14.1 8.0 3 3 A I E -A 15 0A 0 12,-2.1 12,-3.0 -2,-0.4 2,-0.3 -0.932 21.4-131.5-135.4 164.8 21.9 14.0 6.8 4 4 A F E -Ab 14 66A 40 61,-3.1 63,-3.1 -2,-0.3 2,-0.4 -0.846 7.7-158.6-118.6 156.0 24.1 11.2 5.5 5 5 A V E -Ab 13 67A 0 8,-2.3 8,-3.3 -2,-0.3 2,-0.4 -0.986 10.8-161.0-135.7 121.2 27.6 10.1 6.4 6 6 A K E -Ab 12 68A 101 61,-2.9 63,-2.6 -2,-0.4 6,-0.2 -0.885 5.7-155.8-109.1 131.8 29.6 8.0 4.0 7 7 A T > - 0 0 27 4,-2.5 3,-1.3 -2,-0.4 63,-0.1 -0.366 35.9 -97.5 -96.2 178.0 32.6 5.9 5.0 8 8 A L T 3 S+ 0 0 150 61,-0.4 62,-0.1 1,-0.3 -1,-0.1 0.889 123.7 59.6 -64.3 -35.6 35.5 4.6 2.9 9 9 A T T 3 S- 0 0 128 1,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.612 120.5-111.7 -67.1 -9.9 33.8 1.2 2.6 10 10 A G < + 0 0 36 -3,-1.3 -2,-0.1 1,-0.3 -1,-0.1 0.381 67.7 150.5 93.7 -4.7 31.0 3.1 0.9 11 11 A K - 0 0 97 -5,-0.1 -4,-2.5 1,-0.1 2,-0.5 -0.390 37.0-144.9 -62.0 137.4 28.6 2.4 3.8 12 12 A T E -A 6 0A 75 -6,-0.2 2,-0.4 -3,-0.1 -6,-0.2 -0.947 10.2-162.1-113.2 124.0 26.1 5.2 4.2 13 13 A I E -A 5 0A 2 -8,-3.3 -8,-2.3 -2,-0.5 2,-0.5 -0.849 9.1-146.5-101.9 136.0 24.9 6.2 7.7 14 14 A T E -A 4 0A 54 -2,-0.4 2,-0.4 -10,-0.2 -10,-0.2 -0.910 18.9-171.4-106.7 130.6 21.7 8.2 8.1 15 15 A L E -A 3 0A 6 -12,-3.0 -12,-2.1 -2,-0.5 2,-0.6 -0.933 22.9-141.2-124.7 149.6 21.5 10.7 11.0 16 16 A E E +A 2 0A 115 -2,-0.4 2,-0.3 -14,-0.2 -14,-0.2 -0.937 43.2 153.0-103.8 117.4 18.8 12.8 12.5 17 17 A V - 0 0 0 -16,-3.1 -2,-0.0 -2,-0.6 3,-0.0 -0.851 40.6-126.6-139.9 172.4 20.3 16.2 13.4 18 18 A E > - 0 0 96 -2,-0.3 3,-2.2 1,-0.1 38,-0.3 -0.913 30.9-117.5-118.3 151.1 19.4 19.9 13.9 19 19 A P T 3 S+ 0 0 54 0, 0.0 38,-2.4 0, 0.0 37,-0.6 0.804 116.0 59.5 -57.5 -27.6 21.3 22.7 12.1 20 20 A S T 3 S+ 0 0 86 36,-0.2 2,-0.1 35,-0.2 -3,-0.0 0.514 79.7 114.0 -78.8 -5.8 22.4 23.9 15.6 21 21 A D < - 0 0 19 -3,-2.2 35,-1.8 34,-0.1 36,-0.2 -0.455 65.9-128.6 -68.2 138.2 24.1 20.6 16.3 22 22 A T B > -E 55 0B 33 33,-0.2 4,-2.3 -2,-0.1 33,-0.3 -0.394 22.2-109.2 -80.9 164.0 27.9 20.9 16.7 23 23 A I H > S+ 0 0 0 31,-2.2 4,-2.5 28,-0.5 29,-0.2 0.890 122.1 54.2 -61.1 -36.9 30.3 18.6 14.8 24 24 A E H > S+ 0 0 72 30,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.873 106.4 52.3 -66.1 -31.6 31.2 16.9 18.1 25 25 A N H > S+ 0 0 56 2,-0.2 4,-2.1 1,-0.2 -2,-0.2 0.944 109.4 49.3 -65.0 -48.6 27.5 16.2 18.6 26 26 A V H X S+ 0 0 0 -4,-2.3 4,-1.9 1,-0.2 -2,-0.2 0.914 109.3 52.6 -58.4 -42.6 27.3 14.7 15.1 27 27 A K H X S+ 0 0 9 -4,-2.5 4,-2.1 1,-0.2 -1,-0.2 0.893 107.2 51.3 -62.1 -38.4 30.3 12.5 15.9 28 28 A A H X S+ 0 0 44 -4,-2.0 4,-2.5 1,-0.2 -1,-0.2 0.888 107.6 53.7 -65.8 -35.0 28.6 11.2 19.1 29 29 A K H X S+ 0 0 61 -4,-2.1 4,-1.8 2,-0.2 -1,-0.2 0.873 107.3 50.6 -66.1 -35.0 25.6 10.4 17.0 30 30 A I H X S+ 0 0 0 -4,-1.9 4,-2.9 2,-0.2 6,-0.4 0.894 110.5 49.5 -68.4 -38.2 27.8 8.3 14.7 31 31 A Q H X S+ 0 0 81 -4,-2.1 4,-2.7 3,-0.2 -2,-0.2 0.909 106.8 55.9 -65.9 -40.9 29.2 6.6 17.8 32 32 A D H < S+ 0 0 145 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.905 119.1 32.5 -57.9 -40.6 25.7 5.9 19.0 33 33 A K H < S+ 0 0 114 -4,-1.8 -2,-0.2 -5,-0.1 -1,-0.2 0.784 137.1 19.2 -88.3 -27.8 24.9 4.1 15.6 34 34 A E H < S- 0 0 73 -4,-2.9 -3,-0.2 2,-0.1 -2,-0.2 0.514 90.7-121.3-122.9 -9.6 28.3 2.6 14.8 35 35 A G < + 0 0 53 -4,-2.7 -4,-0.2 -5,-0.4 -3,-0.1 0.388 62.9 138.8 83.7 -6.1 30.5 2.4 17.9 36 36 A I - 0 0 38 -6,-0.4 -1,-0.2 -9,-0.1 -2,-0.1 -0.635 55.2-124.2 -77.3 119.6 33.3 4.5 16.5 37 37 A P > - 0 0 34 0, 0.0 3,-1.6 0, 0.0 4,-0.2 -0.287 17.8-120.4 -62.0 145.5 34.6 6.9 19.3 38 38 A P G > S+ 0 0 37 0, 0.0 3,-1.9 0, 0.0 -10,-0.1 0.845 110.4 63.7 -55.7 -36.8 34.5 10.6 18.2 39 39 A D G 3 S+ 0 0 119 1,-0.3 -3,-0.0 3,-0.0 -12,-0.0 0.716 101.4 50.9 -63.5 -19.2 38.2 11.0 18.7 40 40 A Q G < S+ 0 0 83 -3,-1.6 32,-2.7 31,-0.1 2,-0.4 0.356 97.4 91.9 -96.8 4.5 38.8 8.4 15.9 41 41 A Q E < -C 71 0A 0 -3,-1.9 2,-0.4 30,-0.2 30,-0.2 -0.811 47.5-176.4-106.7 141.2 36.5 10.3 13.5 42 42 A R E -C 70 0A 86 28,-1.8 28,-2.7 -2,-0.4 2,-0.5 -0.998 13.8-159.7-128.5 123.4 37.4 13.0 10.9 43 43 A L E -C 69 0A 0 7,-0.4 7,-3.1 -2,-0.4 2,-0.4 -0.931 9.9-172.0-108.5 133.1 34.3 14.5 9.1 44 44 A I E +CD 68 49A 36 24,-2.6 24,-2.9 -2,-0.5 2,-0.3 -0.965 11.9 163.8-127.1 139.4 34.9 16.2 5.8 45 45 A F E > S+ D 0 48A 56 3,-2.0 3,-1.7 -2,-0.4 22,-0.1 -0.946 70.7 3.4-154.5 136.5 32.6 18.2 3.6 46 46 A A T 3 S- 0 0 71 -2,-0.3 3,-0.1 1,-0.3 -1,-0.0 0.864 130.7 -59.1 54.7 38.2 33.3 20.7 0.7 47 47 A G T 3 S+ 0 0 76 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.546 113.8 114.7 72.8 7.8 37.0 19.9 1.1 48 48 A K E < -D 45 0A 114 -3,-1.7 -3,-2.0 3,-0.0 2,-0.6 -0.906 68.0-128.9-114.3 137.3 37.1 21.0 4.7 49 49 A Q E -D 44 0A 69 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.736 37.6-126.6 -77.6 121.7 37.8 19.0 7.9 50 50 A L - 0 0 1 -7,-3.1 -7,-0.4 -2,-0.6 2,-0.3 -0.560 25.9-140.1 -75.1 128.4 34.8 20.0 10.0 51 51 A E > - 0 0 95 -2,-0.4 3,-1.7 4,-0.1 -28,-0.5 -0.665 12.9-109.5 -99.7 145.1 35.9 21.2 13.4 52 52 A D T 3 S+ 0 0 90 -2,-0.3 3,-0.1 1,-0.2 -1,-0.1 -0.274 103.7 41.9 -59.7 148.5 34.5 20.6 16.9 53 53 A G T 3 S+ 0 0 45 1,-0.4 2,-0.3 0, 0.0 -1,-0.2 0.038 97.0 95.1 98.6 -25.6 32.9 23.8 18.3 54 54 A R < - 0 0 152 -3,-1.7 -31,-2.2 1,-0.0 -1,-0.4 -0.692 68.3-133.1 -98.7 153.3 31.3 24.7 15.0 55 55 A T B > -E 22 0B 23 -33,-0.3 4,-1.2 -2,-0.3 -33,-0.2 -0.469 24.8-109.3 -98.5 171.5 27.7 23.8 14.0 56 56 A L T 4>S+ 0 0 0 -35,-1.8 5,-2.6 -37,-0.6 3,-0.3 0.906 122.5 53.7 -65.4 -38.3 26.3 22.3 10.8 57 57 A S T >45S+ 0 0 62 -38,-2.4 3,-1.3 1,-0.2 -1,-0.2 0.866 99.4 60.9 -64.0 -36.4 24.7 25.7 10.2 58 58 A D T 345S+ 0 0 97 -39,-0.3 -1,-0.2 1,-0.3 -2,-0.2 0.887 110.4 42.0 -55.2 -39.8 28.1 27.4 10.6 59 59 A Y T 3<5S- 0 0 55 -4,-1.2 -1,-0.3 -3,-0.3 -2,-0.2 0.421 114.2-119.8 -87.9 1.2 29.3 25.3 7.6 60 60 A N T < 5 + 0 0 112 -3,-1.3 2,-0.8 -4,-0.3 -3,-0.2 0.892 53.9 164.4 61.2 38.2 26.0 25.9 5.7 61 61 A I < - 0 0 4 -5,-2.6 -1,-0.2 -42,-0.1 2,-0.1 -0.821 16.2-171.9 -90.1 112.4 25.4 22.2 5.7 62 62 A Q > - 0 0 112 -2,-0.8 3,-1.4 1,-0.2 -5,-0.0 -0.337 33.5 -48.1 -98.8 179.6 21.8 21.7 4.8 63 63 A K T 3 S+ 0 0 136 1,-0.2 -1,-0.2 -2,-0.1 -60,-0.2 -0.103 120.0 11.2 -48.8 139.5 19.3 18.8 4.7 64 64 A E T 3 S+ 0 0 117 -62,-3.5 -1,-0.2 1,-0.2 -61,-0.2 0.626 83.2 152.0 65.7 18.2 20.5 15.6 3.0 65 65 A S < - 0 0 20 -3,-1.4 -61,-3.1 -63,-0.3 2,-0.6 -0.424 41.4-134.4 -70.7 155.5 24.1 16.6 2.7 66 66 A T E -b 4 0A 52 -63,-0.2 -61,-0.2 -2,-0.1 2,-0.2 -0.945 18.8-159.7-117.3 108.9 26.5 13.6 2.7 67 67 A L E -b 5 0A 0 -63,-3.1 -61,-2.9 -2,-0.6 2,-0.5 -0.550 16.7-124.2 -84.1 155.6 29.5 14.1 4.9 68 68 A H E -bC 6 44A 91 -24,-2.9 -24,-2.6 -63,-0.2 2,-0.5 -0.883 19.4-154.7-103.4 125.3 32.7 12.0 4.4 69 69 A L E + C 0 43A 5 -63,-2.6 2,-0.4 -2,-0.5 -61,-0.4 -0.878 15.5 175.8-102.2 124.5 33.9 10.0 7.4 70 70 A V E - C 0 42A 36 -28,-2.7 -28,-1.8 -2,-0.5 2,-0.2 -0.973 28.9-120.1-124.3 139.8 37.6 9.2 7.5 71 71 A L E C 0 41A 103 -2,-0.4 -30,-0.2 -30,-0.2 -31,-0.1 -0.491 360.0 360.0 -83.8 153.1 39.2 7.4 10.5 72 72 A R 0 0 181 -32,-2.7 -1,-0.0 -2,-0.2 -31,-0.0 -0.903 360.0 360.0-129.7 360.0 41.9 8.9 12.6