==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 30-JAN-07 2OPU . COMPND 2 MOLECULE: KHSRP PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR I.DIAZ-MORENO,A.RAMOS,M.F.GARCIA-MAYORAL,D.HOLLINGWORTH . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5368.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 76.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 15.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 16.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 37.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A I 0 0 161 0, 0.0 2,-0.3 0, 0.0 56,-0.2 0.000 360.0 360.0 360.0 134.4 18.0 5.1 5.2 2 6 A S + 0 0 53 2,-0.1 2,-1.5 54,-0.1 18,-0.1 -0.983 360.0 17.8-153.8 156.5 15.2 5.4 2.7 3 7 A S E S-A 19 0A 41 16,-1.4 2,-2.7 -2,-0.3 16,-1.4 -0.066 74.2-158.0 72.9 -35.7 13.4 3.3 0.1 4 8 A Q E +A 18 0A 78 -2,-1.5 2,-1.5 14,-0.2 14,-0.2 -0.369 15.8 179.9 67.6 -68.2 15.0 0.2 1.6 5 9 A L E -A 17 0A 110 -2,-2.7 12,-1.7 12,-2.0 -1,-0.1 -0.589 47.0 -84.5 70.9 -87.8 14.7 -2.0 -1.5 6 10 A G - 0 0 24 -2,-1.5 -1,-0.1 10,-0.2 9,-0.1 -0.001 30.8-164.3 145.9 99.4 16.3 -5.2 -0.1 7 11 A P S S+ 0 0 128 0, 0.0 2,-0.3 0, 0.0 8,-0.1 0.669 79.7 75.3 -73.2 -17.5 20.0 -6.2 0.1 8 12 A I S S- 0 0 88 6,-0.2 6,-0.1 1,-0.1 0, 0.0 -0.723 74.6-144.2-100.2 147.3 19.0 -9.8 0.7 9 13 A H + 0 0 178 -2,-0.3 -1,-0.1 3,-0.0 6,-0.1 0.627 60.1 114.4 -90.8 -19.1 17.7 -12.0 -2.1 10 14 A P S S- 0 0 45 0, 0.0 5,-0.3 0, 0.0 4,-0.2 0.073 83.1 -52.8 -36.2 163.1 15.0 -14.1 -0.2 11 15 A P >> - 0 0 82 0, 0.0 3,-1.8 0, 0.0 4,-1.7 0.151 69.0 -85.5 -42.6 161.8 11.3 -13.6 -1.1 12 16 A P H 3> S+ 0 0 22 0, 0.0 55,-1.5 0, 0.0 4,-0.5 0.417 108.7 98.3 -60.4 3.6 9.7 -10.1 -1.3 13 17 A R H 34 S- 0 0 174 53,-0.2 55,-0.1 1,-0.1 35,-0.0 0.696 119.2 -8.3 -59.3 -19.9 9.0 -10.4 2.5 14 18 A T H X4 S+ 0 0 46 -3,-1.8 3,-1.0 -4,-0.2 -6,-0.2 0.380 129.7 72.4-151.1 -19.8 12.2 -8.3 2.6 15 19 A S H 3< S+ 0 0 38 -4,-1.7 -2,-0.1 -5,-0.3 51,-0.1 0.479 107.1 43.1 -80.0 -2.5 13.6 -8.3 -1.0 16 20 A M T 3< S+ 0 0 70 -4,-0.5 2,-0.8 -5,-0.3 -1,-0.3 -0.173 75.3 144.1-134.1 39.6 10.7 -5.9 -1.7 17 21 A T E < -A 5 0A 26 -12,-1.7 -12,-2.0 -3,-1.0 2,-0.6 -0.729 27.1-174.5 -79.0 112.8 10.8 -3.7 1.3 18 22 A E E -AB 4 65A 35 47,-1.8 47,-2.4 -2,-0.8 2,-0.9 -0.948 14.8-162.5-114.2 117.3 9.9 -0.3 -0.1 19 23 A E E -AB 3 64A 23 -16,-1.4 -16,-1.4 -2,-0.6 2,-0.6 -0.854 18.9-153.0 -99.5 104.5 10.1 2.6 2.3 20 24 A Y E - B 0 63A 39 43,-3.2 43,-2.0 -2,-0.9 2,-1.2 -0.656 8.7-147.0 -90.2 116.3 8.1 5.2 0.5 21 25 A R E + B 0 62A 128 -2,-0.6 41,-0.2 41,-0.2 40,-0.1 -0.694 34.1 171.0 -81.0 96.1 8.9 8.8 1.2 22 26 A V E - B 0 61A 0 39,-2.5 39,-1.6 -2,-1.2 5,-0.1 -0.944 38.1-110.6-120.1 126.6 5.4 10.3 0.9 23 27 A P >> - 0 0 22 0, 0.0 4,-1.1 0, 0.0 3,-0.8 -0.234 29.8-123.3 -51.4 135.7 4.4 13.9 1.8 24 28 A D H 3> S+ 0 0 101 1,-0.3 4,-1.1 2,-0.2 3,-0.1 0.794 112.4 51.3 -60.5 -30.7 2.1 13.8 4.8 25 29 A G H 3> S+ 0 0 44 1,-0.2 4,-0.8 2,-0.2 -1,-0.3 0.841 106.0 54.5 -72.7 -31.1 -0.7 15.6 3.0 26 30 A M H <> S+ 0 0 27 -3,-0.8 4,-1.5 1,-0.2 -2,-0.2 0.666 102.1 59.0 -78.0 -15.2 -0.4 13.0 0.2 27 31 A V H X S+ 0 0 13 -4,-1.1 4,-1.6 2,-0.2 -1,-0.2 0.836 99.0 56.6 -76.0 -35.9 -0.9 10.4 2.9 28 32 A G H < S+ 0 0 37 -4,-1.1 6,-0.3 1,-0.2 -2,-0.2 0.804 113.8 41.4 -59.2 -28.7 -4.2 12.1 3.6 29 33 A L H < S+ 0 0 98 -4,-0.8 3,-0.3 2,-0.2 -2,-0.2 0.749 105.1 62.2 -89.2 -27.8 -4.9 11.4 -0.0 30 34 A I H < S+ 0 0 1 -4,-1.5 -2,-0.2 1,-0.3 -3,-0.2 0.812 107.0 47.0 -69.2 -28.1 -3.4 7.9 -0.1 31 35 A I S X S- 0 0 38 -4,-1.6 4,-1.8 1,-0.2 6,-1.5 0.597 90.5-179.8 -83.4 -15.0 -6.1 6.9 2.4 32 36 A G T 4 S+ 0 0 38 -3,-0.3 -1,-0.2 1,-0.3 -2,-0.1 -0.285 72.1 41.5 59.1 -89.9 -8.5 8.8 0.1 33 37 A R T 4 S- 0 0 168 -2,-1.1 -1,-0.3 -3,-0.1 3,-0.1 0.305 139.3 -76.5 -74.6 9.7 -11.8 8.3 2.0 34 38 A G T 4 S- 0 0 58 -6,-0.3 -2,-0.2 1,-0.1 -1,-0.1 0.527 100.0 -30.3 108.3 9.5 -9.9 9.0 5.2 35 39 A G S X S+ 0 0 23 -4,-1.8 4,-1.3 -7,-0.1 3,-0.4 -0.089 115.2 87.4 148.7 -39.5 -8.1 5.7 5.7 36 40 A E H > S+ 0 0 95 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.774 79.8 67.5 -64.5 -28.9 -10.2 2.9 4.3 37 41 A Q H > S+ 0 0 58 -6,-1.5 4,-2.1 1,-0.2 -1,-0.2 0.947 103.8 41.7 -60.2 -52.0 -8.8 3.1 0.8 38 42 A I H > S+ 0 0 15 -3,-0.4 4,-3.2 1,-0.2 5,-0.3 0.901 113.8 54.5 -63.4 -37.7 -5.2 2.0 1.7 39 43 A N H X S+ 0 0 83 -4,-1.3 4,-2.2 1,-0.2 5,-0.3 0.914 106.8 51.8 -61.5 -44.0 -6.7 -0.7 3.9 40 44 A K H X S+ 0 0 97 -4,-2.8 4,-2.1 1,-0.2 -1,-0.2 0.955 116.1 39.3 -54.1 -53.4 -8.8 -2.0 1.1 41 45 A I H X S+ 0 0 26 -4,-2.1 4,-2.9 2,-0.2 6,-0.3 0.896 117.4 46.5 -70.7 -42.9 -5.8 -2.3 -1.3 42 46 A Q H X S+ 0 0 38 -4,-3.2 4,-1.2 1,-0.2 5,-0.5 0.833 118.4 43.2 -71.7 -29.3 -3.2 -3.5 1.3 43 47 A Q H < S+ 0 0 136 -4,-2.2 -2,-0.2 -5,-0.3 -1,-0.2 0.819 116.5 48.4 -81.4 -32.4 -5.6 -6.1 2.6 44 48 A D H < S+ 0 0 120 -4,-2.1 -2,-0.2 -5,-0.3 -3,-0.2 0.919 114.4 43.6 -71.9 -46.8 -6.8 -7.1 -0.9 45 49 A S H < S- 0 0 23 -4,-2.9 -2,-0.2 -5,-0.2 -3,-0.2 0.870 105.1-124.9 -67.6 -38.0 -3.3 -7.4 -2.4 46 50 A G < + 0 0 33 -4,-1.2 2,-0.3 1,-0.4 -3,-0.2 0.493 62.9 141.4 97.9 7.9 -2.0 -9.3 0.6 47 51 A C - 0 0 3 -5,-0.5 2,-1.7 -6,-0.3 -1,-0.4 -0.602 59.5-125.1 -85.8 144.8 0.8 -6.8 1.0 48 52 A K + 0 0 140 18,-3.7 2,-0.8 -2,-0.3 19,-0.1 -0.550 41.1 173.2 -88.1 70.5 2.0 -5.7 4.4 49 53 A V - 0 0 4 -2,-1.7 2,-0.5 16,-0.2 16,-0.2 -0.738 5.8-177.4 -86.7 110.7 1.5 -2.0 3.8 50 54 A Q E -C 64 0A 135 14,-2.1 14,-2.7 -2,-0.8 2,-0.5 -0.944 19.7-142.6-114.5 123.3 2.1 -0.1 7.0 51 55 A I E -C 63 0A 44 -2,-0.5 12,-0.2 12,-0.2 3,-0.1 -0.715 16.9-159.8 -79.8 124.5 1.7 3.7 7.2 52 56 A S E +C 62 0A 30 10,-1.5 10,-1.9 -2,-0.5 -2,-0.0 -0.920 21.5 177.5-112.7 109.8 4.4 5.2 9.5 53 57 A P S S+ 0 0 74 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.629 89.0 59.7 -75.1 -16.1 3.7 8.7 10.9 54 58 A D S S- 0 0 140 1,-0.2 2,-2.3 8,-0.1 -2,-0.1 0.816 80.5-179.6 -79.4 -33.3 7.0 8.3 12.8 55 59 A S - 0 0 11 7,-0.3 2,-0.2 1,-0.1 -1,-0.2 -0.416 24.1-139.5 70.4 -74.5 8.8 8.0 9.5 56 60 A G S S+ 0 0 74 -2,-2.3 -1,-0.1 2,-0.4 -54,-0.1 -0.461 83.6 12.8 120.5 -61.5 12.2 7.5 10.9 57 61 A G S S+ 0 0 58 -2,-0.2 -2,-0.1 -56,-0.2 -1,-0.1 0.463 114.5 75.6-123.9 -8.6 14.5 9.5 8.6 58 62 A L - 0 0 34 2,-0.2 -2,-0.4 1,-0.1 4,-0.1 -0.741 67.7-141.5-107.5 152.2 12.0 11.5 6.6 59 63 A P S S+ 0 0 112 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 0.763 91.8 53.2 -79.9 -28.1 10.0 14.6 7.7 60 64 A E S S- 0 0 30 1,-0.2 -2,-0.2 -37,-0.1 2,-0.1 -0.194 110.4 -62.4 -91.4-169.6 7.0 13.4 5.8 61 65 A R E -B 22 0A 82 -39,-1.6 -39,-2.5 -2,-0.1 2,-0.5 -0.396 40.3-150.1 -79.8 153.1 5.4 10.0 6.1 62 66 A S E -BC 21 52A 2 -10,-1.9 -10,-1.5 -41,-0.2 2,-0.6 -0.980 6.6-160.5-124.3 117.9 7.1 6.8 5.3 63 67 A V E -BC 20 51A 0 -43,-2.0 -43,-3.2 -2,-0.5 2,-0.5 -0.871 11.6-145.1 -97.7 124.2 5.0 3.9 4.0 64 68 A S E -BC 19 50A 33 -14,-2.7 -14,-2.1 -2,-0.6 2,-0.5 -0.804 11.7-161.1 -95.6 127.5 6.6 0.5 4.3 65 69 A L E +B 18 0A 0 -47,-2.4 -47,-1.8 -2,-0.5 2,-0.3 -0.910 23.8 144.1-108.5 124.7 5.9 -2.0 1.6 66 70 A T + 0 0 27 -2,-0.5 -18,-3.7 -49,-0.2 2,-0.3 -0.988 20.7 77.4-152.3 156.3 6.4 -5.7 2.0 67 71 A G S S- 0 0 15 -55,-1.5 -52,-0.2 -2,-0.3 -20,-0.1 -0.946 77.0 -14.5 155.9-128.0 4.8 -9.0 1.0 68 72 A A > - 0 0 35 -2,-0.3 4,-3.5 -56,-0.1 5,-0.4 -0.706 68.6 -98.6-111.5 165.4 4.7 -11.2 -2.1 69 73 A P H > S+ 0 0 80 0, 0.0 4,-0.5 0, 0.0 -1,-0.1 0.854 122.8 34.7 -55.7 -40.8 5.7 -10.2 -5.7 70 74 A E H > S+ 0 0 122 2,-0.2 4,-2.4 3,-0.1 5,-0.2 0.818 120.0 48.9 -85.3 -31.9 2.2 -9.5 -6.8 71 75 A S H > S+ 0 0 2 2,-0.2 4,-2.8 1,-0.2 -24,-0.3 0.941 112.4 47.6 -71.0 -46.4 0.9 -8.1 -3.5 72 76 A V H X S+ 0 0 0 -4,-3.5 4,-1.9 1,-0.2 -1,-0.2 0.758 111.7 54.4 -65.0 -23.8 3.8 -5.8 -3.1 73 77 A Q H X S+ 0 0 119 -4,-0.5 4,-1.9 -5,-0.4 -2,-0.2 0.966 109.8 43.1 -72.6 -55.3 3.2 -4.8 -6.8 74 78 A K H X S+ 0 0 83 -4,-2.4 4,-1.6 1,-0.2 -2,-0.2 0.911 116.9 49.8 -55.5 -45.5 -0.5 -3.9 -6.2 75 79 A A H X S+ 0 0 0 -4,-2.8 4,-1.7 1,-0.2 3,-0.3 0.945 113.9 42.4 -58.4 -51.2 0.5 -2.1 -3.0 76 80 A K H X S+ 0 0 31 -4,-1.9 4,-2.9 1,-0.2 -1,-0.2 0.691 104.8 67.6 -75.7 -20.0 3.3 -0.1 -4.5 77 81 A M H X S+ 0 0 91 -4,-1.9 4,-2.3 2,-0.2 -1,-0.2 0.944 104.8 41.4 -59.8 -49.9 1.2 0.6 -7.6 78 82 A M H X S+ 0 0 48 -4,-1.6 4,-2.1 -3,-0.3 5,-0.3 0.890 115.6 51.3 -66.1 -38.6 -1.2 2.8 -5.4 79 83 A L H X S+ 0 0 0 -4,-1.7 4,-2.8 2,-0.2 5,-0.3 0.922 109.3 50.3 -62.3 -44.8 1.9 4.3 -3.7 80 84 A D H X S+ 0 0 89 -4,-2.9 4,-2.2 2,-0.2 5,-0.2 0.923 108.7 54.4 -57.5 -46.0 3.4 5.1 -7.1 81 85 A D H X S+ 0 0 52 -4,-2.3 4,-1.8 2,-0.2 -2,-0.2 0.953 117.5 31.5 -53.7 -59.6 0.2 6.7 -8.2 82 86 A I H X S+ 0 0 9 -4,-2.1 4,-0.8 2,-0.2 5,-0.2 0.901 120.1 50.6 -72.7 -41.2 -0.2 9.2 -5.3 83 87 A V H X S+ 0 0 16 -4,-2.8 4,-3.0 -5,-0.3 5,-0.4 0.810 111.1 51.0 -70.4 -25.3 3.5 9.7 -4.6 84 88 A S H X S+ 0 0 56 -4,-2.2 4,-1.1 -5,-0.3 -1,-0.2 0.900 111.2 46.9 -73.0 -40.8 4.0 10.4 -8.4 85 89 A R H < S+ 0 0 164 -4,-1.8 -2,-0.2 -5,-0.2 -1,-0.2 0.554 124.8 34.4 -77.9 -6.9 1.1 12.9 -8.3 86 90 A G H < S+ 0 0 32 -4,-0.8 -2,-0.2 -5,-0.1 -3,-0.2 0.768 132.3 22.3-111.1 -46.8 2.7 14.5 -5.1 87 91 A R H < S- 0 0 132 -4,-3.0 2,-1.9 -5,-0.2 -3,-0.2 0.445 92.0-134.5-103.0 -4.2 6.5 14.2 -5.4 88 92 A G < 0 0 50 -4,-1.1 -1,-0.1 -5,-0.4 -2,-0.0 -0.480 360.0 360.0 84.8 -68.7 6.6 13.9 -9.2 89 93 A G 0 0 128 -2,-1.9 -1,-0.2 -3,-0.1 -5,-0.1 0.351 360.0 360.0 161.7 360.0 9.1 11.0 -9.3