==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION/DNA 23-APR-98 3ORC . COMPND 2 MOLECULE: DNA (5'-D(*TP*AP*TP*CP*GP*AP*TP*A)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR R.A.ALBRIGHT,M.C.MOSSING,B.W.MATTHEWS . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4620.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 72.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 23.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 32.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A E 0 0 131 0, 0.0 3,-0.1 0, 0.0 41,-0.0 0.000 360.0 360.0 360.0 -2.2 13.2 -7.5 -8.5 2 3 A Q + 0 0 113 39,-0.1 41,-1.5 1,-0.1 2,-0.2 0.378 360.0 22.4-158.1 -21.8 16.4 -6.7 -6.8 3 4 A R E +A 42 0A 155 39,-0.2 2,-0.3 40,-0.0 39,-0.2 -0.772 66.8 153.2-162.0 114.1 16.3 -3.2 -5.5 4 5 A I E -A 41 0A 28 37,-2.4 37,-3.3 -2,-0.2 2,-0.1 -0.922 41.3 -99.9-139.9 165.8 13.4 -0.8 -4.7 5 6 A T E > -A 40 0A 47 -2,-0.3 4,-2.2 35,-0.2 35,-0.2 -0.329 36.7-118.6 -73.8 165.1 12.2 2.1 -2.8 6 7 A L H > S+ 0 0 5 33,-1.5 4,-2.8 31,-0.2 -1,-0.1 0.990 110.3 53.3 -66.3 -61.8 10.1 1.4 0.2 7 8 A K H > S+ 0 0 108 1,-0.2 4,-3.2 2,-0.2 -1,-0.2 0.824 111.8 47.9 -41.1 -42.3 7.0 3.2 -0.9 8 9 A D H > S+ 0 0 42 2,-0.3 4,-2.6 1,-0.2 -1,-0.2 0.997 109.0 49.2 -66.0 -60.8 7.1 1.2 -4.0 9 10 A Y H X S+ 0 0 10 -4,-2.2 4,-2.2 1,-0.3 -2,-0.2 0.739 112.3 55.3 -45.8 -31.8 7.6 -2.1 -2.2 10 11 A A H X S+ 0 0 8 -4,-2.8 4,-2.9 2,-0.2 -1,-0.3 0.992 103.8 49.9 -62.7 -67.4 4.7 -0.8 -0.2 11 12 A M H < S+ 0 0 142 -4,-3.2 -2,-0.2 2,-0.2 -1,-0.2 0.840 117.0 44.7 -43.0 -42.5 2.5 -0.3 -3.1 12 13 A R H < S+ 0 0 146 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.990 129.1 15.9 -66.2 -76.5 3.3 -3.7 -4.3 13 14 A F H X S- 0 0 104 -4,-2.2 4,-0.7 1,-0.1 5,-0.2 0.202 104.9-113.8 -85.5 8.4 3.1 -6.0 -1.1 14 15 A G H X - 0 0 32 -4,-2.9 4,-2.2 -5,-0.2 3,-0.4 0.676 29.3 -85.3 64.4 133.4 1.2 -3.8 1.4 15 16 A Q H > S+ 0 0 46 1,-0.3 4,-1.8 2,-0.2 5,-0.2 0.704 124.9 57.8 -40.2 -31.3 2.3 -2.2 4.6 16 17 A T H > S+ 0 0 98 2,-0.2 4,-1.8 1,-0.2 -1,-0.3 0.999 109.1 40.1 -68.2 -62.7 1.5 -5.3 6.5 17 18 A K H X S+ 0 0 92 -4,-0.7 4,-2.1 -3,-0.4 -2,-0.2 0.844 116.3 53.6 -51.1 -42.7 3.7 -7.7 4.5 18 19 A T H X S+ 0 0 0 -4,-2.2 4,-2.0 -5,-0.2 5,-0.3 0.987 106.4 51.1 -52.4 -68.2 6.4 -5.1 4.4 19 20 A A H X>S+ 0 0 4 -4,-1.8 4,-3.3 1,-0.2 5,-1.8 0.769 109.5 48.8 -31.7 -61.4 6.5 -4.5 8.1 20 21 A K H <5S+ 0 0 71 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.939 110.1 52.1 -51.4 -55.2 6.8 -8.1 9.0 21 22 A D H <5S+ 0 0 64 -4,-2.1 -1,-0.3 1,-0.3 -2,-0.2 0.831 114.9 41.1 -51.5 -45.6 9.6 -8.6 6.5 22 23 A L H <5S- 0 0 28 -4,-2.0 -1,-0.3 -5,-0.1 -2,-0.2 0.881 109.6-128.7 -71.6 -33.6 11.6 -5.6 7.9 23 24 A G T <5 + 0 0 60 -4,-3.3 2,-0.3 1,-0.3 -3,-0.2 0.795 66.9 114.2 88.2 40.4 10.7 -6.7 11.3 24 25 A V S > - 0 0 209 -2,-0.3 3,-3.8 1,-0.1 4,-0.8 -0.709 37.5-124.7 -86.2 129.5 6.0 -2.2 13.6 26 27 A Q H 3> S+ 0 0 82 -2,-0.4 4,-1.6 1,-0.3 5,-0.3 0.769 113.5 54.4 -31.9 -46.5 3.5 -1.4 10.8 27 28 A S H 3> S+ 0 0 81 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.844 96.6 66.2 -63.6 -31.7 3.0 2.0 12.0 28 29 A A H <> S+ 0 0 42 -3,-3.8 4,-1.6 1,-0.2 -1,-0.2 0.896 106.0 45.3 -52.3 -45.2 6.7 2.4 11.8 29 30 A I H X S+ 0 0 1 -4,-0.8 4,-2.9 2,-0.2 5,-0.3 0.949 108.6 45.5 -62.4 -71.5 6.4 2.1 8.1 30 31 A N H X S+ 0 0 62 -4,-1.6 4,-4.2 1,-0.3 5,-0.2 0.865 115.0 53.5 -49.6 -33.8 3.5 4.3 6.9 31 32 A K H X S+ 0 0 153 -4,-1.7 4,-1.7 -5,-0.3 -1,-0.3 0.980 107.6 50.0 -64.5 -48.6 4.9 6.9 9.1 32 33 A A H >< S+ 0 0 2 -4,-1.6 3,-0.7 1,-0.2 5,-0.5 0.940 115.7 41.6 -51.8 -55.5 8.2 6.5 7.4 33 34 A I H >< S+ 0 0 39 -4,-2.9 3,-3.5 1,-0.3 -1,-0.2 0.951 109.7 59.2 -57.9 -48.0 6.6 6.8 4.1 34 35 A H H 3< S+ 0 0 139 -4,-4.2 -1,-0.3 1,-0.3 -2,-0.2 0.773 109.0 45.1 -52.9 -24.7 4.4 9.6 5.4 35 36 A A T << S- 0 0 68 -4,-1.7 -1,-0.3 -3,-0.7 -2,-0.2 0.419 111.1-130.2 -96.9 -2.8 7.6 11.4 6.1 36 37 A G < + 0 0 62 -3,-3.5 2,-0.4 -4,-0.3 -3,-0.2 0.961 37.6 175.5 47.7 77.0 9.0 10.5 2.7 37 38 A R - 0 0 106 -5,-0.5 2,-1.4 2,-0.0 -31,-0.2 -0.907 37.7-113.0-110.1 138.7 12.5 9.1 3.7 38 39 A K + 0 0 144 -2,-0.4 16,-2.6 16,-0.2 2,-0.4 -0.551 53.9 156.7 -74.7 92.9 14.8 7.6 1.1 39 40 A I E - B 0 53A 0 -2,-1.4 -33,-1.5 14,-0.3 2,-0.4 -0.954 20.4-167.0-120.8 145.2 14.8 4.0 2.0 40 41 A F E -AB 5 52A 69 12,-2.1 12,-1.5 -2,-0.4 2,-0.4 -0.919 5.3-153.1-131.8 155.4 15.6 1.2 -0.3 41 42 A L E -AB 4 51A 0 -37,-3.3 -37,-2.4 -2,-0.4 2,-0.3 -0.966 4.9-154.1-131.3 144.8 15.3 -2.4 -0.0 42 43 A T E -AB 3 50A 19 8,-2.0 8,-1.0 -2,-0.4 2,-0.5 -0.798 11.2-135.9-115.6 157.6 17.2 -5.2 -1.6 43 44 A I E - B 0 49A 44 -41,-1.5 4,-0.2 -2,-0.3 6,-0.2 -0.753 8.5-149.6-124.0 95.0 16.1 -8.7 -2.4 44 45 A N E >> - B 0 48A 68 4,-2.5 4,-1.2 -2,-0.5 3,-0.6 -0.338 35.6-112.2 -56.1 127.6 18.5 -11.6 -1.6 45 46 A A T 34 S+ 0 0 113 1,-0.3 -1,-0.2 2,-0.2 -2,-0.0 0.671 119.6 69.7 -32.6 -31.2 17.7 -14.3 -4.3 46 47 A D T 34 S- 0 0 127 1,-0.1 -1,-0.3 2,-0.1 -2,-0.2 -0.028 125.4-106.2 -81.1 28.5 16.4 -16.3 -1.3 47 48 A G T <4 S+ 0 0 54 -3,-0.6 2,-0.3 -4,-0.2 -2,-0.2 0.593 74.2 148.4 55.8 14.6 13.6 -13.7 -1.4 48 49 A S E < -B 44 0A 32 -4,-1.2 -4,-2.5 -5,-0.1 -1,-0.2 -0.635 33.9-147.5 -83.4 132.3 15.1 -12.1 1.8 49 50 A V E +B 43 0A 29 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.565 18.7 174.0 -97.2 164.3 14.7 -8.3 2.1 50 51 A Y E -B 42 0A 123 -8,-1.0 -8,-2.0 -2,-0.2 2,-0.3 -0.977 11.1-152.4-163.6 148.6 16.8 -5.6 3.7 51 52 A A E +BC 41 62A 5 11,-0.6 11,-0.7 -2,-0.3 2,-0.3 -0.822 13.0 177.1-126.5 170.7 16.7 -1.9 3.9 52 53 A E E -BC 40 61A 35 -12,-1.5 -12,-2.1 -2,-0.3 2,-0.4 -0.863 19.9-141.9-169.9 128.5 18.8 1.1 4.3 53 54 A E E -BC 39 60A 29 7,-0.9 7,-1.9 8,-0.5 2,-1.4 -0.799 18.1-128.7 -99.3 142.4 17.9 4.7 4.3 54 55 A V + 0 0 58 -16,-2.6 5,-0.3 -2,-0.4 -16,-0.2 -0.680 37.2 174.0 -88.8 86.8 20.2 7.3 2.7 55 56 A K - 0 0 150 -2,-1.4 2,-0.3 3,-0.5 -1,-0.2 0.974 58.9 -26.2 -58.6 -82.8 20.5 9.7 5.6 56 57 A D S S- 0 0 129 2,-0.6 2,-2.7 0, 0.0 -1,-0.2 -0.803 116.6 -46.5-143.2 87.9 22.9 12.6 4.8 57 58 A G S S+ 0 0 70 -2,-0.3 2,-0.2 -3,-0.2 -2,-0.1 -0.180 130.0 90.3 80.0 -49.2 25.5 11.7 2.4 58 59 A E S S- 0 0 117 -2,-2.7 2,-0.6 -4,-0.1 -2,-0.6 -0.518 73.8-141.3 -80.7 142.8 25.7 8.6 4.6 59 60 A V + 0 0 79 -5,-0.3 -5,-0.2 -2,-0.2 -1,-0.0 -0.931 27.1 179.8-106.0 108.4 23.7 5.5 4.1 60 61 A K E -C 53 0A 75 -7,-1.9 -7,-0.9 -2,-0.6 4,-0.1 -0.491 27.3 -95.3 -99.7 176.1 22.5 4.1 7.5 61 62 A P E -C 52 0A 81 0, 0.0 -8,-0.5 0, 0.0 3,-0.3 -0.046 34.8 -98.4 -85.8-172.3 20.5 1.0 8.1 62 63 A F E S+C 51 0A 24 -11,-0.7 -11,-0.6 1,-0.7 2,-0.1 -0.796 106.4 19.9-161.9 112.8 16.9 0.4 8.6 63 64 A P S S- 0 0 63 0, 0.0 -1,-0.7 0, 0.0 -12,-0.1 0.597 75.6-158.9 -84.6 173.3 16.0 0.2 11.2 64 65 A S 0 0 92 -3,-0.3 -2,-0.0 -2,-0.1 0, 0.0 0.137 360.0 360.0 -91.1 7.8 18.8 1.8 13.3 65 66 A N 0 0 190 0, 0.0 -3,-0.1 0, 0.0 0, 0.0 -0.371 360.0 360.0-137.4 360.0 18.1 0.1 16.9