==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 21-MAR-03 1OTI . COMPND 2 MOLECULE: PHOTOACTIVE YELLOW PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HALORHODOSPIRA HALOPHILA; . AUTHOR S.ANDERSON,S.CROSSON,K.MOFFAT . 125 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6526.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 82 65.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 30 24.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 157 0, 0.0 25,-0.2 0, 0.0 24,-0.1 0.000 360.0 360.0 360.0 130.5 9.0 37.8 6.7 2 2 A E - 0 0 56 23,-1.5 2,-1.2 20,-0.3 25,-0.3 -0.405 360.0-128.1 -62.8 141.5 8.9 41.5 8.0 3 3 A H + 0 0 178 23,-0.1 2,-0.4 2,-0.0 -1,-0.1 -0.655 61.6 123.1 -96.0 86.0 7.4 41.7 11.4 4 4 A V - 0 0 18 -2,-1.2 23,-0.4 11,-0.0 2,-0.3 -0.989 52.1-136.6-134.5 127.1 4.6 44.4 11.1 5 5 A A > - 0 0 60 -2,-0.4 3,-1.8 1,-0.1 6,-0.1 -0.678 24.8-105.3 -94.6 142.0 1.0 43.6 11.9 6 6 A F T 3 S+ 0 0 35 -2,-0.3 -1,-0.1 1,-0.3 117,-0.0 -0.383 106.8 20.4 -53.3 133.6 -2.0 44.6 9.7 7 7 A G T 3 S+ 0 0 22 1,-0.2 -1,-0.3 101,-0.1 2,-0.1 0.512 83.8 160.5 83.4 5.9 -3.8 47.5 11.4 8 8 A S X - 0 0 35 -3,-1.8 3,-1.7 1,-0.1 -1,-0.2 -0.388 46.8-124.4 -62.7 142.5 -0.9 48.6 13.7 9 9 A E T 3 S+ 0 0 151 1,-0.3 3,-0.2 2,-0.1 -1,-0.1 0.755 108.5 33.2 -57.9 -31.6 -1.2 52.1 15.0 10 10 A D T >> S+ 0 0 89 1,-0.2 4,-1.6 2,-0.1 3,-1.5 0.029 76.9 127.7-117.3 30.8 2.1 53.2 13.6 11 11 A I H <> S+ 0 0 0 -3,-1.7 4,-2.4 1,-0.3 5,-0.2 0.815 70.4 57.8 -59.2 -36.4 2.2 51.1 10.5 12 12 A E H 3> S+ 0 0 33 -4,-0.2 4,-1.1 -3,-0.2 101,-0.5 0.789 103.8 53.6 -69.3 -24.7 3.0 54.1 8.3 13 13 A N H <> S+ 0 0 76 -3,-1.5 4,-0.7 2,-0.2 -2,-0.2 0.910 110.9 46.5 -70.4 -41.1 6.1 54.9 10.4 14 14 A T H >< S+ 0 0 37 -4,-1.6 3,-0.9 1,-0.2 -2,-0.2 0.939 113.0 47.2 -65.0 -45.3 7.4 51.3 9.9 15 15 A L H >< S+ 0 0 4 -4,-2.4 3,-1.5 1,-0.2 -1,-0.2 0.768 98.9 69.1 -73.4 -17.9 6.8 51.2 6.2 16 16 A A H 3< S+ 0 0 60 -4,-1.1 -1,-0.2 1,-0.3 -2,-0.2 0.801 99.4 52.8 -66.6 -24.5 8.4 54.6 5.6 17 17 A K T << S+ 0 0 167 -3,-0.9 2,-0.3 -4,-0.7 -1,-0.3 0.512 95.3 94.3 -85.7 -4.7 11.6 52.9 6.5 18 18 A M < - 0 0 26 -3,-1.5 2,-0.1 -4,-0.2 -3,-0.0 -0.717 57.9-149.9-101.3 139.6 11.2 50.1 4.0 19 19 A D > - 0 0 89 -2,-0.3 4,-2.2 1,-0.1 5,-0.2 -0.219 43.1 -89.2 -86.3-176.0 12.5 49.6 0.4 20 20 A D H > S+ 0 0 116 1,-0.2 4,-1.4 2,-0.2 -1,-0.1 0.926 124.9 55.5 -65.3 -42.7 10.7 47.6 -2.2 21 21 A G H 4 S+ 0 0 46 1,-0.2 3,-0.5 2,-0.2 -1,-0.2 0.940 109.9 46.2 -58.8 -45.1 12.4 44.4 -1.4 22 22 A Q H >4 S+ 0 0 76 1,-0.2 3,-2.2 2,-0.2 -20,-0.3 0.860 103.2 62.5 -68.8 -33.9 11.3 44.6 2.2 23 23 A L H >< S+ 0 0 3 -4,-2.2 3,-1.4 1,-0.3 22,-0.3 0.860 97.1 60.4 -57.8 -30.8 7.7 45.5 1.3 24 24 A D T 3< S+ 0 0 70 -4,-1.4 -1,-0.3 -3,-0.5 -2,-0.2 0.598 95.3 63.0 -72.5 -9.8 7.5 42.1 -0.4 25 25 A G T < S+ 0 0 21 -3,-2.2 -23,-1.5 -4,-0.2 -1,-0.2 0.418 78.4 115.4 -93.8 5.6 8.2 40.5 3.0 26 26 A L < - 0 0 6 -3,-1.4 19,-0.1 -4,-0.2 -23,-0.1 -0.422 69.1-133.2 -75.1 152.8 5.0 41.8 4.6 27 27 A A S S+ 0 0 69 -23,-0.4 2,-0.3 -25,-0.3 -1,-0.1 0.523 87.6 43.5 -81.7 -6.1 2.3 39.3 5.7 28 28 A F S S- 0 0 8 95,-0.1 18,-0.3 -23,-0.0 17,-0.3 -0.867 96.5 -85.1-133.9 166.5 -0.4 41.4 4.0 29 29 A G E -A 122 0A 0 93,-2.4 93,-2.2 16,-0.3 2,-0.4 -0.475 41.1-172.3 -72.2 143.3 -1.0 43.2 0.7 30 30 A A E +A 121 0A 0 91,-0.2 13,-2.3 -2,-0.2 2,-0.4 -0.991 8.8 178.3-142.5 128.6 0.3 46.8 0.4 31 31 A I E -AB 120 42A 0 89,-2.3 89,-2.7 -2,-0.4 2,-0.5 -0.988 15.0-152.7-126.1 133.1 -0.3 49.2 -2.4 32 32 A Q E -AB 119 41A 29 9,-2.2 8,-3.2 -2,-0.4 9,-1.4 -0.952 19.3-175.2-106.6 128.8 1.1 52.8 -2.3 33 33 A L E -AB 118 39A 0 85,-3.4 85,-2.5 -2,-0.5 6,-0.2 -0.901 22.1-130.4-116.9 152.7 -0.9 55.3 -4.3 34 34 A D > - 0 0 42 4,-1.9 3,-1.8 -2,-0.3 83,-0.1 -0.259 50.1 -86.4 -83.2-177.7 -0.5 59.0 -5.2 35 35 A G T 3 S+ 0 0 30 81,-0.4 48,-0.1 1,-0.3 82,-0.1 0.647 130.0 53.6 -71.3 -12.8 -3.4 61.3 -4.6 36 36 A D T 3 S- 0 0 121 2,-0.1 -1,-0.3 47,-0.0 27,-0.2 0.409 122.1-103.8 -94.6 -1.5 -4.9 60.5 -8.1 37 37 A G < + 0 0 0 -3,-1.8 25,-3.0 1,-0.3 2,-0.2 0.562 67.8 152.7 89.1 12.3 -4.8 56.8 -7.4 38 38 A N B -E 61 0B 50 23,-0.3 -4,-1.9 24,-0.1 2,-0.6 -0.548 50.2-113.4 -74.3 139.9 -1.8 56.0 -9.6 39 39 A I E +B 33 0A 2 21,-2.8 20,-2.3 18,-0.3 -6,-0.2 -0.660 40.8 167.5 -83.5 118.8 0.1 52.9 -8.3 40 40 A L E S+ 0 0 75 -8,-3.2 2,-0.3 -2,-0.6 -7,-0.2 0.772 71.0 8.0 -95.3 -37.0 3.5 53.7 -6.9 41 41 A Q E -B 32 0A 45 -9,-1.4 -9,-2.2 16,-0.1 -1,-0.4 -0.981 57.0-179.4-147.2 152.0 4.3 50.3 -5.2 42 42 A Y E -B 31 0A 11 -2,-0.3 -11,-0.2 -11,-0.2 16,-0.1 -0.892 23.0-140.6-155.8 112.4 2.5 47.0 -5.1 43 43 A N > - 0 0 0 -13,-2.3 4,-1.7 -2,-0.3 3,-0.3 -0.253 22.2-109.3 -90.7 173.2 3.9 44.1 -3.1 44 44 A A H > S+ 0 0 37 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.877 115.0 56.7 -65.2 -37.7 4.2 40.4 -3.6 45 45 A A H > S+ 0 0 18 -17,-0.3 4,-1.1 -22,-0.3 -16,-0.3 0.883 105.4 52.4 -64.9 -35.6 1.5 39.5 -1.0 46 46 A Q H >> S+ 0 0 2 -18,-0.3 4,-2.2 -3,-0.3 3,-0.6 0.921 107.5 51.5 -64.3 -45.5 -1.0 41.7 -2.8 47 47 A G H 3X S+ 0 0 9 -4,-1.7 4,-2.3 1,-0.2 -2,-0.2 0.866 104.5 58.1 -61.4 -30.6 -0.3 39.9 -6.1 48 48 A D H 3< S+ 0 0 132 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.806 110.3 43.8 -66.6 -30.7 -0.8 36.6 -4.3 49 49 A I H << S+ 0 0 20 -4,-1.1 -2,-0.2 -3,-0.6 -1,-0.2 0.911 126.9 27.1 -76.2 -42.9 -4.4 37.7 -3.4 50 50 A T H < S- 0 0 13 -4,-2.2 -2,-0.2 2,-0.2 -3,-0.2 0.580 94.5-122.7-104.8 -9.3 -5.3 39.2 -6.7 51 51 A G < + 0 0 71 -4,-2.3 2,-0.4 -5,-0.3 -4,-0.1 0.630 65.9 134.9 74.3 11.7 -3.4 37.4 -9.4 52 52 A R - 0 0 39 -6,-0.3 -1,-0.3 -5,-0.2 -2,-0.2 -0.749 58.5-125.7 -91.6 139.8 -1.8 40.6 -10.7 53 53 A D >> - 0 0 70 -2,-0.4 4,-1.1 1,-0.2 3,-1.0 -0.724 16.7-143.0 -80.4 118.5 1.9 40.8 -11.5 54 54 A P H >> S+ 0 0 19 0, 0.0 4,-1.5 0, 0.0 3,-0.9 0.907 97.6 58.9 -50.3 -43.4 3.2 43.7 -9.5 55 55 A K H 34 S+ 0 0 148 1,-0.3 3,-0.1 2,-0.2 -2,-0.0 0.854 107.3 48.0 -59.4 -30.1 5.6 44.7 -12.2 56 56 A Q H <4 S+ 0 0 131 -3,-1.0 -1,-0.3 1,-0.2 4,-0.0 0.734 110.3 47.1 -86.4 -17.7 2.8 45.1 -14.6 57 57 A V H X< S+ 0 0 10 -4,-1.1 3,-2.3 -3,-0.9 -18,-0.3 0.676 80.0 110.9 -96.0 -15.2 0.4 47.2 -12.6 58 58 A I T 3< S+ 0 0 76 -4,-1.5 -18,-0.2 1,-0.3 3,-0.1 -0.436 84.9 22.3 -63.5 128.5 2.9 49.8 -11.3 59 59 A G T 3 S+ 0 0 55 -20,-2.3 -1,-0.3 1,-0.4 2,-0.1 0.150 99.1 111.9 100.1 -16.4 2.1 53.1 -12.9 60 60 A K S < S- 0 0 104 -3,-2.3 -21,-2.8 -22,-0.1 2,-0.6 -0.402 77.0-101.8 -80.2 166.4 -1.5 52.3 -13.7 61 61 A N B >> -E 38 0B 26 -23,-0.2 4,-2.1 1,-0.2 5,-1.9 -0.767 24.4-152.1 -92.3 126.3 -4.5 53.9 -12.1 62 62 A F I 4>S+ 0 0 6 -25,-3.0 5,-2.8 -2,-0.6 8,-0.2 0.909 91.3 39.6 -64.8 -42.2 -6.0 51.8 -9.5 63 63 A F I 45S+ 0 0 3 -26,-0.2 8,-0.2 -27,-0.2 -1,-0.2 0.789 124.5 35.5 -82.5 -26.3 -9.6 53.1 -9.7 64 64 A K I 45S+ 0 0 164 -27,-0.1 -2,-0.2 6,-0.1 -1,-0.1 0.884 133.4 11.9 -90.8 -43.1 -9.8 53.5 -13.4 65 65 A D I <5S+ 0 0 75 -4,-2.1 -3,-0.2 2,-0.1 -2,-0.1 0.799 127.4 33.0-107.6 -47.7 -7.8 50.6 -14.8 66 66 A V I < + 0 0 13 -5,-2.8 3,-2.3 -6,-0.3 4,-0.3 -0.519 58.6 162.2-131.0 67.1 -9.7 47.7 -9.7 68 68 A P G > S+ 0 0 48 0, 0.0 3,-1.9 0, 0.0 -1,-0.1 0.781 73.4 69.4 -62.4 -25.1 -12.9 49.1 -11.2 69 69 A C G 3 S+ 0 0 32 1,-0.3 26,-0.1 -3,-0.1 -6,-0.1 0.662 94.5 56.9 -66.0 -18.7 -15.0 47.4 -8.5 70 70 A T G < S+ 0 0 0 -3,-2.3 6,-2.2 -8,-0.2 2,-1.7 0.416 76.7 101.0 -88.4 -3.2 -13.4 49.9 -6.0 71 71 A D < + 0 0 94 -3,-1.9 -1,-0.1 -4,-0.3 3,-0.0 -0.663 62.7 103.9 -81.4 86.2 -14.7 52.9 -8.0 72 72 A S S > >S- 0 0 22 -2,-1.7 5,-2.5 1,-0.0 3,-1.3 -0.952 88.6-103.4-159.3 156.5 -17.6 53.4 -5.6 73 73 A P T 3 >S+ 0 0 97 0, 0.0 5,-0.6 0, 0.0 6,-0.1 0.820 118.0 62.2 -58.5 -31.2 -18.5 55.8 -2.8 74 74 A E T 3 5S+ 0 0 113 3,-0.2 -3,-0.1 4,-0.1 -4,-0.0 0.609 125.2 6.3 -69.9 -17.7 -17.6 53.1 -0.3 75 75 A F T <>5S+ 0 0 0 -3,-1.3 4,-2.3 -5,-0.2 3,-0.3 0.524 137.4 33.8-130.8 -77.7 -13.9 52.8 -1.4 76 76 A Y H >5S+ 0 0 86 -6,-2.2 4,-2.8 -4,-0.3 5,-0.2 0.897 118.9 55.2 -54.3 -42.4 -12.8 55.4 -4.0 77 77 A G H > - 0 0 8 5,-2.7 3,-1.6 1,-0.1 5,-0.2 -0.317 32.9-101.4 -71.6 163.1 1.7 57.8 4.4 113 113 A L T 3 S+ 0 0 99 -101,-0.5 -1,-0.1 1,-0.3 -100,-0.1 0.827 123.0 49.2 -57.6 -39.8 4.0 59.3 7.0 114 114 A S T 3 S- 0 0 89 1,-0.1 -1,-0.3 0, 0.0 -2,-0.0 0.619 105.6-129.7 -79.2 -14.0 5.0 62.2 4.7 115 115 A G S < S+ 0 0 25 -3,-1.6 -2,-0.1 2,-0.2 -1,-0.1 0.552 85.4 89.8 86.3 5.2 1.4 63.0 3.8 116 116 A D S S+ 0 0 114 -82,-0.0 -81,-0.4 -5,-0.0 2,-0.3 0.211 86.1 42.9-121.8 14.3 1.7 63.0 0.0 117 117 A S S S- 0 0 8 -5,-0.2 -5,-2.7 -83,-0.1 2,-0.4 -0.935 72.1-139.8-153.3 165.2 1.0 59.4 -0.7 118 118 A Y E -AD 33 111A 17 -85,-2.5 -85,-3.4 -2,-0.3 2,-0.4 -0.994 6.7-139.3-137.8 136.8 -1.5 56.9 0.6 119 119 A W E -AD 32 110A 8 -9,-3.2 -9,-2.1 -2,-0.4 2,-0.5 -0.816 5.9-164.6-100.7 145.0 -1.4 53.3 1.5 120 120 A V E -AD 31 109A 0 -89,-2.7 -89,-2.3 -2,-0.4 2,-0.4 -0.996 14.3-169.2-120.0 117.8 -4.0 50.6 0.8 121 121 A F E -AD 30 108A 0 -13,-3.0 -13,-2.4 -2,-0.5 2,-0.4 -0.909 6.0-172.7-110.3 138.8 -3.4 47.5 3.0 122 122 A V E +AD 29 107A 0 -93,-2.2 -93,-2.4 -2,-0.4 2,-0.3 -0.987 12.3 169.8-133.9 137.8 -5.3 44.3 2.3 123 123 A K E - D 0 106A 76 -17,-2.1 -17,-2.7 -2,-0.4 -95,-0.1 -0.995 36.4-104.1-138.8 155.1 -5.8 41.0 3.9 124 124 A R E D 0 105A 144 -2,-0.3 -19,-0.2 -19,-0.2 -75,-0.0 -0.433 360.0 360.0 -67.3 150.7 -8.1 38.0 3.3 125 125 A V 0 0 95 -21,-1.6 -21,-0.3 -2,-0.1 -1,-0.0 -0.881 360.0 360.0-129.5 360.0 -11.0 37.4 5.6