==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-FEB-07 2OTR . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN HP0892; . SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; . AUTHOR K.D.HAN,S.J.PARK,S.B.JANG,B.J.LEE . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6514.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 63.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 23.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 211 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-175.7 1.7 -6.4 14.9 2 2 A L - 0 0 43 75,-0.1 75,-0.3 1,-0.1 74,-0.1 -0.811 360.0-134.9 -97.6 130.8 2.8 -6.8 11.2 3 3 A T E -a 77 0A 85 73,-1.4 75,-2.1 -2,-0.5 2,-0.5 0.064 20.1-111.3 -68.5-174.5 6.2 -5.6 10.1 4 4 A I E -a 78 0A 41 73,-0.2 75,-0.2 75,-0.1 2,-0.2 -0.957 32.6-176.6-130.3 114.7 6.9 -3.5 7.0 5 5 A E E -a 79 0A 95 73,-3.3 75,-2.0 -2,-0.5 2,-0.3 -0.640 9.6-149.1-105.6 164.5 8.8 -5.0 4.0 6 6 A T - 0 0 58 -2,-0.2 2,-0.1 73,-0.2 75,-0.1 -0.963 3.7-149.6-134.8 151.3 9.9 -3.4 0.8 7 7 A S > - 0 0 28 -2,-0.3 4,-0.9 74,-0.2 74,-0.1 -0.311 30.4-103.2-105.3-169.5 10.5 -4.6 -2.8 8 8 A K H > S+ 0 0 167 2,-0.2 4,-1.2 1,-0.1 3,-0.3 0.949 118.2 43.8 -81.6 -56.4 12.8 -3.6 -5.6 9 9 A K H 4 S+ 0 0 118 1,-0.2 4,-0.3 2,-0.2 74,-0.1 0.815 110.6 60.1 -58.8 -30.8 10.4 -1.7 -7.9 10 10 A F H >> S+ 0 0 5 1,-0.2 4,-1.9 2,-0.2 3,-1.7 0.928 99.8 53.2 -63.6 -46.5 9.0 -0.1 -4.7 11 11 A D H 3X S+ 0 0 90 -4,-0.9 4,-0.9 -3,-0.3 -1,-0.2 0.812 109.3 50.5 -58.7 -30.8 12.4 1.5 -3.9 12 12 A K H 3< S+ 0 0 120 -4,-1.2 -1,-0.3 2,-0.1 -2,-0.2 0.512 107.4 56.3 -85.1 -6.0 12.5 2.9 -7.4 13 13 A D H X> S+ 0 0 9 -3,-1.7 3,-1.2 -4,-0.3 4,-1.1 0.893 103.3 48.2 -90.0 -49.7 8.9 4.4 -6.9 14 14 A L H 3X S+ 0 0 35 -4,-1.9 4,-3.4 1,-0.3 3,-0.5 0.868 102.7 64.5 -59.4 -38.3 9.4 6.5 -3.8 15 15 A K H 3X S+ 0 0 112 -4,-0.9 4,-0.6 1,-0.3 -1,-0.3 0.773 104.2 48.0 -57.0 -26.5 12.5 8.1 -5.3 16 16 A I H <> S+ 0 0 65 -3,-1.2 4,-1.0 -4,-0.2 -1,-0.3 0.768 115.5 42.6 -85.2 -28.6 10.2 9.5 -8.0 17 17 A L H X S+ 0 0 4 -4,-1.1 4,-3.7 -3,-0.5 -2,-0.2 0.800 107.0 60.2 -86.3 -32.5 7.7 10.8 -5.5 18 18 A V H X S+ 0 0 70 -4,-3.4 4,-0.6 3,-0.2 -2,-0.2 0.824 108.3 46.0 -64.5 -31.6 10.2 12.2 -3.0 19 19 A K H < S+ 0 0 187 -4,-0.6 -1,-0.2 -5,-0.3 -2,-0.2 0.878 119.6 38.7 -78.1 -40.2 11.6 14.5 -5.7 20 20 A N H < S- 0 0 116 -4,-1.0 -2,-0.2 1,-0.1 -3,-0.1 0.869 141.1 -52.6 -77.6 -39.0 8.2 15.7 -6.9 21 21 A G H < S+ 0 0 55 -4,-3.7 2,-0.3 -5,-0.1 -3,-0.2 0.008 84.4 122.1 156.9 89.4 6.6 15.8 -3.4 22 22 A F < - 0 0 23 -4,-0.6 2,-0.3 -7,-0.1 -8,-0.0 -0.962 41.8-126.1-154.6 168.1 6.6 13.0 -0.8 23 23 A D - 0 0 111 -2,-0.3 4,-0.4 1,-0.1 -5,-0.0 -0.871 5.9-147.0-122.0 155.3 7.7 12.1 2.7 24 24 A L S >> S+ 0 0 127 -2,-0.3 3,-1.0 2,-0.2 4,-0.9 0.922 102.0 45.7 -83.8 -50.9 9.8 9.3 4.2 25 25 A K H 3> S+ 0 0 165 1,-0.2 4,-1.8 2,-0.2 5,-0.2 0.723 96.4 80.1 -65.0 -21.1 8.0 8.9 7.5 26 26 A L H 3> S+ 0 0 52 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.890 93.3 47.5 -52.9 -43.1 4.7 9.1 5.6 27 27 A L H <> S+ 0 0 13 -3,-1.0 4,-1.5 -4,-0.4 -1,-0.2 0.965 113.0 45.3 -64.2 -54.2 5.1 5.4 4.7 28 28 A Y H < S+ 0 0 156 -4,-0.9 4,-0.3 1,-0.2 -1,-0.2 0.702 117.8 48.3 -63.0 -18.3 6.0 4.2 8.1 29 29 A K H >< S+ 0 0 138 -4,-1.8 3,-0.8 -5,-0.2 4,-0.3 0.821 106.9 52.2 -90.1 -37.0 3.1 6.3 9.4 30 30 A V H >X S+ 0 0 10 -4,-2.7 3,-1.9 1,-0.2 4,-1.7 0.721 88.8 83.7 -71.8 -21.0 0.5 5.2 6.9 31 31 A V H 3X S+ 0 0 26 -4,-1.5 4,-2.1 1,-0.3 5,-0.2 0.866 83.2 59.9 -49.4 -40.5 1.3 1.6 7.8 32 32 A G H <> S+ 0 0 44 -3,-0.8 4,-0.6 -4,-0.3 -1,-0.3 0.799 109.9 42.1 -59.9 -28.6 -1.1 1.9 10.7 33 33 A N H <>>S+ 0 0 56 -3,-1.9 4,-2.7 -4,-0.3 5,-0.6 0.692 109.3 58.5 -90.0 -22.6 -3.9 2.7 8.3 34 34 A L H <5S+ 0 0 5 -4,-1.7 -2,-0.2 2,-0.2 -3,-0.2 0.851 106.2 47.9 -74.5 -35.9 -2.8 -0.0 5.8 35 35 A A H <5S+ 0 0 40 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.811 124.4 31.7 -74.1 -31.3 -3.2 -2.8 8.4 36 36 A T H <5S- 0 0 66 -4,-0.6 -2,-0.2 -5,-0.2 -3,-0.1 0.787 91.2-150.7 -94.4 -34.7 -6.6 -1.5 9.5 37 37 A E T <5 + 0 0 84 -4,-2.7 -3,-0.2 -5,-0.1 -4,-0.1 0.986 42.7 143.0 60.1 62.2 -7.7 -0.2 6.1 38 38 A Q < + 0 0 145 -5,-0.6 -4,-0.1 7,-0.0 -5,-0.1 0.870 68.4 23.1 -96.6 -51.7 -10.0 2.6 7.4 39 39 A P + 0 0 58 0, 0.0 6,-0.2 0, 0.0 7,-0.1 0.960 58.0 147.2 -80.5 -80.9 -9.5 5.5 5.0 40 40 A L S >S- 0 0 3 5,-0.1 5,-2.2 4,-0.1 4,-0.1 0.767 89.1 -69.5 46.7 28.0 -8.3 4.4 1.6 41 41 A A T >5 - 0 0 15 20,-0.2 4,-2.7 3,-0.2 3,-0.4 0.800 44.7-120.6 59.5 117.3 -10.3 7.3 0.3 42 42 A P T 45S+ 0 0 111 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.878 116.1 45.4 -53.0 -41.9 -14.1 6.9 0.5 43 43 A K T 45S+ 0 0 163 1,-0.1 -2,-0.1 2,-0.0 -3,-0.1 0.773 123.3 36.8 -74.1 -26.8 -14.5 7.2 -3.3 44 44 A Y T 45S+ 0 0 98 -3,-0.4 -3,-0.2 -4,-0.1 -4,-0.1 0.939 80.9 179.1 -87.8 -66.4 -11.6 4.8 -3.8 45 45 A K << - 0 0 119 -4,-2.7 -5,-0.1 -5,-2.2 -4,-0.1 0.790 39.0 -93.9 62.0 117.4 -11.8 2.2 -1.1 46 46 A D + 0 0 40 -7,-0.1 13,-0.2 14,-0.1 11,-0.0 -0.104 50.0 176.8 -56.1 157.2 -9.2 -0.6 -1.1 47 47 A H E -B 58 0A 112 11,-1.3 11,-1.2 0, 0.0 -2,-0.0 -0.984 27.4-102.9-162.0 155.2 -10.0 -3.8 -3.0 48 48 A P E -B 57 0A 76 0, 0.0 9,-0.2 0, 0.0 6,-0.1 0.021 17.9-140.9 -70.9-176.5 -8.5 -7.2 -4.0 49 49 A L + 0 0 97 7,-1.0 5,-0.1 4,-0.3 8,-0.1 0.735 29.2 178.8-114.3 -49.0 -7.1 -8.2 -7.4 50 50 A K + 0 0 168 3,-0.6 4,-0.0 6,-0.4 3,-0.0 0.199 33.3 114.5 61.5 169.7 -8.2 -11.8 -7.9 51 51 A G S S- 0 0 73 1,-0.1 -1,-0.1 0, 0.0 3,-0.0 0.852 109.0 -36.4 98.9 47.3 -7.4 -13.7 -11.1 52 52 A G S S+ 0 0 84 1,-0.0 2,-0.6 0, 0.0 3,-0.2 -0.015 132.9 76.4 96.8 -30.1 -5.0 -16.4 -9.9 53 53 A L + 0 0 106 1,-0.1 -3,-0.6 3,-0.1 -4,-0.3 -0.787 44.5 159.4-118.4 87.0 -3.3 -14.2 -7.4 54 54 A K + 0 0 168 -2,-0.6 2,-1.6 1,-0.2 -5,-0.2 0.752 66.5 75.4 -76.4 -25.2 -5.5 -13.8 -4.3 55 55 A D S S+ 0 0 75 -3,-0.2 2,-0.3 15,-0.1 -1,-0.2 -0.323 82.3 87.6 -84.3 54.7 -2.5 -12.7 -2.2 56 56 A F + 0 0 70 -2,-1.6 -7,-1.0 -3,-0.2 -6,-0.4 -0.903 45.4 164.0-157.0 122.9 -2.4 -9.2 -3.8 57 57 A R E -BC 48 69A 72 12,-2.0 12,-2.3 -2,-0.3 2,-0.4 -1.000 15.5-158.7-143.4 139.9 -4.3 -6.0 -2.9 58 58 A E E +BC 47 68A 46 -11,-1.2 -11,-1.3 -2,-0.3 10,-0.3 -0.937 13.3 175.1-121.5 143.1 -3.8 -2.4 -3.8 59 59 A C E - C 0 67A 1 8,-2.1 8,-1.3 -2,-0.4 2,-0.3 -0.672 27.7-125.4-131.3-174.3 -5.0 0.7 -2.0 60 60 A H E + 0 0 28 6,-0.2 6,-0.2 -2,-0.2 -15,-0.2 -0.736 20.0 175.9-143.1 90.5 -4.7 4.5 -2.2 61 61 A L E S+ 0 0 38 -2,-0.3 -20,-0.2 -21,-0.1 -1,-0.1 0.892 76.6 44.8 -59.6 -41.3 -3.5 6.3 0.9 62 62 A K E > S- C 0 65A 107 3,-0.5 3,-1.1 -22,-0.1 0, 0.0 -0.580 94.2-109.9-101.6 166.1 -3.5 9.6 -0.9 63 63 A P T 3 S+ 0 0 79 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.617 120.3 26.6 -69.0 -11.9 -6.2 11.1 -3.3 64 64 A D T 3 S+ 0 0 100 2,-0.1 2,-0.3 1,-0.0 -3,-0.0 -0.224 108.0 83.1-145.6 48.2 -3.7 10.6 -6.2 65 65 A L E < -C 62 0A 11 -3,-1.1 -3,-0.5 20,-0.1 20,-0.2 -0.946 53.4-155.7-156.7 132.2 -1.5 7.7 -5.1 66 66 A L E - D 0 84A 36 18,-3.2 18,-1.2 -2,-0.3 -6,-0.2 -0.411 2.6-161.3 -99.0 177.8 -1.8 3.9 -5.2 67 67 A L E -CD 59 83A 0 -8,-1.3 -8,-2.1 16,-0.2 2,-0.4 -0.607 0.9-166.0-166.4 99.1 -0.1 1.2 -3.1 68 68 A V E +CD 58 82A 23 14,-0.9 13,-2.9 -10,-0.3 14,-1.2 -0.708 23.7 155.1 -90.0 136.4 0.2 -2.5 -4.0 69 69 A Y E -CD 57 80A 2 -12,-2.3 -12,-2.0 -2,-0.4 2,-0.4 -0.957 32.7-137.9-153.0 169.7 1.2 -4.9 -1.3 70 70 A Q E - D 0 79A 45 9,-3.4 9,-1.4 -2,-0.3 2,-0.2 -0.979 16.4-142.9-140.0 123.6 1.1 -8.5 -0.2 71 71 A I E - D 0 78A 43 -2,-0.4 2,-0.3 7,-0.2 7,-0.2 -0.541 6.3-160.9 -84.8 150.3 0.4 -9.8 3.4 72 72 A K E >>> + D 0 77A 34 5,-1.7 3,-2.0 -2,-0.2 5,-0.9 -0.755 12.2 179.4-134.5 87.1 2.2 -12.9 4.8 73 73 A K T 345S+ 0 0 180 -2,-0.3 -1,-0.1 1,-0.3 3,-0.1 0.725 73.3 85.4 -58.0 -21.1 0.4 -14.3 7.8 74 74 A Q T 345S+ 0 0 146 1,-0.3 -1,-0.3 -3,-0.1 -3,-0.0 0.809 119.8 1.0 -50.9 -31.3 3.2 -17.0 7.8 75 75 A E T <45S- 0 0 116 -3,-2.0 -72,-0.3 2,-0.1 -1,-0.3 0.141 104.8-108.9-144.0 17.5 5.2 -14.5 9.9 76 76 A N T <5 + 0 0 79 -4,-0.7 -73,-1.4 1,-0.2 2,-0.3 0.964 66.1 147.8 48.0 71.9 2.8 -11.5 10.2 77 77 A T E < -aD 3 72A 11 -5,-0.9 -5,-1.7 -75,-0.3 2,-0.8 -0.991 47.6-137.1-138.2 145.8 4.5 -9.1 7.9 78 78 A L E -aD 4 71A 1 -75,-2.1 -73,-3.3 -2,-0.3 2,-0.7 -0.823 23.6-172.6-105.2 95.1 3.4 -6.3 5.6 79 79 A F E -aD 5 70A 47 -9,-1.4 -9,-3.4 -2,-0.8 -73,-0.2 -0.790 11.8-149.2 -92.2 115.7 5.4 -6.6 2.3 80 80 A L E + D 0 69A 0 -75,-2.0 -11,-0.3 -2,-0.7 -70,-0.1 -0.241 17.6 179.7 -76.2 168.3 4.8 -3.6 -0.0 81 81 A V E - 0 0 22 -13,-2.9 2,-0.3 1,-0.5 -12,-0.2 0.521 57.6 -0.1-131.9 -68.9 4.9 -3.9 -3.8 82 82 A R E + D 0 68A 88 -14,-1.2 -14,-0.9 -73,-0.1 -1,-0.5 -0.827 53.4 176.4-128.2 167.1 4.2 -0.6 -5.7 83 83 A L E + D 0 67A 0 -2,-0.3 2,-0.3 -16,-0.2 -16,-0.2 -0.861 36.7 54.6-171.9 134.7 3.4 3.0 -4.8 84 84 A G E S- D 0 66A 0 -18,-1.2 -18,-3.2 -2,-0.3 2,-0.3 -0.993 75.2 -56.4 143.3-149.5 2.8 6.2 -6.7 85 85 A S > - 0 0 8 -2,-0.3 4,-3.1 -20,-0.2 5,-0.4 -0.974 28.6-127.2-136.8 150.1 0.7 7.5 -9.5 86 86 A H H > S+ 0 0 142 -2,-0.3 4,-2.0 1,-0.2 -1,-0.1 0.907 115.6 44.1 -60.0 -43.4 0.1 6.6 -13.2 87 87 A S H 4 S+ 0 0 86 2,-0.2 -1,-0.2 1,-0.1 -3,-0.0 0.831 115.3 50.0 -70.8 -33.0 0.9 10.1 -14.3 88 88 A E H 4 S+ 0 0 70 1,-0.2 -2,-0.2 -68,-0.0 -1,-0.1 0.973 115.1 39.7 -69.5 -56.6 3.9 10.3 -12.0 89 89 A L H < 0 0 56 -4,-3.1 -2,-0.2 1,-0.3 -3,-0.2 0.877 360.0 360.0 -60.9 -39.0 5.5 7.0 -13.0 90 90 A F < 0 0 186 -4,-2.0 -1,-0.3 -5,-0.4 0, 0.0 -0.866 360.0 360.0-116.7 360.0 4.6 7.7 -16.7