==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-FEB-07 2OUF . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; . AUTHOR M.GRABOWSKI,M.CHRUSZCZ,T.SKARINA,O.ONOPRIYENKO,J.GUTHRIE,A.S . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6569.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 85.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 61 76.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 13 A N > 0 0 140 0, 0.0 4,-2.5 0, 0.0 3,-0.4 0.000 360.0 360.0 360.0 -53.9 31.5 13.5 4.1 2 14 A P H > + 0 0 60 0, 0.0 4,-2.0 0, 0.0 5,-0.1 0.851 360.0 50.6 -55.2 -35.0 27.8 14.4 3.4 3 15 A L H > S+ 0 0 68 2,-0.2 4,-1.8 1,-0.2 5,-0.1 0.812 108.7 51.4 -72.1 -31.0 27.4 14.8 7.2 4 16 A D H > S+ 0 0 105 -3,-0.4 4,-2.0 2,-0.2 -1,-0.2 0.870 108.3 51.9 -69.2 -41.6 30.4 17.1 7.2 5 17 A K H X S+ 0 0 93 -4,-2.5 4,-2.3 2,-0.2 -2,-0.2 0.899 108.0 52.5 -61.0 -40.9 28.9 19.1 4.4 6 18 A W H X S+ 0 0 70 -4,-2.0 4,-2.6 1,-0.2 5,-0.2 0.937 109.6 47.6 -58.3 -47.1 25.7 19.4 6.4 7 19 A N H X S+ 0 0 79 -4,-1.8 4,-2.4 1,-0.2 -1,-0.2 0.890 110.0 54.9 -61.8 -38.3 27.6 20.7 9.5 8 20 A D H X S+ 0 0 54 -4,-2.0 4,-1.5 2,-0.2 -2,-0.2 0.938 110.6 44.0 -59.3 -49.7 29.4 23.1 7.2 9 21 A I H X S+ 0 0 59 -4,-2.3 4,-2.2 2,-0.2 -2,-0.2 0.912 113.7 49.7 -65.5 -47.6 26.2 24.6 5.9 10 22 A I H < S+ 0 0 11 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.957 117.3 40.2 -55.2 -51.6 24.4 24.8 9.3 11 23 A F H < S+ 0 0 147 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.667 121.6 42.1 -77.9 -14.9 27.4 26.6 10.9 12 24 A H H < S+ 0 0 149 -4,-1.5 -1,-0.2 -5,-0.2 -2,-0.2 0.622 94.5 91.4-107.2 -12.2 28.2 28.8 8.0 13 25 A A S < S- 0 0 26 -4,-2.2 65,-0.0 1,-0.2 64,-0.0 -0.304 96.9 -73.5 -67.8 162.2 24.7 29.9 7.0 14 26 A S > - 0 0 63 1,-0.1 4,-2.1 63,-0.1 5,-0.3 -0.233 43.1-118.4 -54.3 147.6 23.1 33.0 8.5 15 27 A K H > S+ 0 0 81 1,-0.2 4,-1.8 2,-0.2 5,-0.2 0.858 113.2 58.5 -60.3 -36.9 22.2 32.6 12.1 16 28 A K H > S+ 0 0 171 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.907 109.7 41.2 -55.2 -49.3 18.5 33.3 11.2 17 29 A L H > S+ 0 0 44 -3,-0.2 4,-1.6 1,-0.2 -2,-0.2 0.881 114.8 48.5 -74.8 -40.2 18.3 30.4 8.7 18 30 A S H X S+ 0 0 18 -4,-2.1 4,-2.6 2,-0.2 5,-0.2 0.864 111.5 51.0 -68.0 -33.2 20.2 27.8 10.6 19 31 A K H X S+ 0 0 131 -4,-1.8 4,-2.4 -5,-0.3 5,-0.2 0.926 110.1 49.2 -67.6 -45.1 18.1 28.5 13.8 20 32 A K H X S+ 0 0 135 -4,-1.7 4,-1.6 -5,-0.2 -1,-0.2 0.879 113.8 47.3 -60.1 -36.5 14.9 28.2 11.9 21 33 A E H X S+ 0 0 6 -4,-1.6 4,-2.1 2,-0.2 -2,-0.2 0.907 111.5 47.8 -79.5 -42.3 16.0 24.9 10.3 22 34 A L H X S+ 0 0 78 -4,-2.6 4,-2.2 2,-0.2 -1,-0.2 0.869 112.4 50.9 -60.5 -41.5 17.3 23.4 13.6 23 35 A E H X S+ 0 0 108 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.840 108.0 53.9 -61.8 -34.6 13.9 24.4 15.2 24 36 A R H X S+ 0 0 86 -4,-1.6 4,-1.9 -5,-0.2 -2,-0.2 0.931 110.4 45.5 -64.7 -47.3 12.1 22.7 12.3 25 37 A L H X S+ 0 0 37 -4,-2.1 4,-2.5 2,-0.2 -2,-0.2 0.863 111.7 52.4 -63.1 -41.0 14.0 19.5 12.9 26 38 A L H X S+ 0 0 119 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.906 110.4 48.0 -59.0 -44.0 13.4 19.7 16.7 27 39 A E H X S+ 0 0 134 -4,-2.3 4,-2.6 2,-0.2 -2,-0.2 0.897 110.3 51.4 -65.9 -40.3 9.7 20.1 16.2 28 40 A L H X S+ 0 0 79 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.917 110.6 49.1 -62.9 -47.4 9.6 17.2 13.7 29 41 A L H X S+ 0 0 97 -4,-2.5 4,-2.7 2,-0.2 5,-0.2 0.914 112.2 48.3 -53.8 -49.7 11.4 15.0 16.3 30 42 A A H X S+ 0 0 49 -4,-2.5 4,-2.0 1,-0.2 -2,-0.2 0.882 112.2 49.6 -58.6 -43.5 8.9 16.1 19.1 31 43 A L H X S+ 0 0 111 -4,-2.6 4,-1.9 -5,-0.2 -2,-0.2 0.924 113.3 45.8 -61.3 -44.9 6.0 15.4 16.7 32 44 A L H X S+ 0 0 96 -4,-2.4 4,-2.2 2,-0.2 -2,-0.2 0.883 113.3 48.2 -69.8 -41.4 7.3 11.9 15.8 33 45 A E H X S+ 0 0 108 -4,-2.7 4,-1.8 2,-0.2 -1,-0.2 0.909 112.7 49.5 -60.3 -44.5 8.1 10.9 19.4 34 46 A T H X S+ 0 0 91 -4,-2.0 4,-2.9 -5,-0.2 -2,-0.2 0.838 110.4 50.7 -65.7 -35.2 4.7 12.1 20.5 35 47 A F H X S+ 0 0 110 -4,-1.9 4,-1.7 2,-0.2 -1,-0.2 0.937 106.8 53.6 -64.2 -46.5 3.0 10.1 17.8 36 48 A I H <>S+ 0 0 48 -4,-2.2 5,-3.4 1,-0.2 6,-0.2 0.862 115.7 41.1 -58.3 -38.0 5.0 6.9 18.7 37 49 A E H ><5S+ 0 0 113 -4,-1.8 3,-2.2 3,-0.2 -1,-0.2 0.918 110.6 54.7 -74.1 -47.1 3.6 7.4 22.3 38 50 A K H 3<5S+ 0 0 168 -4,-2.9 -2,-0.2 1,-0.3 -1,-0.2 0.762 114.2 44.4 -55.5 -25.1 0.1 8.4 21.3 39 51 A E T 3<5S- 0 0 107 -4,-1.7 -1,-0.3 -5,-0.1 -2,-0.2 0.284 112.5-123.1-103.8 7.1 0.1 5.2 19.3 40 52 A D T < 5 + 0 0 128 -3,-2.2 -3,-0.2 -5,-0.1 3,-0.2 0.814 69.8 131.3 54.0 39.2 1.6 3.1 22.1 41 53 A L >< + 0 0 75 -5,-3.4 4,-1.7 -6,-0.2 -4,-0.2 0.109 20.9 120.2-106.2 24.4 4.6 1.9 20.0 42 54 A E H > S+ 0 0 65 -6,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.828 78.2 37.0 -65.9 -42.4 7.5 2.7 22.3 43 55 A E H > S+ 0 0 126 2,-0.2 4,-3.0 -3,-0.2 5,-0.3 0.877 110.6 60.5 -79.1 -41.3 9.1 -0.8 22.8 44 56 A K H > S+ 0 0 75 1,-0.2 4,-1.8 2,-0.2 -2,-0.2 0.892 110.5 45.7 -42.4 -45.2 8.5 -1.9 19.2 45 57 A F H X S+ 0 0 109 -4,-1.7 4,-2.7 2,-0.2 -2,-0.2 0.919 109.9 50.7 -68.9 -47.6 10.7 1.2 18.4 46 58 A E H X S+ 0 0 133 -4,-1.6 4,-1.9 2,-0.2 -2,-0.2 0.923 113.0 47.1 -56.8 -46.6 13.4 0.4 20.9 47 59 A S H X S+ 0 0 85 -4,-3.0 4,-0.7 2,-0.2 -1,-0.2 0.910 112.5 49.4 -58.0 -48.6 13.7 -3.2 19.6 48 60 A F H >< S+ 0 0 105 -4,-1.8 3,-0.8 -5,-0.3 4,-0.3 0.908 110.9 51.8 -56.4 -43.9 13.8 -2.0 16.0 49 61 A A H >< S+ 0 0 41 -4,-2.7 3,-1.4 1,-0.2 4,-0.3 0.802 97.6 62.7 -70.4 -34.3 16.5 0.6 16.9 50 62 A K H >< S+ 0 0 73 -4,-1.9 3,-1.2 1,-0.2 4,-0.4 0.762 90.3 72.0 -60.4 -26.7 18.9 -1.9 18.6 51 63 A A G XX S+ 0 0 36 -3,-0.8 4,-3.3 -4,-0.7 3,-1.0 0.774 76.9 78.4 -58.6 -28.9 19.2 -3.7 15.3 52 64 A L G <4 S+ 0 0 69 -3,-1.4 -1,-0.2 -4,-0.3 -2,-0.2 0.814 84.9 62.8 -56.2 -35.6 21.3 -0.7 13.9 53 65 A R G <4 S+ 0 0 88 -3,-1.2 -1,-0.3 -4,-0.3 -2,-0.2 0.909 126.0 7.4 -49.2 -49.8 24.3 -2.1 15.8 54 66 A I T <4 S+ 0 0 91 -3,-1.0 2,-0.5 -4,-0.4 -2,-0.2 0.791 99.2 100.4-108.7 -36.3 24.4 -5.4 13.8 55 67 A D X - 0 0 76 -4,-3.3 4,-2.0 1,-0.2 5,-0.2 -0.409 46.4-167.6 -71.2 108.7 21.9 -5.3 10.9 56 68 A E H > S+ 0 0 75 -2,-0.5 4,-2.2 1,-0.2 -1,-0.2 0.930 85.6 50.2 -56.6 -51.2 23.6 -4.5 7.5 57 69 A E H > S+ 0 0 130 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.857 113.3 46.6 -60.8 -38.1 20.4 -3.9 5.5 58 70 A L H > S+ 0 0 24 2,-0.2 4,-2.9 1,-0.2 5,-0.3 0.846 105.8 57.2 -70.9 -41.6 19.1 -1.4 8.1 59 71 A Q H X S+ 0 0 75 -4,-2.0 4,-2.1 1,-0.2 -2,-0.2 0.941 109.2 49.4 -55.0 -45.0 22.3 0.4 8.5 60 72 A Q H X S+ 0 0 130 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.932 111.6 47.0 -56.5 -52.3 22.1 1.1 4.7 61 73 A K H X S+ 0 0 76 -4,-1.9 4,-2.4 1,-0.2 -2,-0.2 0.914 113.0 48.0 -59.3 -45.4 18.4 2.3 4.9 62 74 A I H X S+ 0 0 47 -4,-2.9 4,-2.6 1,-0.2 -1,-0.2 0.891 111.7 51.5 -61.7 -39.9 19.1 4.6 7.9 63 75 A E H X S+ 0 0 81 -4,-2.1 4,-1.8 -5,-0.3 -2,-0.2 0.887 109.7 48.5 -64.3 -43.2 22.2 6.0 6.0 64 76 A S H X S+ 0 0 53 -4,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.907 113.6 48.5 -59.4 -43.4 20.1 6.7 2.9 65 77 A R H X S+ 0 0 163 -4,-2.4 4,-2.3 1,-0.2 -2,-0.2 0.878 107.0 54.5 -69.1 -40.5 17.5 8.4 5.0 66 78 A K H X S+ 0 0 78 -4,-2.6 4,-2.3 2,-0.2 -1,-0.2 0.918 110.0 47.1 -58.1 -43.8 20.0 10.5 6.9 67 79 A T H X S+ 0 0 39 -4,-1.8 4,-2.4 1,-0.2 -2,-0.2 0.889 109.6 53.7 -68.0 -37.3 21.4 11.8 3.6 68 80 A D H X S+ 0 0 84 -4,-2.0 4,-2.0 2,-0.2 -1,-0.2 0.904 110.9 47.0 -59.3 -39.8 17.8 12.5 2.3 69 81 A I H X S+ 0 0 77 -4,-2.3 4,-2.4 2,-0.2 -2,-0.2 0.885 110.5 51.7 -67.5 -42.9 17.2 14.5 5.4 70 82 A V H X S+ 0 0 9 -4,-2.3 4,-2.9 2,-0.2 5,-0.2 0.893 108.6 52.3 -56.8 -44.3 20.5 16.4 5.0 71 83 A I H X S+ 0 0 110 -4,-2.4 4,-2.9 1,-0.2 -2,-0.2 0.951 111.4 45.4 -62.9 -48.8 19.6 17.3 1.5 72 84 A Q H X S+ 0 0 105 -4,-2.0 4,-2.5 2,-0.2 -1,-0.2 0.911 113.3 51.0 -54.9 -46.8 16.2 18.7 2.5 73 85 A S H X S+ 0 0 0 -4,-2.4 4,-1.5 2,-0.2 -2,-0.2 0.951 112.9 44.1 -58.6 -49.9 17.8 20.6 5.3 74 86 A X H X S+ 0 0 44 -4,-2.9 4,-2.4 1,-0.2 3,-0.3 0.917 111.1 54.1 -65.4 -45.1 20.5 22.1 3.1 75 87 A A H X S+ 0 0 48 -4,-2.9 4,-1.6 -5,-0.2 -1,-0.2 0.899 106.0 54.4 -51.5 -45.7 17.9 22.9 0.5 76 88 A N H X S+ 0 0 46 -4,-2.5 4,-0.8 1,-0.2 -1,-0.2 0.823 110.7 45.5 -57.1 -37.3 15.8 24.8 3.2 77 89 A I H < S+ 0 0 14 -4,-1.5 3,-0.2 -3,-0.3 -2,-0.2 0.908 114.8 44.9 -75.5 -43.4 18.8 26.9 4.1 78 90 A L H < S+ 0 0 96 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.687 115.0 51.7 -72.8 -21.0 19.8 27.8 0.5 79 91 A S H < 0 0 94 -4,-1.6 -1,-0.2 -5,-0.3 -2,-0.2 0.699 360.0 360.0 -82.9 -26.3 16.2 28.4 -0.3 80 92 A G < 0 0 47 -4,-0.8 -1,-0.1 -3,-0.2 -2,-0.1 -0.017 360.0 360.0 61.6 360.0 15.7 30.8 2.7