==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 26-MAR-03 1OV9 . COMPND 2 MOLECULE: VICH PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; . AUTHOR R.CERDAN,V.BLOCH,S.T.AROLD . 93 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6073.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 75.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 59 63.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A E > 0 0 186 0, 0.0 3,-0.6 0, 0.0 4,-0.4 0.000 360.0 360.0 360.0 -32.5 32.9 17.9 89.6 2 3 A I T 3> + 0 0 18 1,-0.2 4,-1.8 2,-0.1 5,-0.1 0.584 360.0 70.1 -76.7 -9.0 31.4 14.7 88.4 3 4 A T H 3> S+ 0 0 35 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.732 89.0 52.0 -82.4 -27.3 28.4 17.0 87.9 4 5 A K H <4 S+ 0 0 152 -3,-0.6 7,-0.2 2,-0.2 -1,-0.2 0.651 114.1 47.4 -83.7 -13.4 29.7 19.1 85.0 5 6 A T H >4 S+ 0 0 26 -4,-0.4 3,-1.5 2,-0.1 7,-0.6 0.919 111.9 45.8 -86.9 -54.2 30.4 16.0 83.0 6 7 A L H 3< S+ 0 0 0 -4,-1.8 -2,-0.2 1,-0.3 -3,-0.1 0.809 113.6 50.0 -59.9 -34.4 27.2 14.1 83.6 7 8 A L T 3< S+ 0 0 40 -4,-1.2 2,-0.4 1,-0.1 -1,-0.3 0.315 104.5 62.6 -92.6 9.1 25.0 17.1 82.8 8 9 A N <> - 0 0 70 -3,-1.5 4,-2.6 1,-0.1 3,-0.3 -0.952 67.2-154.2-134.5 113.5 26.7 18.0 79.5 9 10 A I H > S+ 0 0 43 -2,-0.4 4,-3.0 1,-0.2 5,-0.2 0.868 93.4 56.8 -54.6 -38.6 26.6 15.5 76.7 10 11 A R H > S+ 0 0 172 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.926 113.7 38.0 -61.1 -46.1 29.8 16.8 75.1 11 12 A S H > S+ 0 0 46 -3,-0.3 4,-2.9 -7,-0.2 5,-0.3 0.889 116.1 52.4 -72.6 -39.1 31.9 16.3 78.2 12 13 A L H X S+ 0 0 0 -4,-2.6 4,-2.5 -7,-0.6 -2,-0.2 0.926 110.7 48.8 -61.7 -43.1 30.2 13.0 79.0 13 14 A R H X S+ 0 0 93 -4,-3.0 4,-0.8 -5,-0.2 -1,-0.2 0.896 112.1 48.0 -61.3 -46.7 30.9 11.8 75.5 14 15 A A H >< S+ 0 0 64 -4,-2.0 3,-0.9 -5,-0.2 4,-0.3 0.942 114.8 44.8 -62.0 -49.0 34.6 12.8 75.7 15 16 A Y H >< S+ 0 0 31 -4,-2.9 3,-1.9 1,-0.2 -2,-0.2 0.903 104.7 65.5 -61.8 -38.9 35.0 11.1 79.1 16 17 A A H >< S+ 0 0 2 -4,-2.5 3,-2.2 1,-0.3 -1,-0.2 0.725 82.2 77.7 -55.5 -24.5 33.1 8.1 77.7 17 18 A R T << S+ 0 0 150 -3,-0.9 -1,-0.3 -4,-0.8 -2,-0.2 0.794 85.3 62.1 -60.9 -24.8 35.9 7.4 75.3 18 19 A E T < S+ 0 0 122 -3,-1.9 2,-0.3 -4,-0.3 -1,-0.3 0.438 100.4 67.1 -82.3 11.3 37.9 5.9 78.1 19 20 A L S < S- 0 0 7 -3,-2.2 2,-0.2 -4,-0.1 30,-0.0 -0.871 78.8-121.6-130.9 156.3 35.3 3.2 78.6 20 21 A T > - 0 0 59 -2,-0.3 4,-2.7 1,-0.1 5,-0.2 -0.514 33.0-106.7 -92.6 166.2 34.0 0.2 76.6 21 22 A I H > S+ 0 0 16 1,-0.2 4,-1.8 2,-0.2 5,-0.1 0.852 122.6 51.7 -61.2 -34.2 30.5 -0.2 75.5 22 23 A E H > S+ 0 0 139 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.921 110.4 47.5 -68.4 -43.9 30.0 -3.0 78.1 23 24 A Q H > S+ 0 0 57 1,-0.2 4,-2.3 2,-0.2 -2,-0.2 0.907 111.0 52.5 -63.2 -38.6 31.4 -0.7 80.9 24 25 A L H X S+ 0 0 2 -4,-2.7 4,-1.8 1,-0.2 -1,-0.2 0.869 107.6 51.5 -63.5 -35.7 29.1 2.1 79.6 25 26 A E H X S+ 0 0 78 -4,-1.8 4,-1.9 1,-0.2 -1,-0.2 0.845 109.8 50.4 -70.3 -32.4 26.1 -0.3 79.8 26 27 A E H X S+ 0 0 82 -4,-1.8 4,-2.6 2,-0.2 -2,-0.2 0.906 108.7 50.5 -70.6 -41.2 27.2 -1.1 83.4 27 28 A A H X S+ 0 0 0 -4,-2.3 4,-2.8 1,-0.2 5,-0.2 0.872 109.7 52.8 -63.2 -36.2 27.4 2.6 84.4 28 29 A L H X S+ 0 0 27 -4,-1.8 4,-2.8 2,-0.2 -1,-0.2 0.926 108.3 48.7 -66.1 -44.4 23.9 3.0 82.9 29 30 A D H X S+ 0 0 101 -4,-1.9 4,-2.1 2,-0.2 -2,-0.2 0.931 113.5 47.6 -62.4 -43.9 22.5 0.2 85.0 30 31 A K H X S+ 0 0 42 -4,-2.6 4,-2.2 2,-0.2 3,-0.2 0.978 113.3 45.8 -61.4 -54.0 24.0 1.6 88.1 31 32 A L H X S+ 0 0 2 -4,-2.8 4,-2.6 1,-0.3 5,-0.2 0.897 111.5 54.3 -55.3 -40.2 22.8 5.1 87.4 32 33 A T H X S+ 0 0 52 -4,-2.8 4,-2.2 -5,-0.2 -1,-0.3 0.914 107.6 51.4 -60.5 -39.6 19.4 3.6 86.6 33 34 A T H X S+ 0 0 57 -4,-2.1 4,-2.2 -3,-0.2 -2,-0.2 0.951 109.8 47.1 -63.7 -46.6 19.5 1.9 90.0 34 35 A V H X S+ 0 0 2 -4,-2.2 4,-1.6 1,-0.2 -2,-0.2 0.945 112.4 50.1 -59.2 -51.4 20.3 5.1 91.9 35 36 A V H X S+ 0 0 1 -4,-2.6 4,-0.8 1,-0.2 -1,-0.2 0.902 111.9 48.2 -54.9 -44.8 17.6 7.1 90.1 36 37 A Q H X S+ 0 0 105 -4,-2.2 4,-2.1 1,-0.2 3,-0.2 0.834 109.2 51.6 -67.4 -35.0 15.0 4.4 90.8 37 38 A E H X S+ 0 0 68 -4,-2.2 4,-0.8 1,-0.2 -1,-0.2 0.760 109.1 52.8 -72.8 -25.5 15.9 4.1 94.5 38 39 A R H X S+ 0 0 51 -4,-1.6 4,-0.7 -5,-0.2 -1,-0.2 0.645 109.9 47.6 -82.1 -16.8 15.5 7.9 94.7 39 40 A K H X S+ 0 0 69 -4,-0.8 4,-1.4 -3,-0.2 3,-0.3 0.864 109.4 51.2 -87.5 -41.0 12.0 7.7 93.2 40 41 A E H X S+ 0 0 130 -4,-2.1 4,-0.8 1,-0.2 -2,-0.2 0.805 112.5 51.4 -62.2 -29.7 10.8 4.9 95.4 41 42 A A H < S+ 0 0 43 -4,-0.8 -1,-0.2 -5,-0.2 -2,-0.2 0.777 105.3 51.0 -80.4 -30.8 12.1 7.1 98.2 42 43 A E H < S+ 0 0 94 -4,-0.7 3,-0.2 -3,-0.3 -2,-0.2 0.714 108.3 54.6 -80.1 -21.1 10.2 10.3 97.2 43 44 A A H < S+ 0 0 78 -4,-1.4 -2,-0.2 1,-0.2 -1,-0.2 0.778 101.8 52.4 -83.7 -29.5 6.9 8.5 97.0 44 45 A E < 0 0 172 -4,-0.8 -1,-0.2 -5,-0.1 -2,-0.1 0.373 360.0 360.0 -83.5 8.5 6.9 7.0 100.5 45 46 A E 0 0 184 -3,-0.2 -3,-0.0 -5,-0.1 0, 0.0 -0.733 360.0 360.0-118.5 360.0 7.5 10.7 101.2 46 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 47 2 B E > 0 0 149 0, 0.0 4,-0.8 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -50.0 37.8 9.3 88.7 48 3 B I H > + 0 0 32 2,-0.2 4,-3.1 1,-0.2 5,-0.3 0.831 360.0 61.8 -77.0 -29.0 34.3 9.6 87.2 49 4 B T H > S+ 0 0 17 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.866 104.2 46.2 -61.2 -39.8 34.8 5.9 86.2 50 5 B K H 4 S+ 0 0 131 2,-0.2 7,-0.3 1,-0.2 -1,-0.2 0.725 113.9 48.7 -78.0 -20.9 35.1 4.9 89.8 51 6 B T H < S+ 0 0 18 -4,-0.8 7,-0.4 -3,-0.2 3,-0.4 0.896 118.9 38.2 -83.1 -43.6 32.0 7.0 90.7 52 7 B L H < S+ 0 0 2 -4,-3.1 -2,-0.2 1,-0.2 -3,-0.2 0.860 118.2 48.7 -75.6 -35.9 29.9 5.6 87.9 53 8 B L S < S+ 0 0 31 -4,-2.6 2,-0.5 -5,-0.3 -1,-0.2 0.418 103.3 67.2 -86.5 0.4 31.2 2.0 88.1 54 9 B N > - 0 0 80 -3,-0.4 4,-3.0 -4,-0.2 3,-0.4 -0.912 66.5-158.8-127.6 106.8 30.8 1.7 91.8 55 10 B I H > S+ 0 0 50 -2,-0.5 4,-2.0 1,-0.2 -1,-0.1 0.790 92.4 54.6 -49.8 -37.4 27.2 1.8 93.0 56 11 B R H > S+ 0 0 156 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.936 114.5 37.1 -64.8 -50.6 28.2 2.8 96.5 57 12 B S H > S+ 0 0 35 -3,-0.4 4,-2.1 -7,-0.3 -2,-0.2 0.875 116.0 53.5 -71.6 -40.0 30.2 5.9 95.5 58 13 B L H X S+ 0 0 1 -4,-3.0 4,-2.3 -7,-0.4 -1,-0.2 0.909 107.0 53.9 -60.4 -42.4 27.8 6.8 92.7 59 14 B R H X S+ 0 0 89 -4,-2.0 4,-0.9 -5,-0.3 -1,-0.2 0.843 106.7 50.5 -61.8 -36.3 25.0 6.7 95.3 60 15 B A H >< S+ 0 0 43 -4,-1.2 3,-1.2 2,-0.2 4,-0.3 0.966 111.0 48.1 -67.4 -51.5 26.7 9.1 97.6 61 16 B Y H >< S+ 0 0 21 -4,-2.1 3,-2.3 1,-0.3 4,-0.3 0.900 104.3 60.9 -53.4 -45.4 27.3 11.6 94.8 62 17 B A H >< S+ 0 0 2 -4,-2.3 3,-2.0 1,-0.3 -1,-0.3 0.776 88.2 72.6 -55.9 -28.8 23.7 11.4 93.7 63 18 B R T << S+ 0 0 189 -3,-1.2 -1,-0.3 -4,-0.9 -2,-0.2 0.704 93.0 56.7 -61.6 -17.8 22.6 12.6 97.1 64 19 B E T < S+ 0 0 148 -3,-2.3 -1,-0.3 -4,-0.3 2,-0.2 0.581 100.2 75.5 -86.4 -13.5 23.8 16.0 96.0 65 20 B L S < S- 0 0 9 -3,-2.0 2,-0.2 -4,-0.3 3,-0.0 -0.610 80.8-118.4-101.2 162.0 21.6 16.0 93.0 66 21 B T > - 0 0 70 -2,-0.2 4,-2.9 1,-0.1 5,-0.1 -0.557 32.1-112.3 -88.8 157.1 17.9 16.6 92.5 67 22 B I H > S+ 0 0 34 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.899 121.9 51.4 -58.6 -37.1 15.8 13.7 91.1 68 23 B E H > S+ 0 0 120 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.891 110.2 46.7 -66.3 -40.7 15.3 15.9 88.0 69 24 B Q H > S+ 0 0 65 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.889 113.6 51.6 -67.0 -37.0 19.0 16.6 87.7 70 25 B L H X S+ 0 0 1 -4,-2.9 4,-2.3 2,-0.2 -2,-0.2 0.881 110.2 46.1 -65.7 -41.9 19.4 12.8 88.2 71 26 B E H X S+ 0 0 70 -4,-2.8 4,-2.3 2,-0.2 -1,-0.2 0.846 111.1 53.8 -69.0 -35.7 16.9 12.0 85.4 72 27 B E H X S+ 0 0 67 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.905 110.0 47.4 -62.4 -44.1 18.6 14.5 83.2 73 28 B A H X S+ 0 0 0 -4,-2.1 4,-2.5 2,-0.2 5,-0.2 0.922 110.6 51.8 -63.8 -43.7 21.9 12.8 83.8 74 29 B L H X S+ 0 0 24 -4,-2.3 4,-1.9 1,-0.2 -2,-0.2 0.901 110.1 49.1 -63.0 -38.3 20.4 9.4 83.1 75 30 B D H X S+ 0 0 103 -4,-2.3 4,-2.2 2,-0.2 -1,-0.2 0.920 110.8 49.4 -68.0 -40.2 19.0 10.6 79.8 76 31 B K H X S+ 0 0 59 -4,-2.2 4,-1.9 1,-0.2 -2,-0.2 0.946 112.2 47.1 -63.6 -48.7 22.3 12.1 78.7 77 32 B L H X S+ 0 0 2 -4,-2.5 4,-2.2 1,-0.2 -1,-0.2 0.845 109.9 54.7 -60.3 -35.4 24.2 8.9 79.5 78 33 B T H X S+ 0 0 53 -4,-1.9 4,-1.8 -5,-0.2 -1,-0.2 0.932 108.6 48.5 -62.1 -46.8 21.5 6.9 77.7 79 34 B T H X S+ 0 0 65 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.837 110.7 50.5 -64.2 -35.1 22.1 9.0 74.6 80 35 B V H X S+ 0 0 0 -4,-1.9 4,-2.6 2,-0.2 -1,-0.2 0.904 109.7 49.9 -67.9 -41.6 25.8 8.6 74.8 81 36 B V H X S+ 0 0 3 -4,-2.2 4,-1.7 1,-0.2 -2,-0.2 0.853 113.8 47.6 -64.7 -33.1 25.5 4.8 75.1 82 37 B Q H X S+ 0 0 101 -4,-1.8 4,-2.3 2,-0.2 -2,-0.2 0.904 110.3 49.6 -74.3 -43.5 23.2 4.9 72.1 83 38 B E H X S+ 0 0 75 -4,-2.5 4,-0.8 1,-0.2 -2,-0.2 0.886 112.1 50.7 -63.4 -40.4 25.5 7.2 70.0 84 39 B R H X S+ 0 0 43 -4,-2.6 4,-0.7 2,-0.2 -1,-0.2 0.911 110.3 46.5 -63.3 -45.1 28.4 4.8 70.8 85 40 B K H >X S+ 0 0 79 -4,-1.7 3,-1.4 1,-0.2 4,-0.7 0.966 115.3 47.5 -59.5 -51.4 26.5 1.6 69.8 86 41 B E H 3< S+ 0 0 134 -4,-2.3 4,-0.4 1,-0.3 -1,-0.2 0.667 106.3 59.3 -64.1 -16.7 25.4 3.3 66.6 87 42 B A H 3< S+ 0 0 52 -4,-0.8 -1,-0.3 -5,-0.2 -2,-0.2 0.686 104.6 51.6 -85.2 -15.3 28.9 4.5 66.0 88 43 B E H << S+ 0 0 77 -3,-1.4 4,-0.2 -4,-0.7 -2,-0.2 0.593 95.7 64.4 -97.2 -13.1 30.1 0.9 66.0 89 44 B A S X S+ 0 0 41 -4,-0.7 4,-2.7 1,-0.2 5,-0.2 0.711 103.7 51.3 -80.9 -22.5 27.6 -0.5 63.4 90 45 B E T 4 S+ 0 0 116 -4,-0.4 -1,-0.2 2,-0.2 -2,-0.2 0.478 103.0 54.6 -92.0 -9.2 29.3 1.7 60.8 91 46 B E T 4 S+ 0 0 128 3,-0.2 -1,-0.2 -3,-0.2 -2,-0.2 0.514 117.8 43.6 -94.3 -10.4 32.8 0.6 61.6 92 47 B I T 4 S+ 0 0 121 -4,-0.2 -2,-0.2 2,-0.2 -3,-0.1 0.895 115.2 38.9 -94.6 -67.1 31.3 -2.8 60.9 93 48 B A < 0 0 87 -4,-2.7 -3,-0.2 1,-0.2 -2,-0.1 0.724 360.0 360.0 -60.6 -20.7 29.1 -2.5 57.8 94 49 B A 0 0 112 -5,-0.2 -1,-0.2 -4,-0.1 -2,-0.2 0.768 360.0 360.0-100.7 360.0 31.8 -0.2 56.4