==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 30-MAR-03 1OWT . COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.J.BARNHAM,W.J.MCKINSTRY,G.MULTHAUP,D.GALATIS,C.J.MORTON, . 66 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4624.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 72.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 24.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 124 A S 0 0 156 0, 0.0 2,-1.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 30.0 12.7 14.2 4.3 2 125 A D + 0 0 162 2,-0.0 2,-1.3 1,-0.0 3,-0.0 -0.495 360.0 168.6 -84.1 67.0 9.7 13.8 2.0 3 126 A A + 0 0 65 -2,-1.9 -1,-0.0 1,-0.2 0, 0.0 -0.683 9.5 160.2 -86.7 92.2 10.4 10.2 0.9 4 127 A L + 0 0 106 -2,-1.3 10,-0.5 2,-0.1 2,-0.2 0.215 65.7 43.1 -94.9 12.8 7.2 9.2 -0.8 5 128 A L S S- 0 0 93 1,-0.1 8,-0.1 8,-0.1 -2,-0.0 -0.577 113.5 -17.8-136.3-162.1 9.1 6.4 -2.6 6 129 A V + 0 0 72 6,-0.4 5,-0.2 -2,-0.2 -1,-0.1 -0.252 62.0 176.4 -50.6 115.9 11.7 3.6 -1.8 7 130 A P - 0 0 71 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.872 55.9 -19.1 -86.6 -94.1 13.4 4.6 1.4 8 131 A D S S- 0 0 118 3,-0.0 -2,-0.0 0, 0.0 0, 0.0 0.821 118.3 -36.8 -85.1-101.6 16.0 2.2 2.9 9 132 A K S S+ 0 0 141 2,-0.1 2,-0.3 55,-0.0 -3,-0.1 0.443 115.3 88.9-108.1 -4.9 16.0 -1.4 1.7 10 133 A a S S- 0 0 17 54,-0.2 2,-0.7 30,-0.0 54,-0.3 -0.659 79.3-119.6 -94.7 152.3 12.2 -1.7 1.5 11 134 A K E -A 63 0A 91 52,-3.4 52,-2.8 -2,-0.3 2,-0.5 -0.817 24.8-152.1 -94.8 117.1 10.2 -0.9 -1.6 12 135 A F E -A 62 0A 27 -2,-0.7 2,-0.6 50,-0.3 -6,-0.4 -0.785 12.2-173.1 -93.2 125.4 7.7 1.9 -1.0 13 136 A L E +A 61 0A 19 48,-3.2 48,-1.2 -2,-0.5 2,-1.0 -0.708 15.0 167.0-116.8 74.8 4.6 1.8 -3.2 14 137 A H E +A 60 0A 24 -2,-0.6 2,-0.4 -10,-0.5 46,-0.3 -0.774 17.7 143.4 -93.8 94.5 2.9 5.0 -2.2 15 138 A Q E -A 59 0A 113 44,-2.9 44,-2.4 -2,-1.0 2,-0.6 -0.998 43.9-135.4-138.9 139.0 0.2 5.6 -4.8 16 139 A E E -A 58 0A 91 -2,-0.4 2,-0.7 42,-0.2 42,-0.3 -0.812 14.2-170.0 -95.0 121.7 -3.3 7.0 -4.7 17 140 A R > + 0 0 147 40,-2.3 2,-1.0 -2,-0.6 3,-0.7 -0.750 7.4 178.2-111.8 82.3 -5.9 5.1 -6.6 18 141 A M T 3 S+ 0 0 122 -2,-0.7 -1,-0.1 1,-0.2 40,-0.1 0.001 72.9 70.9 -74.6 34.7 -9.0 7.3 -6.6 19 142 A D T 3 S+ 0 0 121 -2,-1.0 -1,-0.2 38,-0.3 2,-0.2 0.727 91.0 49.4-113.4 -50.6 -10.7 4.6 -8.7 20 143 A V < - 0 0 68 -3,-0.7 2,-0.3 37,-0.2 -1,-0.1 -0.556 61.8-161.3 -94.5 159.0 -11.3 1.7 -6.3 21 144 A b + 0 0 40 -2,-0.2 2,-0.2 -3,-0.1 36,-0.2 -0.783 28.4 138.9-145.8 97.5 -12.9 2.0 -2.8 22 145 A E E -C 56 0B 63 34,-1.0 34,-2.6 -2,-0.3 29,-0.2 -0.782 51.2 -77.5-132.7 176.4 -12.4 -0.8 -0.3 23 146 A T E >> -C 55 0B 45 32,-0.3 4,-1.7 -2,-0.2 3,-0.7 -0.248 47.9-102.1 -71.5 162.0 -11.7 -1.4 3.4 24 147 A H H 3> S+ 0 0 76 30,-0.9 4,-1.4 1,-0.3 -1,-0.1 0.797 124.2 56.3 -53.7 -31.1 -8.3 -1.0 5.0 25 148 A L H 3> S+ 0 0 129 2,-0.2 4,-2.3 3,-0.2 -1,-0.3 0.874 102.9 53.2 -71.0 -39.0 -8.0 -4.8 4.9 26 149 A H H <> S+ 0 0 95 -3,-0.7 4,-3.3 2,-0.2 5,-0.3 0.967 111.7 43.2 -62.5 -53.6 -8.6 -5.0 1.1 27 150 A W H X S+ 0 0 14 -4,-1.7 4,-3.1 1,-0.2 5,-0.3 0.857 111.6 57.4 -60.5 -33.4 -5.8 -2.6 0.2 28 151 A H H X S+ 0 0 53 -4,-1.4 4,-2.7 -5,-0.3 -1,-0.2 0.926 112.4 40.2 -61.3 -44.9 -3.7 -4.3 2.7 29 152 A T H X S+ 0 0 48 -4,-2.3 4,-4.0 2,-0.2 5,-0.2 0.951 116.3 48.4 -69.7 -49.9 -4.2 -7.6 0.9 30 153 A V H X S+ 0 0 59 -4,-3.3 4,-2.6 1,-0.2 -2,-0.2 0.919 116.4 45.5 -56.1 -44.4 -3.9 -6.1 -2.6 31 154 A A H X S+ 0 0 1 -4,-3.1 4,-1.7 -5,-0.3 -1,-0.2 0.948 116.7 43.4 -62.7 -51.3 -0.7 -4.3 -1.5 32 155 A K H X S+ 0 0 86 -4,-2.7 4,-3.9 -5,-0.3 5,-0.3 0.901 113.4 52.9 -62.2 -42.6 0.7 -7.4 0.2 33 156 A E H X S+ 0 0 105 -4,-4.0 4,-2.9 1,-0.2 5,-0.3 0.948 106.4 51.8 -58.3 -52.1 -0.3 -9.6 -2.7 34 157 A T H < S+ 0 0 73 -4,-2.6 4,-0.4 -5,-0.2 -1,-0.2 0.870 119.6 36.6 -53.2 -40.9 1.4 -7.3 -5.3 35 158 A c H ><>S+ 0 0 4 -4,-1.7 5,-1.4 -5,-0.2 3,-1.0 0.930 118.5 47.7 -79.2 -47.8 4.6 -7.5 -3.2 36 159 A S H 3<5S+ 0 0 50 -4,-3.9 -2,-0.2 1,-0.3 -3,-0.2 0.763 101.7 65.6 -65.0 -26.0 4.3 -11.1 -2.0 37 160 A E T 3<5S+ 0 0 179 -4,-2.9 -1,-0.3 -5,-0.3 -2,-0.2 0.817 114.2 34.8 -65.4 -26.9 3.5 -12.2 -5.6 38 161 A K T < 5S- 0 0 133 -3,-1.0 -3,-0.1 -4,-0.4 -4,-0.0 0.271 123.4 -68.9 -96.1-137.5 7.1 -11.1 -6.3 39 162 A S T 5S+ 0 0 53 27,-0.1 27,-2.6 2,-0.0 2,-0.3 -0.360 98.3 88.0-120.0 51.7 10.0 -11.4 -3.9 40 163 A T E < -B 65 0A 14 -5,-1.4 2,-0.4 25,-0.3 -2,-0.2 -0.977 57.8-142.3-146.0 159.4 9.0 -8.9 -1.2 41 164 A N E -B 64 0A 63 23,-2.0 23,-1.6 -2,-0.3 2,-0.3 -0.981 25.5-116.5-127.0 135.1 7.0 -8.7 2.0 42 165 A L E +B 63 0A 27 -2,-0.4 21,-0.3 21,-0.3 3,-0.1 -0.542 42.6 155.0 -72.7 126.0 4.8 -5.8 3.2 43 166 A H E S+ 0 0 132 19,-2.5 2,-0.6 -2,-0.3 -1,-0.2 0.720 70.1 32.0-115.1 -49.6 6.0 -4.3 6.4 44 167 A D E S+B 62 0A 74 18,-1.4 18,-1.4 2,-0.0 2,-0.3 -0.814 72.9 175.8-118.7 91.8 4.7 -0.7 6.4 45 168 A Y - 0 0 112 -2,-0.6 2,-0.3 16,-0.3 16,-0.3 -0.667 3.4-177.2 -93.6 150.0 1.3 -0.4 4.7 46 169 A G - 0 0 5 -2,-0.3 14,-3.3 -19,-0.1 2,-0.5 -0.995 14.9-152.8-146.5 148.1 -0.7 2.7 4.5 47 170 A M + 0 0 17 -2,-0.3 12,-0.3 12,-0.3 2,-0.1 -0.979 22.1 168.1-127.6 121.6 -4.1 3.7 3.1 48 171 A L + 0 0 38 -2,-0.5 10,-2.8 -33,-0.2 9,-2.1 -0.318 45.9 58.1-113.4-162.8 -4.9 7.2 1.9 49 172 A L S S- 0 0 41 8,-0.3 8,-0.2 7,-0.2 -1,-0.2 0.898 78.7-136.7 39.4 66.6 -7.7 9.0 -0.0 50 173 A P + 0 0 81 0, 0.0 6,-0.3 0, 0.0 -1,-0.1 -0.154 29.3 177.4 -50.9 138.0 -10.6 8.0 2.3 51 174 A b - 0 0 55 4,-2.8 5,-0.2 -29,-0.2 2,-0.2 0.695 63.5 -9.3-113.1 -36.7 -13.7 6.9 0.4 52 175 A G S S- 0 0 40 3,-2.1 -1,-0.1 -30,-0.2 -30,-0.0 -0.586 91.7 -68.4-140.8-156.8 -16.0 6.0 3.2 53 176 A I S S+ 0 0 175 -2,-0.2 3,-0.0 1,-0.1 -30,-0.0 0.816 135.9 6.4 -73.2 -31.1 -16.1 5.4 6.9 54 177 A D S S+ 0 0 71 2,-0.0 -30,-0.9 -31,-0.0 2,-0.3 0.380 117.1 92.1-126.9 -8.1 -13.9 2.3 6.5 55 178 A K E +C 23 0B 50 -32,-0.2 -4,-2.8 -31,-0.1 -3,-2.1 -0.676 47.5 176.2 -96.9 150.5 -13.1 2.5 2.7 56 179 A F E -C 22 0B 40 -34,-2.6 -34,-1.0 -6,-0.3 -7,-0.2 -0.730 28.1-152.4-135.7-175.4 -10.1 4.2 1.1 57 180 A R S S+ 0 0 73 -9,-2.1 -40,-2.3 -2,-0.2 -38,-0.3 0.390 71.3 74.9-139.4 -13.2 -8.6 4.8 -2.3 58 181 A G E -A 16 0A 0 -10,-2.8 2,-0.3 -42,-0.3 -42,-0.2 -0.769 52.7-168.0-110.3 156.1 -4.9 5.2 -1.6 59 182 A V E +A 15 0A 20 -44,-2.4 -44,-2.9 -2,-0.3 2,-0.4 -0.985 10.0 177.1-144.5 129.6 -2.2 2.7 -0.6 60 183 A E E +A 14 0A 53 -14,-3.3 2,-0.4 -2,-0.3 -46,-0.3 -0.809 19.9 164.7-132.7 88.4 1.4 3.3 0.7 61 184 A F E -A 13 0A 15 -48,-1.2 -48,-3.2 -2,-0.4 2,-0.6 -0.890 26.5-154.0-113.8 141.6 3.2 0.0 1.4 62 185 A V E +AB 12 44A 10 -18,-1.4 -19,-2.5 -2,-0.4 -18,-1.4 -0.921 19.1 179.4-113.0 107.6 6.8 -0.7 2.0 63 186 A c E -AB 11 42A 0 -52,-2.8 -52,-3.4 -2,-0.6 -21,-0.3 -0.931 14.9-146.7-113.4 130.2 7.8 -4.2 1.2 64 187 A a E - B 0 41A 33 -23,-1.6 -23,-2.0 -2,-0.5 2,-0.2 -0.616 31.5 -92.2 -93.5 153.4 11.4 -5.5 1.5 65 188 A P E B 0 40A 89 0, 0.0 -25,-0.3 0, 0.0 -1,-0.1 -0.451 360.0 360.0 -67.1 128.7 13.0 -8.2 -0.8 66 189 A L 0 0 166 -27,-2.6 -26,-0.2 -2,-0.2 -27,-0.1 0.557 360.0 360.0-132.3 360.0 12.7 -11.7 0.5