==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-FEB-07 2OYZ . COMPND 2 MOLECULE: UPF0345 PROTEIN VPA0057; . SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; . AUTHOR C.CHANG,L.VOLKART,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5826.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 68.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 52 55.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 3 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 148 0, 0.0 2,-0.2 0, 0.0 17,-0.0 0.000 360.0 360.0 360.0 38.0 15.4 2.4 1.6 2 2 A S - 0 0 97 0, 0.0 2,-0.6 0, 0.0 17,-0.3 -0.676 360.0-110.4-117.4 171.1 12.2 0.4 1.0 3 3 A I - 0 0 114 -2,-0.2 2,-0.4 15,-0.1 15,-0.2 -0.910 30.7-149.0-108.7 111.8 8.4 1.2 1.1 4 4 A K E -A 17 0A 132 13,-2.2 13,-2.9 -2,-0.6 2,-0.4 -0.669 7.5-151.6 -89.4 125.9 6.6 -0.4 4.0 5 5 A E E +A 16 0A 159 -2,-0.4 2,-0.4 11,-0.2 11,-0.2 -0.827 17.9 174.1 -98.9 132.9 3.0 -1.4 3.5 6 6 A N E -A 15 0A 50 9,-2.1 9,-2.4 -2,-0.4 2,-0.4 -0.996 13.8-163.8-137.1 146.1 0.5 -1.5 6.4 7 7 A S E +A 14 0A 71 -2,-0.4 2,-0.3 7,-0.2 7,-0.2 -0.975 13.4 179.3-124.7 142.1 -3.2 -2.1 6.7 8 8 A Y E >>> +A 13 0A 97 5,-3.1 5,-2.0 -2,-0.4 3,-1.1 -0.921 55.3 23.8-136.4 159.8 -5.4 -1.3 9.7 9 9 A F G >45S- 0 0 107 -2,-0.3 3,-1.4 1,-0.3 -1,-0.2 0.884 130.2 -53.8 53.3 49.3 -9.0 -1.5 10.7 10 10 A A G 345S- 0 0 116 1,-0.3 -1,-0.3 -3,-0.1 -3,-0.0 0.737 113.6 -43.0 60.4 27.9 -9.9 -4.3 8.3 11 11 A G G <45S+ 0 0 21 -3,-1.1 -1,-0.3 2,-0.3 -2,-0.2 0.456 110.7 120.1 96.6 3.7 -8.6 -2.3 5.4 12 12 A G T <<5S+ 0 0 10 -3,-1.4 19,-2.9 -4,-0.7 2,-0.4 0.746 81.1 28.8 -67.5 -28.8 -10.2 1.0 6.5 13 13 A V E S- B 0 23A 102 3,-2.6 3,-1.9 -2,-0.4 -2,-0.0 -0.935 74.8 -19.6-136.7 116.5 13.3 10.7 3.5 21 21 A H T 3 S- 0 0 170 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.964 129.3 -51.5 48.2 52.4 16.5 12.4 4.4 22 22 A G T 3 S+ 0 0 68 1,-0.2 2,-0.3 -3,-0.0 -1,-0.3 0.214 117.1 115.5 78.9 -13.8 16.8 10.1 7.3 23 23 A Q E < -B 20 0A 139 -3,-1.9 -3,-2.6 1,-0.0 2,-0.4 -0.704 66.0-124.0 -99.0 137.0 13.3 10.9 8.6 24 24 A D E +B 19 0A 95 -2,-0.3 69,-0.6 -5,-0.2 2,-0.3 -0.638 37.9 167.3 -81.2 131.5 10.4 8.4 8.8 25 25 A V E -BC 18 92A 13 -7,-2.7 -7,-2.7 -2,-0.4 2,-0.3 -0.917 15.3-164.1-135.4 154.0 7.3 9.5 6.9 26 26 A S E -BC 17 91A 19 65,-2.1 65,-2.9 -2,-0.3 2,-0.4 -0.996 5.1-163.9-141.2 145.3 4.1 7.8 5.8 27 27 A V E +BC 16 90A 51 -11,-2.1 -11,-2.9 -2,-0.3 2,-0.3 -0.939 26.8 152.5-116.3 149.9 1.4 8.6 3.4 28 28 A G E -BC 15 89A 9 61,-2.2 61,-2.3 -2,-0.4 2,-0.4 -0.945 36.7-114.3-162.4-177.8 -2.0 6.8 3.5 29 29 A V E -BC 14 88A 69 -15,-2.4 -15,-2.1 -2,-0.3 2,-0.4 -0.972 16.9-162.5-131.5 140.2 -5.7 6.7 2.9 30 30 A X E -BC 13 87A 4 57,-2.2 57,-2.4 -2,-0.4 -17,-0.2 -0.998 12.4-144.8-125.4 130.1 -8.6 6.5 5.3 31 31 A L - 0 0 85 -19,-2.9 52,-0.2 -2,-0.4 54,-0.1 -0.493 46.4 -69.1 -84.0 159.1 -12.1 5.4 4.3 32 32 A P S S+ 0 0 73 0, 0.0 2,-0.3 0, 0.0 52,-0.2 -0.190 91.8 83.2 -50.2 134.3 -15.2 6.9 5.9 33 33 A G E S-F 83 0B 35 50,-1.7 50,-2.9 -3,-0.1 2,-0.4 -0.971 78.2 -79.1 161.1-168.4 -15.5 5.9 9.6 34 34 A E E +F 82 0B 109 -2,-0.3 2,-0.3 48,-0.2 48,-0.2 -0.999 45.3 178.9-131.1 135.9 -14.3 6.8 13.1 35 35 A Y E -F 81 0B 22 46,-2.6 46,-2.7 -2,-0.4 2,-0.4 -0.965 20.9-145.2-139.8 148.0 -10.9 5.7 14.3 36 36 A T E -F 80 0B 80 -2,-0.3 2,-0.4 44,-0.2 44,-0.2 -0.968 18.8-174.4-117.3 132.6 -8.7 6.1 17.4 37 37 A F E -F 79 0B 41 42,-2.9 42,-2.5 -2,-0.4 2,-0.3 -0.969 13.8-142.0-124.3 142.0 -4.9 6.4 17.2 38 38 A G E -F 78 0B 47 -2,-0.4 2,-0.4 40,-0.2 40,-0.3 -0.792 12.6-147.8-102.6 147.9 -2.4 6.4 19.9 39 39 A T E +F 77 0B 8 38,-3.7 38,-1.1 -2,-0.3 35,-0.0 -0.903 25.3 165.3-114.2 145.0 0.8 8.6 19.9 40 40 A Q S S+ 0 0 162 1,-0.5 36,-1.7 -2,-0.4 -1,-0.2 0.581 79.3 27.0-110.0 -81.1 4.1 7.9 21.4 41 41 A A S S- 0 0 51 34,-0.2 -1,-0.5 1,-0.1 36,-0.1 -0.419 109.3 -87.2 -70.6 156.0 6.5 10.5 19.8 42 42 A P - 0 0 73 0, 0.0 2,-0.3 0, 0.0 32,-0.2 -0.277 49.9-152.9 -61.5 157.5 4.7 13.7 18.8 43 43 A E E -D 73 0A 23 30,-2.0 30,-2.6 -3,-0.1 2,-0.5 -0.964 13.7-150.0-130.3 149.7 3.2 13.5 15.2 44 44 A R E -DE 72 92A 94 48,-2.5 48,-2.4 -2,-0.3 2,-0.4 -0.988 18.2-164.9-119.2 118.9 2.4 16.0 12.5 45 45 A X E -DE 71 91A 4 26,-2.7 26,-2.4 -2,-0.5 2,-0.4 -0.828 2.4-166.7-102.8 135.3 -0.5 15.0 10.4 46 46 A T E -DE 70 90A 23 44,-3.3 44,-2.7 -2,-0.4 2,-0.6 -0.992 20.0-133.1-121.6 133.1 -1.1 16.7 7.1 47 47 A V E - E 0 89A 0 22,-2.9 21,-3.1 -2,-0.4 42,-0.3 -0.731 23.7-177.9 -81.4 118.0 -4.4 16.3 5.1 48 48 A V E S- 0 0 78 40,-2.1 2,-0.3 -2,-0.6 41,-0.2 0.926 70.9 -10.3 -82.7 -48.7 -3.3 15.7 1.5 49 49 A K E S+ E 0 88A 155 39,-1.5 39,-2.4 18,-0.1 2,-0.4 -0.882 121.6 18.0-154.5 118.9 -6.7 15.5 -0.2 50 50 A G S S- 0 0 27 -2,-0.3 17,-1.2 37,-0.2 2,-0.3 -0.974 87.4 -76.6 126.3-140.6 -10.0 15.3 1.7 51 51 A A E -G 66 0B 28 34,-0.4 33,-0.4 -2,-0.4 2,-0.4 -0.955 24.4-155.6-160.5 143.3 -10.6 16.3 5.4 52 52 A L E -G 65 0B 0 13,-2.4 13,-2.8 -2,-0.3 2,-0.6 -0.990 11.9-148.2-121.2 137.5 -10.0 14.8 8.8 53 53 A V E -GH 64 82B 7 29,-2.6 29,-2.7 -2,-0.4 2,-0.4 -0.900 26.9-163.4-107.0 119.5 -12.2 15.7 11.8 54 54 A V E +GH 63 81B 1 9,-3.1 9,-2.2 -2,-0.6 2,-0.4 -0.854 26.3 177.3-117.4 137.6 -10.0 15.5 14.9 55 55 A K E - H 0 80B 44 25,-2.1 25,-2.9 -2,-0.4 2,-0.2 -0.951 18.7-156.5-132.5 114.4 -10.5 15.4 18.6 56 56 A R E > - H 0 79B 50 -2,-0.4 3,-2.1 5,-0.3 23,-0.2 -0.564 43.8 -73.9 -82.2 155.8 -7.4 15.1 20.7 57 57 A V T 3 S+ 0 0 81 21,-1.9 -1,-0.1 1,-0.3 3,-0.1 -0.168 120.7 13.6 -53.6 135.0 -7.7 13.5 24.2 58 58 A G T 3 S+ 0 0 88 1,-0.3 -1,-0.3 -3,-0.1 2,-0.1 0.088 94.3 130.8 85.7 -24.5 -9.3 15.9 26.7 59 59 A E < - 0 0 68 -3,-2.1 -1,-0.3 1,-0.1 -4,-0.0 -0.344 49.6-153.0 -61.2 138.5 -10.5 18.3 23.9 60 60 A A S S+ 0 0 80 -3,-0.1 2,-0.2 -2,-0.1 -1,-0.1 0.828 72.3 49.3 -80.3 -33.0 -14.2 19.2 24.1 61 61 A D S S- 0 0 117 -5,-0.0 2,-0.3 -7,-0.0 -5,-0.3 -0.671 73.2-124.8-114.6 158.6 -14.6 19.8 20.4 62 62 A W - 0 0 83 -2,-0.2 2,-0.4 -7,-0.1 -7,-0.2 -0.780 25.8-156.6 -93.1 145.7 -14.0 18.2 17.0 63 63 A T E -G 54 0B 59 -9,-2.2 -9,-3.1 -2,-0.3 2,-0.5 -0.996 7.7-140.3-128.5 127.8 -11.9 20.3 14.5 64 64 A T E -G 53 0B 73 -2,-0.4 2,-0.5 -11,-0.3 -11,-0.2 -0.776 15.2-169.4 -89.3 125.5 -12.1 19.8 10.7 65 65 A Y E -G 52 0B 41 -13,-2.8 -13,-2.4 -2,-0.5 2,-0.2 -0.967 11.0-163.9-112.3 129.8 -8.8 20.0 8.8 66 66 A S E > -G 51 0B 56 -2,-0.5 3,-2.5 -15,-0.2 -19,-0.3 -0.469 41.0 -41.8-109.3 178.6 -9.1 20.1 5.0 67 67 A S T 3 S+ 0 0 67 -17,-1.2 -19,-0.2 1,-0.3 -1,-0.2 -0.094 127.4 14.1 -48.0 128.9 -6.6 19.6 2.1 68 68 A G T 3 S+ 0 0 62 -21,-3.1 -1,-0.3 1,-0.3 2,-0.2 0.159 99.7 118.0 91.3 -13.2 -3.3 21.3 2.8 69 69 A E < - 0 0 95 -3,-2.5 -22,-2.9 -22,-0.1 2,-0.3 -0.569 45.3-160.7 -88.5 149.9 -3.9 21.8 6.5 70 70 A S E -D 46 0A 55 -24,-0.2 2,-0.3 -2,-0.2 -24,-0.2 -0.915 7.8-170.5-126.3 155.8 -1.8 20.2 9.2 71 71 A F E -D 45 0A 6 -26,-2.4 -26,-2.7 -2,-0.3 2,-0.4 -0.992 17.5-132.4-144.4 147.6 -2.2 19.5 12.9 72 72 A D E -D 44 0A 79 -2,-0.3 2,-0.5 -28,-0.2 -28,-0.2 -0.804 9.8-157.6-100.6 144.8 0.2 18.4 15.6 73 73 A V E -D 43 0A 3 -30,-2.6 -30,-2.0 -2,-0.4 4,-0.1 -0.964 23.5-126.7-120.8 108.5 -0.6 15.6 18.1 74 74 A E - 0 0 130 -2,-0.5 3,-0.3 -32,-0.2 -35,-0.1 0.009 31.8-104.4 -47.7 161.1 1.4 15.7 21.3 75 75 A G S S+ 0 0 14 1,-0.2 -34,-0.2 -33,-0.1 -35,-0.2 -0.282 98.3 38.5 -83.1 175.0 3.2 12.5 22.2 76 76 A N S S+ 0 0 155 -36,-1.7 -36,-0.2 1,-0.2 2,-0.2 0.891 107.8 83.9 55.4 42.8 2.2 10.1 24.9 77 77 A S E -F 39 0B 28 -38,-1.1 -38,-3.7 -3,-0.3 2,-0.3 -0.686 66.6-125.9-150.9-164.7 -1.4 10.6 23.9 78 78 A S E -F 38 0B 36 -40,-0.3 -21,-1.9 -2,-0.2 2,-0.3 -0.962 12.7-162.4-153.8 166.0 -4.2 9.6 21.6 79 79 A F E -FH 37 56B 3 -42,-2.5 -42,-2.9 -2,-0.3 2,-0.3 -0.989 13.3-134.2-152.1 150.6 -6.6 11.2 19.2 80 80 A E E -FH 36 55B 63 -25,-2.9 -25,-2.1 -2,-0.3 2,-0.4 -0.803 17.4-161.8-102.0 147.9 -9.8 10.3 17.5 81 81 A L E -FH 35 54B 0 -46,-2.7 -46,-2.6 -2,-0.3 2,-0.5 -0.999 8.5-160.7-127.5 133.1 -10.6 11.0 13.8 82 82 A Q E -FH 34 53B 58 -29,-2.7 -29,-2.6 -2,-0.4 2,-0.5 -0.960 11.5-162.4-103.2 132.3 -13.9 11.1 12.0 83 83 A V E +F 33 0B 6 -50,-2.9 -50,-1.7 -2,-0.5 -31,-0.1 -0.974 14.5 176.3-115.7 117.5 -13.5 10.6 8.2 84 84 A K S S+ 0 0 139 -2,-0.5 2,-0.3 -33,-0.4 -1,-0.1 0.787 74.5 18.8 -89.9 -33.8 -16.6 11.7 6.2 85 85 A D S S- 0 0 117 -34,-0.4 -34,-0.4 -54,-0.1 -1,-0.3 -0.981 103.6 -80.3-137.4 146.4 -15.1 11.1 2.7 86 86 A A - 0 0 59 -2,-0.3 2,-0.4 -3,-0.1 -55,-0.2 -0.223 60.7-169.8 -51.9 131.3 -12.1 8.9 1.7 87 87 A T E -C 30 0A 2 -57,-2.4 -57,-2.2 -37,-0.1 2,-0.3 -0.978 23.3-141.8-137.2 137.9 -9.1 11.0 2.5 88 88 A A E +CE 29 49A 29 -39,-2.4 -40,-2.1 -2,-0.4 -39,-1.5 -0.746 28.7 178.6 -95.6 143.9 -5.3 10.9 1.8 89 89 A Y E -CE 28 47A 15 -61,-2.3 -61,-2.2 -2,-0.3 2,-0.4 -0.923 23.9-139.8-140.8 165.3 -2.9 12.1 4.6 90 90 A L E -CE 27 46A 42 -44,-2.7 -44,-3.3 -2,-0.3 2,-0.4 -0.970 17.1-163.1-126.7 138.9 0.8 12.5 5.3 91 91 A C E +CE 26 45A 6 -65,-2.9 -65,-2.1 -2,-0.4 2,-0.3 -0.997 12.0 170.6-128.3 127.6 2.3 11.7 8.8 92 92 A E E -CE 25 44A 62 -48,-2.4 -48,-2.5 -2,-0.4 -67,-0.1 -0.858 35.4-137.2-124.3 166.8 5.7 12.8 10.1 93 93 A Y 0 0 110 -69,-0.6 -68,-0.1 -2,-0.3 -48,-0.1 0.645 360.0 360.0-102.5 -22.4 7.3 12.6 13.7 94 94 A L 0 0 79 -50,-0.1 -1,-0.1 -53,-0.1 -51,-0.0 0.982 360.0 360.0 -37.7 360.0 8.5 16.1 13.1