==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 11-APR-03 1P1A . COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.S.RYU,K.J.LEE,S.H.BAE,B.K.KIM,K.A.KIM,B.S.CHOI . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5873.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 16.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 107 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-132.2 -11.6 -14.3 -3.3 2 2 A S + 0 0 107 19,-0.1 2,-0.3 20,-0.1 0, 0.0 0.735 360.0 27.4 -63.0 -22.9 -8.2 -15.8 -2.1 3 3 A H S S- 0 0 92 18,-0.2 2,-0.3 19,-0.1 18,-0.3 -0.887 73.2-156.2-129.9 165.7 -6.8 -12.3 -3.0 4 4 A M E -A 20 0A 60 16,-2.8 16,-2.3 -2,-0.3 2,-0.3 -0.960 16.2-126.2-140.3 151.9 -8.3 -8.8 -3.2 5 5 A Q E -A 19 0A 94 -2,-0.3 2,-0.3 14,-0.2 14,-0.3 -0.756 18.4-170.4-111.3 150.4 -7.3 -5.7 -5.2 6 6 A V E -A 18 0A 9 12,-2.5 12,-2.0 -2,-0.3 2,-0.5 -0.958 22.0-128.0-135.7 150.4 -6.4 -2.0 -4.2 7 7 A T E -Ab 17 72A 14 64,-0.8 66,-2.5 61,-0.4 2,-0.5 -0.900 29.9-159.9 -99.8 126.5 -5.8 1.3 -6.1 8 8 A L E -Ab 16 73A 0 8,-2.7 8,-2.3 -2,-0.5 2,-0.2 -0.942 11.8-171.0-119.9 125.2 -2.5 3.0 -5.1 9 9 A K E -Ab 15 74A 70 64,-3.0 66,-2.6 -2,-0.5 2,-0.3 -0.668 14.6-158.8 -99.3 161.4 -1.4 6.7 -5.5 10 10 A T E > - b 0 75A 13 4,-1.3 3,-0.8 -2,-0.2 4,-0.3 -0.891 37.2-103.0-136.0 166.0 2.1 7.9 -4.8 11 11 A L T 3 S+ 0 0 81 64,-0.7 65,-0.1 -2,-0.3 63,-0.0 0.374 113.6 71.7 -62.8 2.0 4.2 11.1 -4.0 12 12 A Q T 3 S- 0 0 118 2,-0.2 -1,-0.2 0, 0.0 3,-0.1 -0.183 114.7-105.1-119.6 35.5 5.3 10.9 -7.7 13 13 A Q S < S+ 0 0 197 -3,-0.8 2,-0.3 1,-0.1 -2,-0.1 0.767 83.0 106.6 55.1 40.3 1.9 12.0 -9.3 14 14 A Q - 0 0 79 -4,-0.3 -4,-1.3 2,-0.0 2,-0.3 -0.930 51.4-148.5-140.9 163.4 0.7 8.5 -10.6 15 15 A T E +A 9 0A 70 -2,-0.3 -6,-0.2 -6,-0.2 2,-0.2 -0.995 17.3 174.1-138.7 144.2 -1.8 5.7 -9.7 16 16 A F E -A 8 0A 28 -8,-2.3 -8,-2.7 -2,-0.3 2,-0.4 -0.826 24.5-122.9-142.6 176.5 -1.8 1.9 -10.1 17 17 A K E +A 7 0A 141 -10,-0.2 2,-0.3 -2,-0.2 -10,-0.2 -0.996 31.2 163.1-131.6 126.6 -3.7 -1.4 -9.4 18 18 A I E -A 6 0A 9 -12,-2.0 -12,-2.5 -2,-0.4 2,-0.3 -0.910 21.9-142.2-140.4 166.0 -2.4 -4.4 -7.4 19 19 A D E +A 5 0A 95 -2,-0.3 2,-0.3 -14,-0.3 -14,-0.2 -1.000 24.7 152.8-140.3 136.1 -3.8 -7.5 -5.6 20 20 A I E -A 4 0A 15 -16,-2.3 -16,-2.8 -2,-0.3 -2,-0.0 -0.896 55.8 -70.4-145.4 170.0 -2.8 -9.4 -2.4 21 21 A D > - 0 0 53 -18,-0.3 3,-1.7 -2,-0.3 41,-0.3 -0.615 40.6-145.0 -66.9 119.4 -4.3 -11.6 0.3 22 22 A P T 3 S+ 0 0 24 0, 0.0 41,-2.0 0, 0.0 -1,-0.1 0.620 96.1 61.2 -67.8 -12.4 -6.7 -9.2 2.4 23 23 A E T 3 S+ 0 0 140 39,-0.2 2,-0.1 38,-0.1 38,-0.1 0.467 87.9 90.3 -92.9 -3.0 -5.9 -11.1 5.7 24 24 A E S < S- 0 0 100 -3,-1.7 38,-2.8 1,-0.1 39,-0.2 -0.465 84.3-105.7 -76.9 162.5 -2.1 -10.3 5.4 25 25 A T B >> -E 61 0B 34 36,-0.3 3,-1.4 33,-0.2 4,-1.0 -0.314 36.6 -92.1 -78.7 170.7 -0.7 -7.1 7.0 26 26 A V H 3> S+ 0 0 2 34,-1.1 4,-2.6 31,-1.1 5,-0.3 0.806 119.7 76.3 -51.0 -29.4 0.3 -3.8 5.2 27 27 A K H 3> S+ 0 0 103 31,-0.4 4,-2.3 30,-0.2 -1,-0.2 0.869 96.0 46.2 -52.8 -40.4 3.9 -5.4 5.2 28 28 A A H <> S+ 0 0 27 -3,-1.4 4,-2.0 2,-0.2 -1,-0.2 0.946 114.7 45.3 -67.0 -49.5 2.8 -7.7 2.3 29 29 A L H < S+ 0 0 1 -4,-1.0 4,-0.5 1,-0.2 -2,-0.2 0.789 117.3 47.0 -62.6 -32.7 1.1 -4.8 0.3 30 30 A K H X S+ 0 0 11 -4,-2.6 4,-0.7 -5,-0.2 3,-0.3 0.858 111.3 48.7 -81.6 -38.7 4.2 -2.6 1.0 31 31 A E H >X S+ 0 0 76 -4,-2.3 4,-1.0 -5,-0.3 3,-0.6 0.900 103.7 61.7 -64.9 -41.2 6.8 -5.2 0.0 32 32 A K H 3< S+ 0 0 54 -4,-2.0 4,-0.2 1,-0.2 -1,-0.2 0.729 99.1 53.8 -65.3 -26.8 5.1 -6.1 -3.3 33 33 A I H >> S+ 0 0 1 -4,-0.5 4,-2.3 -3,-0.3 3,-1.0 0.787 98.5 62.6 -80.4 -26.7 5.4 -2.6 -4.9 34 34 A E H X - 0 0 18 -4,-2.0 4,-2.7 -5,-0.4 3,-1.7 0.445 17.8 -87.3 91.6 149.9 12.5 -0.6 -6.9 39 39 A K T 34 S+ 0 0 138 1,-0.3 -1,-0.1 2,-0.2 -4,-0.1 0.767 119.7 66.9 -51.8 -32.7 14.6 -0.1 -3.7 40 40 A D T 34 S+ 0 0 143 2,-0.2 -1,-0.3 1,-0.1 -2,-0.1 0.583 119.2 16.1 -71.0 -13.9 16.0 3.1 -5.3 41 41 A A T <4 S+ 0 0 44 -3,-1.7 -2,-0.2 -4,-0.1 -3,-0.1 0.582 136.8 29.6-133.1 -26.8 12.6 4.9 -5.2 42 42 A F S < S- 0 0 8 -4,-2.7 2,-0.2 -8,-0.1 -2,-0.2 -0.467 72.5-172.3-137.8 59.5 10.3 3.0 -2.7 43 43 A P > - 0 0 10 0, 0.0 3,-2.2 0, 0.0 35,-0.2 -0.401 21.8-140.5 -62.9 123.0 12.6 1.3 -0.0 44 44 A V G > S+ 0 0 34 1,-0.3 3,-0.9 -2,-0.2 -13,-0.0 0.836 102.0 55.0 -52.3 -40.7 10.5 -1.0 2.3 45 45 A A G 3 S+ 0 0 88 1,-0.2 -1,-0.3 34,-0.1 -3,-0.0 0.556 119.3 33.7 -67.1 -12.1 12.5 0.1 5.4 46 46 A G G < S+ 0 0 4 -3,-2.2 32,-2.9 33,-0.3 33,-1.4 -0.027 95.7 97.0-143.6 30.1 11.6 3.8 4.6 47 47 A Q E < -C 77 0A 6 -3,-0.9 2,-0.2 30,-0.2 30,-0.2 -0.942 45.1-169.9-126.6 155.2 8.1 3.8 3.0 48 48 A K E -C 76 0A 127 28,-2.8 28,-2.7 -2,-0.3 2,-0.3 -0.841 8.4-141.9-139.7 159.9 4.6 4.5 4.6 49 49 A L E -C 75 0A 12 7,-0.3 7,-1.3 -2,-0.2 2,-0.3 -0.981 7.8-169.2-139.3 148.7 0.8 4.2 3.6 50 50 A I E -CD 74 55A 38 24,-2.3 24,-3.0 -2,-0.3 2,-0.9 -1.000 16.9-149.3-136.5 132.2 -2.4 6.2 4.2 51 51 A Y E > S- D 0 54A 16 3,-1.9 3,-0.8 -2,-0.3 22,-0.2 -0.721 78.1 -60.9-102.5 78.9 -6.1 5.2 3.5 52 52 A A T 3 S- 0 0 71 -2,-0.9 -1,-0.1 1,-0.2 3,-0.1 0.684 125.4 -17.7 54.2 26.6 -7.5 8.7 2.8 53 53 A G T 3 S+ 0 0 64 1,-0.4 2,-0.3 0, 0.0 -1,-0.2 0.226 112.0 110.7 133.9 -9.0 -6.6 10.0 6.3 54 54 A K E < -D 51 0A 98 -3,-0.8 -3,-1.9 11,-0.1 2,-0.8 -0.783 65.3-129.4 -99.9 139.6 -6.1 6.7 8.3 55 55 A I E -D 50 0A 147 -2,-0.3 -5,-0.2 -5,-0.2 2,-0.1 -0.774 27.3-147.4 -99.5 102.7 -2.6 5.6 9.4 56 56 A L - 0 0 22 -7,-1.3 2,-0.4 -2,-0.8 -7,-0.3 -0.316 6.9-140.2 -78.4 156.7 -1.9 2.0 8.3 57 57 A N > - 0 0 73 3,-0.2 3,-1.8 1,-0.1 -31,-1.1 -0.957 16.8-145.0-130.4 127.1 0.2 -0.5 10.2 58 58 A D T 3 S+ 0 0 65 -2,-0.4 -31,-0.4 1,-0.3 -33,-0.2 0.546 106.5 49.9 -63.9 -4.9 2.8 -3.2 9.2 59 59 A D T 3 S+ 0 0 138 -33,-0.1 2,-0.4 -34,-0.1 -1,-0.3 0.212 98.3 76.0-120.6 11.4 1.4 -5.4 12.1 60 60 A T S < S- 0 0 45 -3,-1.8 -34,-1.1 -36,-0.0 -3,-0.2 -0.986 85.0-107.9-129.6 135.5 -2.4 -5.2 11.4 61 61 A A B > -E 25 0B 12 -2,-0.4 3,-1.8 -36,-0.2 4,-0.4 -0.314 24.5-120.4 -68.3 143.4 -4.3 -7.1 8.6 62 62 A L G > >S+ 0 0 10 -38,-2.8 3,-1.3 1,-0.3 5,-0.8 0.799 107.2 61.0 -59.1 -37.3 -5.6 -5.2 5.5 63 63 A K G > 5S+ 0 0 93 -41,-2.0 3,-1.1 1,-0.2 -1,-0.3 0.728 92.6 67.4 -62.3 -22.2 -9.3 -6.1 6.0 64 64 A E G < 5S+ 0 0 123 -3,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.682 97.3 52.7 -77.8 -14.4 -9.4 -4.3 9.5 65 65 A Y G < 5S- 0 0 31 -3,-1.3 -1,-0.3 -4,-0.4 -2,-0.2 0.472 108.3-133.4 -85.8 -5.8 -8.8 -0.9 7.6 66 66 A K T < 5 - 0 0 174 -3,-1.1 -3,-0.2 -4,-0.2 -2,-0.1 0.851 34.9-176.5 49.4 44.8 -11.9 -1.9 5.5 67 67 A I < - 0 0 16 -5,-0.8 2,-0.3 2,-0.0 -1,-0.1 -0.318 9.1-147.9 -64.3 153.3 -10.2 -0.9 2.2 68 68 A D > - 0 0 79 -61,-0.1 3,-1.9 1,-0.1 -61,-0.4 -0.967 23.5-125.7-136.7 143.8 -12.3 -1.2 -1.0 69 69 A E T 3 S+ 0 0 93 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.0 0.646 113.1 50.2 -59.7 -19.6 -11.8 -2.1 -4.8 70 70 A K T 3 S+ 0 0 193 2,-0.0 -1,-0.3 -64,-0.0 2,-0.2 0.270 107.3 62.2-106.5 6.7 -13.5 1.2 -5.8 71 71 A N S < S- 0 0 64 -3,-1.9 -64,-0.8 -64,-0.0 2,-0.3 -0.710 75.0-127.2-122.0 175.7 -11.4 3.5 -3.4 72 72 A F E -b 7 0A 84 -2,-0.2 2,-0.3 -66,-0.1 -64,-0.2 -0.890 5.5-149.6-133.5 160.5 -7.7 4.3 -3.2 73 73 A V E -b 8 0A 0 -66,-2.5 -64,-3.0 -2,-0.3 2,-0.4 -0.866 18.6-134.0-125.4 150.3 -4.7 4.4 -0.8 74 74 A V E -bC 9 50A 34 -24,-3.0 -24,-2.3 -2,-0.3 2,-0.3 -0.944 11.1-152.4-117.9 130.9 -1.6 6.7 -0.9 75 75 A V E -bC 10 49A 1 -66,-2.6 -64,-0.7 -2,-0.4 2,-0.3 -0.798 13.9-175.2-102.9 145.3 2.1 5.7 -0.4 76 76 A M E - C 0 48A 84 -28,-2.7 -28,-2.8 -2,-0.3 2,-0.3 -0.900 9.3-146.8-138.5 160.0 4.8 8.0 1.0 77 77 A V E + C 0 47A 34 -2,-0.3 -30,-0.2 -30,-0.2 -35,-0.0 -0.989 25.8 167.7-140.0 140.8 8.7 7.7 1.4 78 78 A T - 0 0 64 -32,-2.9 -31,-0.2 -2,-0.3 -1,-0.1 0.402 44.9-130.5-132.9 -3.9 11.3 9.0 4.0 79 79 A K - 0 0 143 -33,-1.4 -33,-0.3 1,-0.3 -34,-0.1 -0.443 61.7 -82.9 112.7 -43.1 14.4 6.8 2.8 80 80 A P - 0 0 54 0, 0.0 -1,-0.3 0, 0.0 -34,-0.1 0.646 42.4-138.2 -75.6 171.4 14.5 6.2 5.9 81 81 A K + 0 0 186 -2,-0.1 2,-0.3 2,-0.0 -2,-0.1 0.219 51.2 148.7 -73.9 12.3 16.4 9.1 7.6 82 82 A A + 0 0 91 0, 0.0 2,-0.3 0, 0.0 -36,-0.0 -0.370 14.8 152.4 -59.7 114.4 18.3 6.6 9.8 83 83 A V - 0 0 129 -2,-0.3 -2,-0.0 0, 0.0 2,-0.0 -0.965 48.9 -86.5-140.4 153.8 21.8 7.9 10.7 84 84 A S 0 0 121 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.314 360.0 360.0 -60.9 143.9 24.3 7.4 13.6 85 85 A T 0 0 199 -2,-0.0 -1,-0.2 0, 0.0 0, 0.0 0.369 360.0 360.0-154.8 360.0 24.0 9.7 16.6