==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 05-MAR-07 2P1H . COMPND 2 MOLECULE: APOPTOTIC PROTEASE-ACTIVATING FACTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.L.MILAM,N.I.NICELY,B.FEENEY,C.MATTOS,A.C.CLARK . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5421.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 72.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 54 57.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 88 0, 0.0 65,-0.1 0, 0.0 64,-0.1 0.000 360.0 360.0 360.0 78.9 -8.7 4.3 14.5 2 2 A S + 0 0 89 63,-0.5 65,-0.4 62,-0.2 64,-0.2 0.439 360.0 105.3 -96.6 -3.4 -8.8 1.1 16.6 3 3 A M S S- 0 0 15 62,-0.8 63,-0.1 60,-0.3 60,-0.0 -0.509 80.5 -95.2 -81.7 149.9 -6.5 2.5 19.3 4 4 A D > - 0 0 49 -2,-0.2 4,-2.5 1,-0.1 3,-0.3 -0.218 28.8-117.6 -61.8 148.9 -7.8 3.5 22.7 5 5 A A H > S+ 0 0 72 1,-0.2 4,-2.9 2,-0.2 5,-0.3 0.877 113.2 58.2 -52.9 -43.9 -8.6 7.2 23.3 6 6 A K H > S+ 0 0 141 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.914 110.0 42.4 -55.3 -47.6 -5.9 7.4 26.0 7 7 A A H > S+ 0 0 0 -3,-0.3 4,-2.4 2,-0.2 5,-0.2 0.937 114.7 50.1 -66.4 -48.3 -3.2 6.4 23.6 8 8 A R H X S+ 0 0 116 -4,-2.5 4,-2.5 1,-0.2 -2,-0.2 0.935 110.7 48.8 -56.2 -50.1 -4.4 8.5 20.8 9 9 A N H X S+ 0 0 83 -4,-2.9 4,-2.0 1,-0.2 -1,-0.2 0.837 110.6 51.2 -61.9 -33.6 -4.7 11.7 22.9 10 10 A C H X S+ 0 0 15 -4,-1.5 4,-0.9 -5,-0.3 -1,-0.2 0.942 110.4 48.4 -68.8 -45.5 -1.2 11.2 24.3 11 11 A L H >< S+ 0 0 0 -4,-2.4 3,-0.6 1,-0.2 4,-0.3 0.897 110.5 53.2 -60.1 -40.4 0.3 10.8 20.8 12 12 A L H >< S+ 0 0 46 -4,-2.5 3,-1.2 1,-0.2 4,-0.4 0.914 103.4 54.6 -62.9 -44.2 -1.6 13.9 19.7 13 13 A Q H 3< S+ 0 0 143 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.725 119.0 35.6 -63.7 -19.2 -0.2 16.1 22.6 14 14 A H T S+ 0 0 82 -3,-1.2 4,-2.2 -4,-0.3 5,-0.2 0.870 77.3 51.6 -50.1 -49.1 2.8 15.0 17.7 16 16 A E H > S+ 0 0 168 -4,-0.4 4,-1.2 1,-0.2 -1,-0.2 0.913 109.5 47.9 -57.6 -50.4 4.9 18.1 17.0 17 17 A A H > S+ 0 0 38 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.871 112.4 49.5 -62.1 -41.0 7.9 16.9 19.0 18 18 A L H X S+ 0 0 0 -4,-2.0 4,-2.2 1,-0.2 3,-0.3 0.950 109.3 49.7 -63.6 -52.0 7.9 13.4 17.3 19 19 A E H < S+ 0 0 26 -4,-2.2 36,-0.2 1,-0.2 37,-0.2 0.736 111.0 53.2 -61.4 -23.5 7.7 14.7 13.8 20 20 A K H < S+ 0 0 155 -4,-1.2 -1,-0.2 -5,-0.2 -2,-0.2 0.855 117.8 29.6 -81.3 -36.9 10.6 17.1 14.4 21 21 A D H < S+ 0 0 88 -4,-1.5 -2,-0.2 -3,-0.3 2,-0.2 0.713 95.9 92.1-100.3 -22.1 13.1 14.6 15.8 22 22 A I < - 0 0 0 -4,-2.2 2,-0.6 -5,-0.2 33,-0.2 -0.449 54.8-149.4 -85.7 151.8 12.5 11.2 14.2 23 23 A K > - 0 0 108 -2,-0.2 4,-1.0 1,-0.1 3,-0.3 -0.970 13.4-154.6-110.9 114.7 14.0 9.6 11.1 24 24 A T H > S+ 0 0 4 -2,-0.6 4,-3.2 27,-0.2 5,-0.3 0.787 78.8 74.7 -63.9 -32.1 11.3 7.2 9.7 25 25 A S H > S+ 0 0 56 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.913 102.8 36.7 -47.7 -57.9 13.7 4.8 7.8 26 26 A Y H > S+ 0 0 139 -3,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.890 118.0 51.1 -65.6 -42.1 15.0 3.0 10.9 27 27 A I H X S+ 0 0 0 -4,-1.0 4,-2.4 2,-0.2 -2,-0.2 0.949 112.3 45.8 -62.1 -49.7 11.6 3.1 12.8 28 28 A M H X S+ 0 0 3 -4,-3.2 4,-2.9 1,-0.2 5,-0.3 0.898 110.4 52.5 -62.4 -41.9 9.7 1.7 9.8 29 29 A D H X S+ 0 0 96 -4,-2.0 4,-2.5 -5,-0.3 -1,-0.2 0.876 110.8 49.2 -62.7 -34.8 12.2 -1.1 9.1 30 30 A H H X S+ 0 0 44 -4,-1.8 4,-2.1 2,-0.2 -2,-0.2 0.927 112.2 47.6 -69.0 -43.6 12.0 -2.1 12.7 31 31 A M H X>S+ 0 0 0 -4,-2.4 5,-2.7 2,-0.2 4,-1.1 0.899 114.7 45.2 -64.0 -42.6 8.1 -2.1 12.6 32 32 A I H ><5S+ 0 0 43 -4,-2.9 3,-0.7 2,-0.2 -1,-0.2 0.943 112.7 50.9 -65.0 -48.0 8.0 -4.1 9.4 33 33 A S H 3<5S+ 0 0 107 -4,-2.5 -2,-0.2 -5,-0.3 -1,-0.2 0.866 112.5 48.0 -57.0 -35.6 10.7 -6.5 10.8 34 34 A D H 3<5S- 0 0 79 -4,-2.1 -1,-0.3 -5,-0.2 -2,-0.2 0.707 119.2-116.7 -78.3 -19.9 8.5 -6.8 13.8 35 35 A G T <<5S+ 0 0 58 -4,-1.1 -3,-0.2 -3,-0.7 -2,-0.1 0.564 86.4 102.5 97.5 12.9 5.4 -7.4 11.7 36 36 A F S - 0 0 66 -2,-0.3 4,-2.2 1,-0.1 3,-0.2 -0.518 17.8-123.8 -89.6 158.6 3.2 -3.0 5.8 39 39 A I H > S+ 0 0 119 1,-0.2 4,-2.1 2,-0.2 5,-0.1 0.758 114.1 58.6 -69.2 -22.2 5.6 -2.3 2.9 40 40 A S H > S+ 0 0 93 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.853 107.8 44.7 -73.4 -35.9 2.7 -0.5 1.2 41 41 A E H > S+ 0 0 41 -3,-0.2 4,-1.4 2,-0.2 -2,-0.2 0.875 113.5 51.5 -74.4 -37.3 2.5 1.9 4.2 42 42 A E H X S+ 0 0 41 -4,-2.2 4,-2.7 1,-0.2 5,-0.2 0.907 106.3 53.2 -64.9 -42.6 6.3 2.3 4.2 43 43 A E H X S+ 0 0 87 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.907 105.7 54.2 -59.6 -43.5 6.5 3.1 0.5 44 44 A K H < S+ 0 0 92 -4,-1.3 -1,-0.2 1,-0.2 -2,-0.2 0.864 112.5 44.1 -59.0 -38.8 3.9 5.9 0.9 45 45 A V H >< S+ 0 0 0 -4,-1.4 3,-2.3 1,-0.2 -2,-0.2 0.941 110.4 51.7 -72.0 -50.2 6.0 7.5 3.7 46 46 A R H 3< S+ 0 0 157 -4,-2.7 -2,-0.2 1,-0.3 -1,-0.2 0.821 97.9 71.3 -55.5 -31.6 9.4 7.1 2.0 47 47 A N T 3< S+ 0 0 109 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.562 76.6 103.6 -63.3 -9.6 7.8 8.8 -1.0 48 48 A E S < S- 0 0 45 -3,-2.3 6,-0.1 1,-0.1 -3,-0.0 -0.590 71.3-137.6 -80.0 137.5 7.8 12.1 1.0 49 49 A P S S+ 0 0 101 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.762 78.0 43.5 -63.6 -33.0 10.4 14.7 0.0 50 50 A T S > S- 0 0 65 1,-0.1 4,-2.5 0, 0.0 5,-0.2 -0.826 76.2-121.2-122.4 161.2 11.5 15.8 3.5 51 51 A Q H > S+ 0 0 84 -2,-0.3 4,-2.7 2,-0.2 -27,-0.2 0.945 114.8 45.0 -58.7 -53.9 12.3 14.3 6.9 52 52 A Q H > S+ 0 0 94 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.895 114.4 51.1 -58.8 -40.8 9.6 16.2 8.8 53 53 A Q H > S+ 0 0 76 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.874 110.0 48.1 -65.6 -38.9 7.1 15.4 6.0 54 54 A R H X S+ 0 0 70 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.920 113.0 49.1 -67.0 -42.0 8.0 11.7 6.1 55 55 A A H X S+ 0 0 0 -4,-2.7 4,-2.6 -36,-0.2 -2,-0.2 0.914 109.7 51.7 -62.2 -43.9 7.6 11.8 9.9 56 56 A A H X S+ 0 0 25 -4,-2.8 4,-2.3 -37,-0.2 -1,-0.2 0.905 111.2 47.6 -60.8 -42.1 4.2 13.6 9.6 57 57 A M H X S+ 0 0 30 -4,-2.1 4,-2.1 2,-0.2 5,-0.2 0.915 110.7 51.0 -65.9 -43.5 3.0 10.9 7.2 58 58 A L H X S+ 0 0 0 -4,-2.5 4,-2.4 1,-0.2 -2,-0.2 0.930 112.4 47.0 -59.5 -44.6 4.2 8.1 9.4 59 59 A I H X S+ 0 0 0 -4,-2.6 4,-2.0 1,-0.2 -1,-0.2 0.895 108.0 56.6 -63.4 -41.2 2.4 9.7 12.4 60 60 A K H < S+ 0 0 98 -4,-2.3 4,-0.3 1,-0.2 -1,-0.2 0.892 112.2 41.4 -58.1 -41.9 -0.7 10.2 10.3 61 61 A M H >< S+ 0 0 14 -4,-2.1 3,-1.8 2,-0.2 4,-0.5 0.885 107.8 59.2 -75.8 -38.6 -0.9 6.5 9.5 62 62 A I H >< S+ 0 0 1 -4,-2.4 3,-1.6 1,-0.3 -2,-0.2 0.895 100.0 59.8 -55.8 -38.4 0.0 5.3 13.0 63 63 A L T 3< S+ 0 0 22 -4,-2.0 -60,-0.3 1,-0.3 -1,-0.3 0.711 103.6 51.3 -63.0 -19.4 -3.1 7.2 14.2 64 64 A K T < S+ 0 0 130 -3,-1.8 -1,-0.3 -4,-0.3 -2,-0.2 0.442 99.0 83.1 -96.9 -1.9 -5.2 5.0 11.9 65 65 A K S < S- 0 0 36 -3,-1.6 -62,-0.8 -4,-0.5 -63,-0.5 -0.373 80.1 -96.8 -95.7 178.3 -3.8 1.7 13.2 66 66 A D > - 0 0 52 -64,-0.2 4,-1.4 -65,-0.1 -63,-0.2 -0.099 40.7 -89.1 -85.9-175.0 -4.6 -0.5 16.3 67 67 A N H > S+ 0 0 52 -65,-0.4 4,-1.8 1,-0.2 5,-0.1 0.855 122.0 52.9 -65.7 -39.0 -3.1 -0.8 19.8 68 68 A D H > S+ 0 0 78 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.791 108.5 51.0 -70.8 -25.0 -0.6 -3.5 19.0 69 69 A S H > S+ 0 0 6 -3,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.836 108.6 52.0 -77.1 -33.4 0.8 -1.4 16.1 70 70 A Y H X S+ 0 0 0 -4,-1.4 4,-2.3 2,-0.2 -2,-0.2 0.863 108.9 50.3 -68.3 -36.4 1.1 1.6 18.4 71 71 A V H X S+ 0 0 39 -4,-1.8 4,-2.9 2,-0.2 -1,-0.2 0.858 108.4 52.5 -68.4 -36.2 3.1 -0.6 20.8 72 72 A S H X S+ 0 0 3 -4,-1.4 4,-2.2 2,-0.2 -2,-0.2 0.892 109.9 48.5 -65.4 -39.4 5.3 -1.7 18.0 73 73 A F H X S+ 0 0 0 -4,-1.9 4,-2.2 2,-0.2 -2,-0.2 0.918 111.3 50.1 -64.5 -46.4 6.0 2.0 17.2 74 74 A Y H X S+ 0 0 34 -4,-2.3 4,-2.0 1,-0.2 -2,-0.2 0.935 112.7 46.7 -57.1 -50.1 6.7 2.6 20.8 75 75 A N H X S+ 0 0 57 -4,-2.9 4,-1.7 1,-0.2 -1,-0.2 0.837 109.6 54.2 -63.1 -33.9 9.1 -0.3 20.9 76 76 A A H X S+ 0 0 0 -4,-2.2 4,-1.6 2,-0.2 -1,-0.2 0.872 106.9 51.6 -68.1 -38.1 10.7 0.9 17.6 77 77 A L H <>S+ 0 0 0 -4,-2.2 5,-1.7 1,-0.2 -2,-0.2 0.938 108.9 51.3 -62.2 -46.8 11.4 4.3 19.2 78 78 A L H <5S+ 0 0 56 -4,-2.0 3,-0.5 1,-0.2 -2,-0.2 0.839 116.7 38.6 -59.0 -37.5 13.0 2.6 22.2 79 79 A H H <5S+ 0 0 125 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.641 109.8 59.5 -91.5 -15.7 15.4 0.5 20.1 80 80 A E T <5S- 0 0 57 -4,-1.6 -1,-0.2 -3,-0.2 -2,-0.2 0.102 123.8 -90.1 -99.8 21.8 16.1 3.1 17.4 81 81 A G T 5S+ 0 0 60 -3,-0.5 -3,-0.2 -4,-0.1 -2,-0.1 0.938 92.7 116.0 74.7 49.2 17.6 5.7 19.8 82 82 A Y >< + 0 0 33 -5,-1.7 4,-2.1 -6,-0.1 3,-0.2 -0.251 19.7 142.2-141.3 48.9 14.5 7.7 20.8 83 83 A K H > S+ 0 0 151 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.845 72.3 55.0 -59.9 -37.9 14.2 7.1 24.5 84 84 A D H > S+ 0 0 138 2,-0.2 4,-0.9 1,-0.2 -1,-0.2 0.892 110.3 45.2 -64.4 -40.9 13.1 10.7 25.2 85 85 A L H > S+ 0 0 12 -3,-0.2 4,-0.9 1,-0.2 3,-0.2 0.886 114.8 49.0 -69.5 -38.8 10.3 10.6 22.7 86 86 A A H >X S+ 0 0 0 -4,-2.1 4,-1.7 1,-0.2 3,-0.6 0.889 103.5 58.7 -67.7 -41.2 9.2 7.1 24.0 87 87 A A H 3< S+ 0 0 69 -4,-2.7 4,-0.5 1,-0.3 -1,-0.2 0.818 103.9 54.7 -58.8 -29.3 9.2 8.2 27.7 88 88 A L H 3< S+ 0 0 67 -4,-0.9 -1,-0.3 -3,-0.2 -2,-0.2 0.834 112.8 41.5 -71.5 -33.6 6.7 10.8 26.7 89 89 A L H XX S+ 0 0 0 -4,-0.9 3,-1.8 -3,-0.6 4,-0.5 0.609 90.5 91.9 -89.2 -14.9 4.4 8.2 25.2 90 90 A H G >< S+ 0 0 114 -4,-1.7 3,-2.1 1,-0.3 -1,-0.1 0.906 79.6 54.8 -47.7 -56.5 4.9 5.6 27.9 91 91 A D G 34 S+ 0 0 102 -4,-0.5 -1,-0.3 1,-0.3 -2,-0.1 0.664 110.3 50.1 -57.0 -14.0 1.9 6.6 30.1 92 92 A G G <4 S+ 0 0 1 -3,-1.8 -1,-0.3 -85,-0.1 -2,-0.2 0.467 79.0 115.1-104.8 -0.8 -0.4 6.2 27.1 93 93 A I << 0 0 32 -3,-2.1 -26,-0.0 -4,-0.5 -3,-0.0 -0.541 360.0 360.0 -72.9 126.7 0.7 2.7 25.9 94 94 A P 0 0 102 0, 0.0 -1,-0.1 0, 0.0 -26,-0.1 0.967 360.0 360.0 -56.6 360.0 -2.1 0.2 26.2