==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEAR PROTEIN 04-OCT-10 3P3D . COMPND 2 MOLECULE: NUCLEOPORIN 53; . SOURCE 2 ORGANISM_SCIENTIFIC: PICHIA GUILLIERMONDII; . AUTHOR P.SAMPATHKUMAR,C.SHAWN,K.BAIN,J.GILMORE,T.GHEYI,S.ATWELL, . 87 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5149.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 59.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 21.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 16.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 19.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 266 A L 0 0 112 0, 0.0 51,-2.1 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 -3.4 -33.8 2.1 16.3 2 267 A A E -A 51 0A 12 49,-0.2 77,-2.0 77,-0.1 2,-0.3 -0.766 360.0-164.0-109.7 157.5 -30.3 1.3 14.8 3 268 A I E -AB 50 78A 2 47,-2.6 47,-2.6 -2,-0.3 2,-0.5 -0.911 18.7-129.0-130.8 157.9 -29.2 1.2 11.2 4 269 A L E -AB 49 77A 6 73,-3.0 73,-1.7 -2,-0.3 2,-0.4 -0.971 21.8-165.3-102.4 121.1 -26.2 -0.2 9.4 5 270 A V E +AB 48 76A 0 43,-2.8 43,-2.4 -2,-0.5 2,-0.3 -0.901 23.5 158.6-103.0 138.8 -24.4 2.4 7.1 6 271 A F E +AB 47 75A 81 69,-2.0 69,-2.8 -2,-0.4 41,-0.2 -0.966 28.6 65.4-154.4 164.4 -22.0 0.9 4.6 7 272 A G + 0 0 43 39,-2.2 66,-0.2 1,-0.3 40,-0.1 0.471 67.1 124.0 100.7 9.9 -20.0 1.1 1.3 8 273 A Y - 0 0 4 38,-0.3 -1,-0.3 67,-0.1 2,-0.2 -0.652 69.1-101.8-101.0 150.0 -17.6 3.9 2.2 9 274 A P > - 0 0 62 0, 0.0 3,-2.6 0, 0.0 4,-0.2 -0.528 35.8-118.6 -64.3 142.5 -13.8 3.9 2.1 10 275 A E G > S+ 0 0 53 1,-0.3 3,-1.6 2,-0.2 4,-0.3 0.829 113.6 66.5 -55.6 -33.1 -12.5 3.5 5.6 11 276 A T G 3 S+ 0 0 131 1,-0.2 -1,-0.3 2,-0.1 3,-0.2 0.733 102.2 50.4 -55.8 -20.1 -10.7 6.9 5.3 12 277 A M G <> S+ 0 0 12 -3,-2.6 4,-1.6 1,-0.1 3,-0.5 0.412 75.7 106.9-102.6 -1.6 -14.2 8.4 5.1 13 278 A A H <> S+ 0 0 23 -3,-1.6 4,-2.7 -4,-0.2 3,-0.4 0.862 78.9 48.0 -49.8 -53.2 -15.9 6.9 8.2 14 279 A N H > S+ 0 0 89 -4,-0.3 4,-2.8 1,-0.3 -1,-0.2 0.856 109.0 53.1 -63.3 -36.5 -16.0 9.9 10.4 15 280 A Q H > S+ 0 0 96 -3,-0.5 4,-2.0 2,-0.2 -1,-0.3 0.854 112.2 47.8 -62.6 -34.7 -17.4 12.2 7.7 16 281 A V H X S+ 0 0 0 -4,-1.6 4,-2.4 -3,-0.4 -2,-0.2 0.924 111.7 47.4 -74.4 -45.0 -20.2 9.6 7.3 17 282 A I H X S+ 0 0 5 -4,-2.7 4,-1.0 1,-0.2 -2,-0.2 0.949 112.4 51.5 -60.6 -47.1 -20.9 9.3 11.0 18 283 A A H >< S+ 0 0 36 -4,-2.8 3,-0.9 1,-0.2 4,-0.4 0.906 108.3 50.9 -56.7 -45.3 -21.0 13.0 11.2 19 284 A Y H >< S+ 0 0 47 -4,-2.0 3,-2.0 1,-0.2 -1,-0.2 0.937 104.9 57.3 -59.2 -43.3 -23.4 13.3 8.4 20 285 A F H >< S+ 0 0 0 -4,-2.4 3,-1.5 1,-0.3 4,-0.4 0.674 88.8 73.9 -70.3 -12.1 -25.7 10.8 10.0 21 286 A Q G X< S+ 0 0 78 -4,-1.0 3,-1.1 -3,-0.9 -1,-0.3 0.748 79.5 76.5 -65.1 -22.1 -26.0 12.9 13.1 22 287 A E G < S+ 0 0 144 -3,-2.0 -1,-0.2 -4,-0.4 -2,-0.2 0.674 92.0 53.6 -60.4 -17.6 -28.2 15.2 11.0 23 288 A F G < S- 0 0 39 -3,-1.5 2,-0.3 1,-0.4 -1,-0.2 0.640 126.0 -44.7 -93.1 -16.2 -31.0 12.6 11.5 24 289 A G S < S- 0 0 17 -3,-1.1 -1,-0.4 -4,-0.4 2,-0.2 -0.922 76.1 -53.6 166.4 167.2 -30.9 12.4 15.3 25 290 A T - 0 0 86 -2,-0.3 28,-0.6 -3,-0.1 2,-0.4 -0.497 54.8-135.6 -62.2 130.8 -28.8 12.2 18.3 26 291 A I B -D 52 0B 14 -2,-0.2 26,-0.2 26,-0.2 -1,-0.1 -0.779 10.2-158.1 -96.2 137.9 -26.5 9.2 18.1 27 292 A L + 0 0 77 24,-3.2 12,-0.4 -2,-0.4 -1,-0.1 0.865 67.0 89.1 -86.3 -38.9 -26.0 6.9 21.1 28 293 A E S S- 0 0 4 23,-0.4 2,-1.0 10,-0.1 -2,-0.1 -0.271 84.6-122.0 -51.3 147.0 -22.7 5.4 20.3 29 294 A D + 0 0 87 10,-0.5 2,-0.2 5,-0.0 -1,-0.1 -0.528 42.1 174.0 -92.7 62.5 -19.8 7.4 21.6 30 295 A F > - 0 0 14 -2,-1.0 3,-1.6 1,-0.1 4,-0.3 -0.510 38.2-125.8 -70.4 140.3 -17.9 8.1 18.3 31 296 A E G > S+ 0 0 65 1,-0.3 3,-1.6 2,-0.2 -1,-0.1 0.868 108.2 57.4 -53.1 -41.9 -15.0 10.4 18.7 32 297 A V G 3 S+ 0 0 66 1,-0.3 -1,-0.3 -3,-0.0 -2,-0.0 0.646 106.6 49.4 -70.8 -13.4 -16.3 12.8 16.0 33 298 A L G < S+ 0 0 23 -3,-1.6 2,-0.3 2,-0.0 -1,-0.3 0.379 83.0 125.8 -98.3 3.3 -19.6 13.3 17.9 34 299 A R < - 0 0 142 -3,-1.6 -3,-0.0 -4,-0.3 -5,-0.0 -0.474 40.2-166.5 -80.3 124.5 -17.9 14.1 21.2 35 300 A K 0 0 170 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.0 -0.162 360.0 360.0 -81.6 177.2 -18.9 17.3 22.9 36 301 A P 0 0 185 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.145 360.0 360.0-142.4 360.0 -17.1 19.1 25.8 37 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 38 313 A F 0 0 220 0, 0.0 -10,-0.1 0, 0.0 -11,-0.0 0.000 360.0 360.0 360.0 114.2 -24.4 3.5 26.6 39 314 A V - 0 0 28 -12,-0.4 -10,-0.5 12,-0.1 2,-0.2 -0.947 360.0-120.9-110.7 145.1 -24.5 1.5 23.4 40 315 A P - 0 0 69 0, 0.0 2,-0.5 0, 0.0 -12,-0.1 -0.563 27.8-104.8 -86.1 152.3 -21.4 -0.3 22.2 41 316 A I - 0 0 82 -2,-0.2 2,-0.5 -12,-0.1 9,-0.1 -0.626 31.8-173.9 -81.7 119.9 -19.8 0.4 18.9 42 317 A F + 0 0 70 -2,-0.5 7,-2.9 7,-0.2 2,-0.3 -0.979 29.2 130.4-109.0 119.8 -20.2 -2.2 16.2 43 318 A S E +C 48 0A 57 -2,-0.5 2,-0.2 5,-0.2 5,-0.2 -0.969 24.7 175.8-159.2 165.4 -18.2 -1.4 13.1 44 319 A G E > -C 47 0A 32 3,-2.2 3,-1.0 -2,-0.3 2,-0.5 -0.725 57.9 -41.7-149.7-160.9 -15.8 -2.9 10.6 45 320 A N T 3 S- 0 0 138 1,-0.2 -38,-0.1 -2,-0.2 3,-0.0 -0.692 128.4 -0.0 -80.2 126.6 -14.2 -1.8 7.4 46 321 A S T 3 S+ 0 0 48 -2,-0.5 -39,-2.2 -40,-0.1 -38,-0.3 0.642 122.7 73.1 66.5 21.6 -16.8 0.1 5.3 47 322 A W E < +AC 6 44A 21 -3,-1.0 -3,-2.2 -41,-0.2 2,-0.3 -0.965 48.4 178.1-159.2 146.8 -19.7 -0.3 7.7 48 323 A T E -AC 5 43A 4 -43,-2.4 -43,-2.8 -2,-0.3 2,-0.3 -0.997 25.4-131.3-141.4 148.4 -21.0 1.0 11.0 49 324 A K E -A 4 0A 20 -7,-2.9 2,-0.4 -2,-0.3 -45,-0.2 -0.756 26.2-169.0 -87.9 143.8 -23.9 0.4 13.2 50 325 A I E -A 3 0A 0 -47,-2.6 -47,-2.6 -2,-0.3 2,-0.5 -0.996 3.5-159.9-134.3 134.9 -25.5 3.7 14.3 51 326 A T E -A 2 0A 16 -2,-0.4 -24,-3.2 -49,-0.2 -23,-0.4 -0.969 5.8-166.2-124.8 126.2 -28.2 3.8 17.0 52 327 A Y B -D 26 0B 1 -51,-2.1 -26,-0.2 -2,-0.5 -28,-0.0 -0.410 30.2-114.9 -97.5 175.9 -30.6 6.7 17.5 53 328 A D S S+ 0 0 91 -28,-0.6 -27,-0.1 -2,-0.1 -51,-0.1 0.496 91.6 25.6 -80.1 -16.2 -33.0 7.7 20.5 54 329 A N S > S- 0 0 52 -53,-0.2 4,-1.1 -29,-0.2 3,-0.1 -0.974 76.2-111.3-154.7 157.6 -36.2 7.2 18.5 55 330 A P H > S+ 0 0 85 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.872 109.9 61.8 -65.0 -36.4 -38.0 5.5 15.6 56 331 A A H > S+ 0 0 53 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.892 101.9 51.0 -55.9 -46.2 -38.4 8.7 13.5 57 332 A S H > S+ 0 0 10 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.894 111.6 47.1 -61.4 -41.3 -34.6 9.2 13.3 58 333 A A H X S+ 0 0 14 -4,-1.1 4,-2.3 2,-0.2 -2,-0.2 0.924 111.8 50.4 -66.3 -45.6 -34.0 5.7 12.1 59 334 A V H X S+ 0 0 86 -4,-2.5 4,-0.7 1,-0.2 -2,-0.2 0.932 113.5 46.5 -56.7 -45.9 -36.8 5.9 9.5 60 335 A D H >< S+ 0 0 75 -4,-2.6 3,-0.6 1,-0.2 4,-0.2 0.871 110.2 51.4 -67.3 -42.5 -35.3 9.2 8.3 61 336 A A H >< S+ 0 0 0 -4,-2.4 3,-2.4 1,-0.2 -1,-0.2 0.904 102.2 62.4 -58.7 -41.4 -31.7 8.0 8.1 62 337 A L H >< S+ 0 0 56 -4,-2.3 3,-1.6 1,-0.3 -1,-0.2 0.756 88.7 69.5 -58.1 -29.3 -32.9 5.0 6.1 63 338 A L T << S+ 0 0 131 -4,-0.7 -1,-0.3 -3,-0.6 -2,-0.2 0.638 84.4 72.1 -65.0 -17.2 -34.1 7.3 3.3 64 339 A E T X + 0 0 43 -3,-2.4 3,-2.2 -4,-0.2 2,-0.4 0.381 66.5 128.8 -76.8 3.2 -30.4 8.0 2.6 65 340 A N T < S+ 0 0 96 -3,-1.6 10,-0.2 1,-0.3 3,-0.1 -0.467 79.3 12.8 -62.3 119.3 -30.1 4.6 1.1 66 341 A G T 3 S+ 0 0 43 8,-2.8 -1,-0.3 -2,-0.4 9,-0.1 0.334 91.8 144.4 94.1 -6.2 -28.4 5.0 -2.3 67 342 A A < - 0 0 28 -3,-2.2 7,-2.8 7,-0.3 2,-0.4 -0.369 50.7-126.2 -65.8 145.9 -27.4 8.6 -1.7 68 343 A V E -E 73 0C 103 5,-0.2 2,-0.4 -3,-0.1 5,-0.2 -0.806 28.9-173.2 -90.9 134.2 -24.1 9.7 -3.2 69 344 A F E > -E 72 0C 31 3,-3.3 3,-1.5 -2,-0.4 -53,-0.0 -0.974 66.8 -25.8-136.2 117.2 -21.9 11.2 -0.6 70 345 A N T 3 S- 0 0 109 -2,-0.4 -1,-0.1 1,-0.2 3,-0.1 0.891 129.7 -45.3 40.8 49.7 -18.6 12.8 -1.5 71 346 A G T 3 S+ 0 0 73 1,-0.2 2,-0.3 0, 0.0 -1,-0.2 0.576 121.2 92.7 77.8 12.2 -18.4 10.6 -4.7 72 347 A V E < S-E 69 0C 34 -3,-1.5 -3,-3.3 -63,-0.0 2,-0.4 -0.962 75.3-113.6-129.7 154.4 -19.4 7.2 -3.2 73 348 A L E -E 68 0C 116 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.730 29.9-148.5 -83.6 130.7 -22.7 5.5 -2.8 74 349 A L - 0 0 4 -7,-2.8 -8,-2.8 -2,-0.4 2,-0.4 -0.829 3.9-151.6 -97.3 139.8 -23.9 5.0 0.7 75 350 A G E -B 6 0A 5 -69,-2.8 -69,-2.0 -2,-0.4 2,-0.4 -0.876 12.5-177.3-103.9 141.5 -26.0 2.1 1.9 76 351 A V E +B 5 0A 3 -2,-0.4 -71,-0.2 -71,-0.2 -11,-0.1 -0.980 11.3 157.3-138.5 126.3 -28.4 2.3 4.8 77 352 A I E -B 4 0A 70 -73,-1.7 -73,-3.0 -2,-0.4 2,-0.1 -0.958 49.0 -85.8-138.6 158.5 -30.5 -0.6 6.1 78 353 A P E -B 3 0A 74 0, 0.0 -75,-0.3 0, 0.0 2,-0.1 -0.410 53.5-107.6 -59.1 137.3 -32.2 -1.4 9.4 79 354 A Y + 0 0 74 -77,-2.0 2,-0.3 -29,-0.2 -77,-0.1 -0.407 40.2 179.6 -60.5 140.1 -29.8 -3.1 11.8 80 355 A T > - 0 0 69 1,-0.1 4,-1.9 -2,-0.1 5,-0.2 -0.978 34.4-130.8-139.6 146.0 -30.2 -6.8 12.5 81 356 A K H > S+ 0 0 62 -2,-0.3 4,-2.4 1,-0.2 5,-0.2 0.894 108.2 58.1 -56.6 -43.6 -28.2 -9.1 14.7 82 357 A D H > S+ 0 0 99 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.908 105.7 47.9 -54.9 -46.7 -27.9 -11.7 11.9 83 358 A A H > S+ 0 0 24 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.934 112.4 46.9 -64.1 -49.2 -26.2 -9.2 9.6 84 359 A V H X S+ 0 0 9 -4,-1.9 4,-1.5 1,-0.2 -1,-0.2 0.886 111.6 53.7 -63.0 -36.2 -23.7 -7.9 12.1 85 360 A E H < S+ 0 0 61 -4,-2.4 3,-0.3 1,-0.2 -2,-0.2 0.931 108.1 48.4 -60.7 -48.7 -22.9 -11.6 13.0 86 361 A R H < S+ 0 0 196 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.795 109.2 54.8 -62.6 -29.4 -22.2 -12.5 9.4 87 362 A L H < 0 0 96 -4,-1.7 -1,-0.2 -5,-0.2 -2,-0.2 0.792 360.0 360.0 -75.6 -30.1 -19.9 -9.5 9.0 88 363 A Q < 0 0 143 -4,-1.5 -3,-0.2 -3,-0.3 -2,-0.1 0.698 360.0 360.0-106.1 360.0 -17.9 -10.6 12.0