==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 24-APR-03 1P4W . COMPND 2 MOLECULE: RCSB; . SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA AMYLOVORA; . AUTHOR P.PRISTOVSEK,K.SENGUPTA,F.LOEHR,B.SCHAEFER,M.WEHLAND VON . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6095.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 58.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 46 52.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 129 A Y 0 0 121 0, 0.0 36,-0.1 0, 0.0 73,-0.0 0.000 360.0 360.0 360.0 -86.9 9.9 -8.1 -28.0 2 130 A T + 0 0 73 85,-0.1 85,-0.0 72,-0.0 69,-0.0 -0.850 360.0 165.0-116.8 92.6 11.3 -5.1 -26.0 3 131 A P - 0 0 50 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.153 35.6-127.7 -69.6-157.4 15.3 -5.1 -25.9 4 132 A E S > S+ 0 0 151 3,-0.1 4,-1.8 4,-0.0 5,-0.1 0.596 88.9 26.1-123.1 -32.4 16.9 -1.7 -24.8 5 133 A S H > S+ 0 0 95 2,-0.2 4,-2.9 1,-0.2 5,-0.2 0.931 121.8 48.3-105.5 -43.2 19.6 -0.4 -27.2 6 134 A V H > S+ 0 0 63 2,-0.2 4,-2.8 3,-0.2 -1,-0.2 0.841 113.6 53.2 -55.4 -34.6 18.5 -2.0 -30.6 7 135 A A H > S+ 0 0 15 2,-0.2 4,-2.2 3,-0.2 5,-0.2 0.965 112.5 40.9 -68.1 -49.8 14.9 -0.6 -29.6 8 136 A K H X S+ 0 0 130 -4,-1.8 4,-1.6 2,-0.2 -2,-0.2 0.946 119.7 47.4 -60.5 -45.9 16.2 3.1 -29.1 9 137 A L H X S+ 0 0 104 -4,-2.9 4,-2.5 2,-0.2 3,-0.3 0.966 112.6 48.3 -50.5 -60.3 18.5 2.7 -32.2 10 138 A L H X S+ 0 0 22 -4,-2.8 4,-2.5 2,-0.2 5,-0.4 0.892 110.7 48.9 -56.6 -47.9 15.6 1.2 -34.5 11 139 A E H X S+ 0 0 92 -4,-2.2 4,-0.8 1,-0.2 -1,-0.2 0.840 114.6 48.4 -57.0 -31.7 13.0 3.9 -33.5 12 140 A K H < S+ 0 0 148 -4,-1.6 -2,-0.2 -3,-0.3 -1,-0.2 0.864 111.6 49.3 -72.1 -38.5 15.8 6.4 -34.3 13 141 A I H < S+ 0 0 131 -4,-2.5 -2,-0.2 -5,-0.1 -3,-0.2 0.960 128.8 21.2 -62.8 -56.8 16.6 4.6 -37.8 14 142 A S H < S+ 0 0 55 -4,-2.5 3,-0.3 -5,-0.1 -3,-0.2 0.968 79.5 174.7 -77.8 -60.7 12.9 4.5 -39.0 15 143 A A < + 0 0 71 -4,-0.8 2,-0.3 -5,-0.4 -4,-0.1 0.916 66.5 0.8 56.1 57.1 11.3 7.4 -36.8 16 144 A G - 0 0 21 1,-0.1 -1,-0.2 60,-0.0 64,-0.1 -0.817 58.0-154.8 143.8-106.2 7.7 7.5 -38.3 17 145 A G + 0 0 32 -2,-0.3 -1,-0.1 -3,-0.3 -2,-0.1 0.842 28.3 159.3 89.2 44.4 6.3 5.2 -41.1 18 146 A Y + 0 0 229 62,-0.0 -2,-0.0 0, 0.0 3,-0.0 0.745 39.8 104.5 -75.7 -26.5 3.4 7.5 -42.5 19 147 A G S S+ 0 0 60 1,-0.2 46,-0.0 46,-0.1 0, 0.0 -0.150 81.7 20.3 -55.2 169.8 3.2 5.7 -45.9 20 148 A D S S- 0 0 99 1,-0.1 -1,-0.2 2,-0.1 3,-0.0 0.921 77.1-144.6 -27.4 123.8 0.4 3.4 -46.4 21 149 A K S S+ 0 0 192 1,-0.2 2,-0.3 2,-0.0 -1,-0.1 0.739 88.9 24.2 -52.6 -29.3 -2.2 4.7 -43.7 22 150 A R S S- 0 0 195 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 -0.991 83.8-135.1-131.4 133.2 -3.4 1.0 -43.1 23 151 A L - 0 0 13 -2,-0.3 5,-0.3 1,-0.1 38,-0.0 -0.556 46.0 -76.1 -80.2 143.3 -1.2 -2.1 -43.8 24 152 A S > - 0 0 56 -2,-0.2 4,-3.1 3,-0.1 5,-0.2 0.133 48.1-102.6 -43.3 155.4 -2.9 -5.1 -45.7 25 153 A P H > S+ 0 0 96 0, 0.0 4,-2.5 0, 0.0 5,-0.1 0.918 121.4 34.9 -54.5 -58.4 -5.3 -7.5 -43.7 26 154 A K H > S+ 0 0 80 2,-0.2 4,-2.5 1,-0.2 5,-0.3 0.873 117.2 56.5 -62.7 -37.5 -3.0 -10.5 -43.2 27 155 A E H > S+ 0 0 11 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.972 110.7 44.6 -49.8 -57.7 0.1 -8.0 -42.9 28 156 A S H X S+ 0 0 28 -4,-3.1 4,-2.7 -5,-0.3 -2,-0.2 0.872 114.5 48.8 -56.1 -43.3 -1.9 -6.3 -39.9 29 157 A E H X S+ 0 0 84 -4,-2.5 4,-2.0 -5,-0.2 5,-0.2 0.969 113.7 45.0 -59.5 -56.3 -2.8 -9.7 -38.3 30 158 A V H X S+ 0 0 4 -4,-2.5 4,-2.1 1,-0.2 -2,-0.2 0.909 118.9 44.4 -54.6 -43.9 0.8 -11.2 -38.5 31 159 A L H X S+ 0 0 1 -4,-2.5 4,-3.3 -5,-0.3 5,-0.2 0.887 108.0 57.9 -66.3 -44.1 2.2 -7.8 -37.1 32 160 A R H X S+ 0 0 131 -4,-2.7 4,-1.6 -5,-0.2 -2,-0.2 0.887 112.6 40.0 -52.5 -44.9 -0.6 -7.5 -34.4 33 161 A L H X>S+ 0 0 32 -4,-2.0 4,-2.1 2,-0.2 5,-0.8 0.921 115.6 50.6 -72.2 -44.6 0.5 -10.9 -32.8 34 162 A F H <5S+ 0 0 23 -4,-2.1 -2,-0.2 -5,-0.2 -3,-0.2 0.945 115.0 45.1 -51.8 -49.8 4.3 -10.1 -33.3 35 163 A A H <5S+ 0 0 6 -4,-3.3 -2,-0.2 1,-0.2 -1,-0.2 0.790 112.8 51.9 -60.6 -35.7 3.6 -6.7 -31.6 36 164 A E H <5S- 0 0 99 -4,-1.6 -2,-0.2 -5,-0.2 -1,-0.2 0.835 127.7 -93.6 -62.7 -38.4 1.5 -8.5 -28.8 37 165 A G T <5S+ 0 0 42 -4,-2.1 -3,-0.2 1,-0.4 -4,-0.1 -0.048 82.4 124.2 145.7 -43.5 4.3 -11.1 -28.0 38 166 A F < - 0 0 68 -5,-0.8 -1,-0.4 4,-0.1 2,-0.2 -0.170 50.8-136.9 -60.7 143.4 3.7 -14.3 -30.2 39 167 A L > - 0 0 89 1,-0.0 4,-3.0 4,-0.0 3,-0.4 -0.624 32.4 -91.7 -97.3 157.3 6.6 -15.4 -32.5 40 168 A V H > S+ 0 0 28 1,-0.2 4,-2.3 -2,-0.2 5,-0.2 0.819 128.0 51.7 -37.4 -45.9 6.3 -16.7 -36.2 41 169 A T H > S+ 0 0 85 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.960 118.0 35.6 -51.8 -60.1 6.0 -20.4 -34.9 42 170 A E H > S+ 0 0 107 -3,-0.4 4,-3.1 2,-0.2 5,-0.2 0.887 114.4 56.9 -67.2 -41.6 3.0 -19.5 -32.4 43 171 A I H X S+ 0 0 1 -4,-3.0 4,-2.8 2,-0.2 -2,-0.2 0.930 110.2 46.7 -50.9 -49.7 1.5 -16.8 -34.9 44 172 A A H X>S+ 0 0 2 -4,-2.3 5,-2.2 -5,-0.3 4,-0.7 0.949 114.5 45.6 -57.3 -52.3 1.2 -19.7 -37.5 45 173 A K H <5S+ 0 0 177 -4,-2.1 3,-0.5 3,-0.2 -2,-0.2 0.914 116.3 46.4 -56.6 -46.8 -0.3 -22.2 -35.0 46 174 A K H <5S+ 0 0 140 -4,-3.1 -2,-0.2 1,-0.2 -3,-0.2 0.949 114.8 45.2 -58.1 -55.1 -2.8 -19.5 -33.6 47 175 A L H <5S- 0 0 49 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.526 119.5-115.0 -67.3 -2.8 -3.9 -18.3 -37.2 48 176 A N T <5S+ 0 0 150 -4,-0.7 2,-0.2 -3,-0.5 -3,-0.2 0.965 76.9 93.5 69.4 59.0 -4.1 -22.2 -38.2 49 177 A R S - 0 0 66 -2,-0.2 4,-1.6 1,-0.1 3,-0.2 -0.552 37.9-115.5 -82.2 153.8 2.5 -23.4 -41.4 51 179 A I H > S+ 0 0 70 -2,-0.2 4,-2.3 1,-0.2 5,-0.1 0.784 112.1 66.3 -55.2 -26.5 5.5 -21.2 -40.5 52 180 A K H > S+ 0 0 165 2,-0.2 4,-2.7 3,-0.2 5,-0.2 0.963 102.8 41.2 -59.7 -57.8 6.3 -20.9 -44.4 53 181 A T H > S+ 0 0 68 -3,-0.2 4,-2.1 1,-0.2 -2,-0.2 0.883 117.3 50.9 -61.9 -36.0 3.0 -18.9 -45.3 54 182 A I H X S+ 0 0 1 -4,-1.6 4,-3.0 2,-0.2 5,-0.2 0.901 110.5 48.7 -56.3 -47.8 3.6 -16.8 -42.1 55 183 A S H X S+ 0 0 34 -4,-2.3 4,-2.7 2,-0.2 5,-0.2 0.969 112.1 47.1 -65.5 -50.6 7.3 -16.1 -43.1 56 184 A S H X S+ 0 0 76 -4,-2.7 4,-2.4 2,-0.2 -2,-0.2 0.903 115.7 47.8 -47.8 -45.2 6.3 -15.1 -46.7 57 185 A Q H X S+ 0 0 30 -4,-2.1 4,-2.1 2,-0.2 -2,-0.2 0.919 113.5 44.5 -66.4 -47.3 3.5 -12.8 -45.1 58 186 A K H X S+ 0 0 32 -4,-3.0 4,-3.1 2,-0.2 -2,-0.2 0.866 115.0 50.2 -61.5 -39.4 5.9 -11.1 -42.5 59 187 A K H X S+ 0 0 116 -4,-2.7 4,-2.8 2,-0.2 5,-0.3 0.877 108.1 53.2 -66.1 -38.3 8.6 -10.7 -45.3 60 188 A S H X S+ 0 0 56 -4,-2.4 4,-2.2 -5,-0.2 -2,-0.2 0.924 114.8 41.3 -55.9 -46.8 5.9 -9.1 -47.6 61 189 A A H X S+ 0 0 0 -4,-2.1 4,-2.6 2,-0.2 5,-0.3 0.954 116.2 49.7 -64.3 -49.1 5.2 -6.6 -44.6 62 190 A M H X>S+ 0 0 44 -4,-3.1 5,-2.0 2,-0.2 4,-1.6 0.930 117.3 40.1 -49.8 -53.3 9.0 -6.2 -43.9 63 191 A M H <5S+ 0 0 160 -4,-2.8 -2,-0.2 3,-0.2 -1,-0.2 0.882 116.4 49.4 -68.4 -41.9 9.9 -5.5 -47.7 64 192 A K H <5S+ 0 0 109 -4,-2.2 -2,-0.2 -5,-0.3 -3,-0.2 0.917 117.3 41.1 -61.8 -45.0 6.7 -3.2 -48.3 65 193 A L H <5S- 0 0 42 -4,-2.6 -2,-0.2 -5,-0.2 -1,-0.2 0.780 113.2-119.8 -72.3 -28.8 7.4 -1.1 -45.1 66 194 A G T <5 + 0 0 67 -4,-1.6 2,-0.3 -5,-0.3 -3,-0.2 0.920 59.4 138.5 89.9 53.6 11.3 -0.9 -45.7 67 195 A V < - 0 0 25 -5,-2.0 -1,-0.2 -6,-0.1 -2,-0.1 -0.888 43.5-154.6-126.5 155.0 12.9 -2.6 -42.6 68 196 A D S S+ 0 0 163 -2,-0.3 2,-0.2 1,-0.0 3,-0.1 -0.259 72.9 49.0-125.5 51.2 15.9 -5.1 -42.1 69 197 A N S > S- 0 0 49 1,-0.1 4,-1.0 -7,-0.0 -1,-0.0 -0.875 73.5-123.8-175.6 143.9 15.0 -6.8 -38.7 70 198 A D H > S+ 0 0 82 -2,-0.2 4,-1.1 1,-0.2 3,-0.4 0.903 115.7 54.1 -56.9 -44.7 12.0 -8.6 -36.9 71 199 A I H > S+ 0 0 33 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.836 98.5 65.0 -58.7 -37.4 12.3 -6.0 -33.9 72 200 A A H > S+ 0 0 5 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.863 98.8 52.2 -56.2 -38.7 12.0 -3.1 -36.6 73 201 A L H X S+ 0 0 0 -4,-1.0 4,-2.3 -3,-0.4 -1,-0.2 0.903 108.3 51.5 -56.6 -45.0 8.4 -4.3 -37.4 74 202 A L H X S+ 0 0 8 -4,-1.1 4,-1.9 2,-0.2 -2,-0.2 0.929 111.5 46.7 -59.7 -46.0 7.6 -4.1 -33.6 75 203 A N H X S+ 0 0 14 -4,-2.4 4,-3.3 2,-0.2 -2,-0.2 0.950 109.1 56.4 -54.8 -55.4 9.1 -0.5 -33.5 76 204 A Y H X S+ 0 0 11 -4,-2.7 4,-2.5 2,-0.2 5,-0.4 0.918 108.6 45.1 -41.6 -59.1 7.0 0.4 -36.7 77 205 A L H X>S+ 0 0 5 -4,-2.3 4,-1.3 1,-0.2 5,-1.2 0.874 118.0 44.2 -60.9 -38.9 3.6 -0.7 -35.0 78 206 A S H <5S+ 0 0 45 -4,-1.9 -2,-0.2 3,-0.2 -1,-0.2 0.900 113.4 51.8 -63.7 -43.8 4.6 1.3 -31.7 79 207 A S H <5S+ 0 0 51 -4,-3.3 -2,-0.2 1,-0.2 -3,-0.2 0.935 120.0 33.0 -60.6 -53.2 5.9 4.4 -33.8 80 208 A V H <5S- 0 0 53 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.787 103.9-139.9 -64.7 -32.1 2.6 4.7 -35.9 81 209 A S T <5 + 0 0 85 -4,-1.3 -3,-0.2 -5,-0.4 -4,-0.1 0.938 42.3 157.8 62.9 54.6 0.5 3.5 -32.8 82 210 A M < + 0 0 65 -5,-1.2 -4,-0.1 3,-0.1 -5,-0.1 0.902 62.4 50.7 -69.7 -44.6 -2.0 1.2 -34.8 83 211 A T S S- 0 0 21 -6,-0.4 0, 0.0 2,-0.2 0, 0.0 -0.739 83.8-127.8 -89.3 147.3 -2.8 -1.0 -31.6 84 212 A P S S+ 0 0 133 0, 0.0 2,-0.8 0, 0.0 -1,-0.1 0.752 85.6 98.1 -65.4 -22.9 -3.9 0.5 -28.1 85 213 A V - 0 0 51 1,-0.1 -2,-0.2 2,-0.0 -4,-0.1 -0.554 63.5-159.2 -63.4 104.7 -1.1 -1.6 -26.4 86 214 A D 0 0 143 -2,-0.8 -1,-0.1 1,-0.2 -5,-0.0 0.704 360.0 360.0 -61.6 -24.6 1.8 0.9 -25.9 87 215 A K 0 0 70 -51,-0.0 -1,-0.2 -85,-0.0 -85,-0.1 -0.138 360.0 360.0 65.9 360.0 4.4 -2.1 -25.6