==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-APR-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 06-OCT-10 3P49 . COMPND 2 MOLECULE: GLYCINE RIBOSWITCH; . SOURCE 2 SYNTHETIC: YES; . AUTHOR E.B.BUTLER,J.WANG,Y.XIONG,S.STROBEL . 94 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6415.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 59.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 20.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 20.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 B T 0 0 130 0, 0.0 81,-0.1 0, 0.0 82,-0.1 0.000 360.0 360.0 360.0 63.0 25.3 -15.1 5.4 2 7 B R - 0 0 211 80,-0.5 80,-0.1 1,-0.1 78,-0.0 -0.983 360.0 -79.3-123.2 126.1 21.7 -16.5 5.7 3 8 B P + 0 0 82 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.283 63.7 157.5 -30.4 135.3 18.7 -14.2 5.3 4 9 B N - 0 0 25 53,-0.2 56,-0.1 1,-0.1 57,-0.1 -0.927 52.9-113.8-154.7 166.3 17.8 -12.1 8.3 5 10 B H S S+ 0 0 35 -2,-0.3 49,-0.5 55,-0.1 2,-0.3 0.933 103.6 53.0 -71.9 -51.6 16.0 -8.9 9.5 6 11 B T E S-A 53 0A 6 47,-0.2 76,-1.6 -3,-0.1 2,-0.3 -0.656 74.5-160.2 -86.4 142.6 19.2 -7.2 10.6 7 12 B I E -AB 52 81A 0 45,-1.7 45,-1.6 -2,-0.3 2,-0.5 -0.954 13.4-127.7-125.9 148.1 22.2 -6.9 8.1 8 13 B Y E -AB 51 80A 46 72,-3.9 72,-1.9 -2,-0.3 2,-0.4 -0.813 21.6-172.0-102.1 123.4 25.9 -6.2 8.9 9 14 B I E +AB 50 79A 0 41,-3.4 41,-2.8 -2,-0.5 2,-0.2 -0.953 14.8 156.3-116.4 133.0 27.8 -3.4 7.1 10 15 B N E +AB 49 78A 23 68,-2.3 68,-1.8 -2,-0.4 39,-0.2 -0.835 41.4 63.4-146.3-174.5 31.6 -2.9 7.4 11 16 B N S S+ 0 0 45 37,-0.7 2,-0.3 1,-0.3 -1,-0.2 0.989 71.5 139.7 47.9 61.4 34.6 -1.4 5.7 12 17 B L - 0 0 0 36,-1.1 -1,-0.3 -3,-0.1 61,-0.1 -0.946 65.8 -66.8-126.1 156.0 33.1 2.0 6.1 13 18 B N > - 0 0 41 59,-0.5 3,-0.6 -2,-0.3 35,-0.1 -0.028 37.9-149.6 -53.9 135.6 35.2 5.0 7.0 14 19 B E T 3 S+ 0 0 104 1,-0.2 -1,-0.1 34,-0.1 35,-0.0 -0.073 83.6 67.2-100.9 32.5 36.6 4.9 10.5 15 20 B K T 3 S+ 0 0 184 2,-0.1 2,-0.3 33,-0.0 -1,-0.2 0.140 72.8 111.7-133.3 18.1 36.6 8.7 11.2 16 21 B I S < S- 0 0 26 -3,-0.6 2,-0.3 1,-0.1 32,-0.1 -0.675 72.8-105.0-101.1 149.3 32.9 9.6 11.3 17 22 B K > - 0 0 119 -2,-0.3 4,-2.9 1,-0.1 5,-0.4 -0.563 26.7-127.5 -71.5 127.9 30.8 10.6 14.3 18 23 B K H > S+ 0 0 87 -2,-0.3 4,-1.2 1,-0.2 -1,-0.1 0.732 112.1 45.1 -46.4 -25.6 28.6 7.8 15.6 19 24 B D H > S+ 0 0 83 2,-0.2 4,-2.2 3,-0.1 -1,-0.2 0.939 114.5 44.5 -84.9 -55.5 25.7 10.3 15.3 20 25 B E H > S+ 0 0 87 1,-0.2 4,-1.5 2,-0.2 -2,-0.2 0.682 115.1 50.4 -67.7 -18.3 26.5 11.7 11.9 21 26 B L H X S+ 0 0 11 -4,-2.9 4,-2.1 2,-0.2 5,-0.2 0.908 106.7 53.3 -77.4 -50.2 27.2 8.2 10.6 22 27 B K H X S+ 0 0 72 -4,-1.2 4,-2.0 -5,-0.4 -2,-0.2 0.860 108.3 55.3 -48.3 -39.1 23.9 7.0 12.0 23 28 B K H X S+ 0 0 126 -4,-2.2 4,-2.4 1,-0.2 5,-0.2 0.992 107.0 44.8 -55.7 -66.0 22.4 9.9 10.0 24 29 B S H X S+ 0 0 28 -4,-1.5 4,-1.2 1,-0.2 -2,-0.2 0.777 113.8 50.8 -56.3 -33.5 23.8 9.0 6.6 25 30 B L H X S+ 0 0 0 -4,-2.1 4,-2.7 2,-0.2 3,-0.4 0.941 110.0 47.2 -71.0 -50.2 22.9 5.4 6.9 26 31 B H H X S+ 0 0 97 -4,-2.0 4,-1.7 1,-0.2 -2,-0.2 0.887 112.8 53.0 -55.4 -39.5 19.3 6.0 7.9 27 32 B A H < S+ 0 0 71 -4,-2.4 -1,-0.2 -5,-0.2 4,-0.2 0.813 114.3 40.5 -66.4 -32.7 19.2 8.4 4.9 28 33 B I H < S+ 0 0 29 -4,-1.2 3,-0.2 -3,-0.4 -2,-0.2 0.834 121.3 38.1 -86.4 -34.3 20.4 5.8 2.5 29 34 B F H >X S+ 0 0 1 -4,-2.7 3,-2.0 1,-0.2 4,-0.7 0.645 92.0 80.8 -97.0 -17.8 18.5 2.7 3.6 30 35 B S T 3< S+ 0 0 55 -4,-1.7 3,-0.3 -5,-0.3 -1,-0.2 0.777 82.8 69.0 -62.3 -26.8 15.0 4.1 4.6 31 36 B R T 34 S+ 0 0 174 -4,-0.2 -1,-0.3 1,-0.2 -2,-0.1 0.514 98.4 51.7 -68.1 -6.4 14.1 4.1 0.8 32 37 B F T <4 S- 0 0 40 -3,-2.0 2,-0.3 1,-0.3 -1,-0.2 0.710 124.4 -50.6-101.0 -29.7 14.2 0.2 1.0 33 38 B G S < S- 0 0 22 -4,-0.7 2,-0.8 -3,-0.3 -1,-0.3 -0.963 81.3 -36.2-178.5-164.5 11.9 -0.4 4.0 34 39 B Q - 0 0 110 -2,-0.3 21,-1.3 -3,-0.1 2,-0.9 -0.726 51.6-148.7 -83.6 111.8 11.1 0.5 7.6 35 40 B I E -C 54 0A 21 -2,-0.8 19,-0.2 19,-0.2 3,-0.1 -0.720 15.8-177.3 -83.0 105.7 14.3 1.0 9.5 36 41 B L E - 0 0 74 17,-1.7 2,-0.3 -2,-0.9 -1,-0.2 0.903 64.4 -21.3 -71.5 -43.0 13.7 -0.1 13.1 37 42 B D E -C 53 0A 72 16,-1.0 16,-2.7 2,-0.0 2,-0.5 -0.982 45.3-139.2-163.5 155.8 17.2 0.9 14.3 38 43 B I E -C 52 0A 12 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.896 23.6-160.1-120.4 98.9 20.8 1.5 13.3 39 44 B L E +C 51 0A 90 12,-0.6 12,-2.5 -2,-0.5 2,-0.3 -0.657 26.2 152.3 -79.4 126.6 23.2 -0.0 15.8 40 45 B V + 0 0 9 -2,-0.4 2,-0.3 10,-0.2 10,-0.1 -0.988 14.0 168.4-151.4 153.9 26.7 1.5 15.7 41 46 B S - 0 0 39 8,-0.5 8,-0.4 5,-0.5 7,-0.0 -0.936 34.3-133.0-153.1 177.3 29.7 2.2 17.9 42 47 B R + 0 0 124 -2,-0.3 2,-0.2 5,-0.1 5,-0.2 -0.058 54.9 135.8-127.8 30.8 33.3 3.2 17.9 43 48 B S > - 0 0 58 3,-0.2 3,-1.3 1,-0.1 4,-0.2 -0.569 68.7-111.0 -76.9 145.1 34.8 0.5 20.2 44 49 B L G > S+ 0 0 144 1,-0.3 3,-0.7 -2,-0.2 -1,-0.1 0.813 119.4 47.1 -44.9 -42.0 38.1 -1.0 19.0 45 50 B K G 3 S+ 0 0 181 1,-0.2 -1,-0.3 0, 0.0 -3,-0.0 0.813 120.2 38.0 -72.2 -30.2 36.3 -4.3 18.3 46 51 B M G X S+ 0 0 54 -3,-1.3 3,-0.8 3,-0.1 -5,-0.5 -0.058 83.3 136.9-116.0 31.7 33.4 -2.7 16.5 47 52 B R T < S+ 0 0 103 -3,-0.7 -36,-0.2 -4,-0.2 -5,-0.1 -0.193 70.9 12.4 -66.4 167.1 35.1 0.1 14.5 48 53 B G T 3 S+ 0 0 12 -38,-0.1 -36,-1.1 1,-0.1 -37,-0.7 0.611 108.5 106.3 38.7 27.2 34.2 0.8 10.9 49 54 B Q E < +A 10 0A 37 -3,-0.8 -8,-0.5 -8,-0.4 2,-0.3 -0.868 42.6 177.3-132.0 161.8 31.1 -1.5 11.2 50 55 B A E -A 9 0A 0 -41,-2.8 -41,-3.4 -2,-0.3 2,-0.3 -0.988 15.9-145.2-162.4 155.8 27.3 -1.0 11.5 51 56 B F E -AC 8 39A 59 -12,-2.5 -12,-0.6 -2,-0.3 2,-0.4 -0.946 6.2-164.9-125.1 150.1 24.0 -2.8 11.7 52 57 B V E -AC 7 38A 0 -45,-1.6 -45,-1.7 -2,-0.3 2,-0.4 -0.961 9.4-154.6-137.6 117.4 20.6 -1.9 10.3 53 58 B I E -AC 6 37A 13 -16,-2.7 -17,-1.7 -2,-0.4 -16,-1.0 -0.745 9.9-166.9 -92.9 136.4 17.5 -3.7 11.5 54 59 B F E - C 0 35A 0 -49,-0.5 -19,-0.2 -2,-0.4 3,-0.1 -0.846 26.7-130.5-117.4 156.4 14.4 -3.9 9.3 55 60 B K S S+ 0 0 117 -21,-1.3 2,-0.4 -2,-0.3 -1,-0.1 0.841 96.0 37.0 -72.9 -32.9 10.8 -4.9 10.3 56 61 B E S >> S- 0 0 70 -22,-0.2 3,-1.8 -51,-0.1 4,-1.1 -0.966 76.1-133.0-127.0 136.0 10.6 -7.4 7.4 57 62 B V H >> S+ 0 0 56 -2,-0.4 4,-2.0 1,-0.3 3,-0.8 0.888 104.9 66.1 -48.5 -44.8 13.3 -9.7 6.0 58 63 B S H 3> S+ 0 0 72 1,-0.3 4,-1.5 2,-0.2 -1,-0.3 0.706 100.0 49.5 -55.1 -27.6 12.3 -8.6 2.4 59 64 B S H <> S+ 0 0 13 -3,-1.8 4,-1.3 2,-0.2 -1,-0.3 0.804 107.7 53.9 -80.9 -32.3 13.5 -5.0 3.1 60 65 B A H < S+ 0 0 21 -4,-2.9 3,-1.1 -5,-0.1 2,-0.2 0.112 79.5 134.4 -88.3 18.2 23.5 -1.3 -2.0 68 73 B Q T 3 S- 0 0 97 -4,-0.4 10,-0.2 1,-0.3 9,-0.1 -0.517 76.7 -1.1 -78.5 136.3 26.5 -3.6 -2.2 69 74 B G T 3 S+ 0 0 41 8,-2.3 -1,-0.3 1,-0.2 9,-0.1 0.722 90.0 164.8 58.2 22.0 30.0 -2.1 -2.9 70 75 B F < - 0 0 70 -3,-1.1 7,-1.9 7,-0.2 2,-0.8 -0.582 47.1-111.3 -76.2 126.4 28.3 1.3 -3.1 71 76 B P B +D 76 0B 101 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.424 50.1 166.5 -65.7 102.9 30.8 4.1 -2.9 72 77 B F - 0 0 15 3,-3.0 -59,-0.5 -2,-0.8 3,-0.3 -0.948 68.6 -18.8-127.8 104.8 30.0 5.6 0.5 73 78 B Y S S- 0 0 69 -2,-0.5 -1,-0.1 1,-0.2 -60,-0.1 0.832 125.6 -54.0 69.4 37.5 32.6 8.1 2.0 74 79 B D S S+ 0 0 161 1,-0.2 -1,-0.2 -61,-0.1 -62,-0.0 0.771 123.5 99.3 63.3 27.5 35.4 6.8 -0.3 75 80 B K S S- 0 0 50 -3,-0.3 -3,-3.0 -5,-0.1 2,-0.6 -0.992 76.5-124.2-137.2 135.0 34.8 3.3 0.9 76 81 B P B -D 71 0B 71 0, 0.0 -6,-0.1 0, 0.0 -7,-0.1 -0.702 35.6-121.5 -73.5 120.1 32.9 0.6 -0.9 77 82 B M - 0 0 3 -7,-1.9 -8,-2.3 -2,-0.6 2,-0.5 -0.401 22.0-157.2 -59.1 134.3 30.2 -0.6 1.5 78 83 B R E +B 10 0A 119 -68,-1.8 -68,-2.3 -10,-0.2 2,-0.3 -0.940 18.9 180.0-117.5 108.9 30.5 -4.3 2.3 79 84 B I E +B 9 0A 4 -2,-0.5 2,-0.3 -70,-0.2 -70,-0.2 -0.752 9.2 155.7-113.6 150.8 27.1 -5.7 3.5 80 85 B Q E -B 8 0A 67 -72,-1.9 -72,-3.9 -2,-0.3 -2,-0.0 -0.973 45.2 -74.7-166.5 162.6 26.0 -9.2 4.6 81 86 B Y E -B 7 0A 30 -2,-0.3 -74,-0.2 -74,-0.2 -76,-0.0 -0.254 47.9-126.0 -68.9 151.6 23.4 -10.9 6.7 82 87 B A - 0 0 14 -76,-1.6 -80,-0.5 -81,-0.1 -1,-0.1 0.087 10.3-119.9 -83.5-167.6 23.7 -10.9 10.5 83 88 B K S S- 0 0 169 1,-0.3 2,-0.3 -82,-0.1 -1,-0.1 0.804 84.3 -15.7 -99.5 -49.8 23.7 -13.7 13.1 84 89 B T - 0 0 96 1,-0.1 -1,-0.3 -80,-0.0 -80,-0.0 -0.955 51.1-136.1-165.3 141.7 20.7 -12.8 15.3 85 90 B D - 0 0 30 -2,-0.3 -1,-0.1 -3,-0.1 3,-0.1 0.955 21.2-171.1 -72.5 -54.8 18.4 -9.8 15.8 86 91 B S + 0 0 87 1,-0.2 2,-0.2 2,-0.0 5,-0.1 0.912 53.3 84.2 59.3 50.9 18.1 -9.6 19.6 87 92 B D S S- 0 0 93 5,-0.0 -1,-0.2 3,-0.0 -2,-0.0 -0.470 103.9 -41.3-144.4-143.5 15.4 -6.9 19.7 88 93 B I S S+ 0 0 90 1,-0.2 -2,-0.0 -2,-0.2 -3,-0.0 0.843 137.8 47.1 -65.1 -33.4 11.6 -6.6 19.4 89 94 B I S > S+ 0 0 55 2,-0.1 3,-1.2 1,-0.0 2,-0.4 0.954 104.7 62.0 -73.4 -53.7 11.7 -9.2 16.6 90 95 B A T 3 S+ 0 0 19 1,-0.2 -3,-0.0 -6,-0.0 -1,-0.0 -0.649 118.1 12.7 -79.0 130.2 14.0 -11.7 18.3 91 96 B K T 3 0 0 200 -2,-0.4 -1,-0.2 1,-0.3 -2,-0.1 0.564 360.0 360.0 76.9 13.4 12.4 -13.2 21.5 92 97 B M < 0 0 171 -3,-1.2 -1,-0.3 0, 0.0 -5,-0.0 -0.902 360.0 360.0-141.5 360.0 9.0 -11.6 20.6 93 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 94 745 A G 0 0 215 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 52.9 25.6 47.3 95 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 96 746 A G 0 0 211 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 52.9 7.7 64.2