==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 25-APR-03 1P5A . COMPND 2 MOLECULE: ENVELOPE POLYPROTEIN GP160; . SOURCE 2 SYNTHETIC: YES; . AUTHOR L.M.GORDON,P.W.MOBLEY,W.LEE,S.ESKANDARI,Y.N.KAZNESSIS, . 23 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2277.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 12 52.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 8 34.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 159 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-140.5 12.3 -6.6 7.0 2 2 A V - 0 0 119 1,-0.1 2,-1.5 3,-0.0 3,-0.1 -0.776 360.0 -72.5-112.7 142.4 10.8 -3.7 9.0 3 3 A G > + 0 0 48 -2,-0.3 4,-2.2 1,-0.2 5,-0.2 -0.065 66.9 142.0 -57.4 82.2 7.8 -3.9 11.4 4 4 A I H >>S+ 0 0 124 -2,-1.5 4,-0.9 2,-0.2 5,-0.6 0.946 83.2 40.2 -71.9 -56.8 4.6 -4.3 9.2 5 5 A G H 4>S+ 0 0 47 1,-0.1 5,-1.6 3,-0.1 -1,-0.2 0.791 117.3 54.9 -62.9 -29.1 2.9 -6.8 11.7 6 6 A A H 4>S+ 0 0 64 3,-0.2 5,-2.8 4,-0.2 -2,-0.2 0.943 109.8 37.7 -77.9 -44.2 4.2 -4.5 14.6 7 7 A L H <>S+ 0 0 89 -4,-2.2 5,-2.3 3,-0.2 6,-0.2 0.997 129.0 23.4 -66.9 -60.6 2.9 -1.0 13.7 8 8 A F I <>S+ 0 0 111 -4,-0.9 5,-3.4 -5,-0.2 4,-0.2 0.988 133.9 27.6 -72.3 -64.7 -0.6 -1.8 12.2 9 9 A L I XS+ 0 0 129 -5,-0.6 5,-2.5 4,-0.2 -3,-0.2 0.858 133.2 32.3 -71.0 -47.1 -1.8 -5.1 13.6 10 10 A G I XS+ 0 0 31 -5,-1.6 5,-2.1 3,-0.2 4,-0.2 0.983 128.5 25.9 -74.3 -70.2 0.2 -5.1 16.8 11 11 A F I XS+ 0 0 121 -5,-2.8 5,-2.5 3,-0.2 -3,-0.2 0.866 137.8 21.8 -68.6 -46.0 0.4 -1.3 18.0 12 12 A L I