==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 19-MAR-07 2P6V . COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.WANG,D.M.TRUCKSES,S.TAKADA,T.MATSUMURA,N.TANESE, . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6402.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 71 73.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 59 60.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 582 A S 0 0 125 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -60.0 32.4 12.2 140.5 2 583 A S > - 0 0 60 1,-0.1 4,-2.9 4,-0.0 5,-0.2 -0.488 360.0-109.4 -68.5 155.8 35.0 9.8 142.1 3 584 A A H > S+ 0 0 74 2,-0.2 4,-2.7 1,-0.2 5,-0.1 0.855 122.8 51.1 -45.9 -40.9 38.4 9.6 140.4 4 585 A A H > S+ 0 0 74 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.916 110.2 47.1 -69.4 -44.6 37.4 6.1 139.3 5 586 A T H > S+ 0 0 65 1,-0.2 4,-2.1 2,-0.2 -2,-0.2 0.906 112.4 50.5 -64.1 -42.5 34.1 7.3 137.9 6 587 A E H X S+ 0 0 96 -4,-2.9 4,-2.4 1,-0.2 -2,-0.2 0.938 109.3 51.9 -59.0 -48.2 35.9 10.2 136.1 7 588 A T H X S+ 0 0 70 -4,-2.7 4,-2.1 1,-0.2 -2,-0.2 0.918 110.3 47.5 -54.2 -44.6 38.5 7.7 134.6 8 589 A M H X S+ 0 0 90 -4,-2.2 4,-2.1 1,-0.2 -1,-0.2 0.892 111.3 50.7 -69.8 -37.1 35.8 5.4 133.2 9 590 A E H X S+ 0 0 81 -4,-2.1 4,-2.5 1,-0.2 -1,-0.2 0.888 108.5 51.9 -68.0 -38.0 33.9 8.3 131.8 10 591 A N H X S+ 0 0 21 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.890 108.3 52.6 -62.1 -40.4 37.0 9.6 130.1 11 592 A V H X S+ 0 0 5 -4,-2.1 4,-2.6 -5,-0.2 -2,-0.2 0.941 109.9 47.0 -60.8 -48.1 37.6 6.2 128.6 12 593 A X H X S+ 0 0 167 -4,-2.1 4,-2.4 1,-0.2 -2,-0.2 0.932 112.3 50.3 -60.8 -44.3 34.2 6.0 127.1 13 594 A X H X S+ 0 0 136 -4,-2.5 4,-2.4 2,-0.2 -1,-0.2 0.896 110.5 50.4 -57.5 -38.3 34.4 9.5 125.7 14 595 A C H X S+ 0 0 0 -4,-2.3 4,-2.6 2,-0.2 5,-0.3 0.895 108.8 51.3 -74.5 -35.3 37.8 8.6 124.2 15 596 A X H X S+ 0 0 145 -4,-2.6 4,-2.6 2,-0.2 5,-0.2 0.921 111.1 47.8 -58.1 -44.2 36.4 5.5 122.6 16 597 A N H X S+ 0 0 89 -4,-2.4 4,-2.9 -5,-0.2 -2,-0.2 0.900 110.6 53.1 -64.7 -37.4 33.6 7.5 121.2 17 598 A F H X S+ 0 0 42 -4,-2.4 4,-1.8 2,-0.2 -2,-0.2 0.954 114.4 39.7 -60.6 -55.3 36.1 10.1 119.9 18 599 A L H X S+ 0 0 0 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.907 115.8 51.2 -66.2 -37.0 38.3 7.6 118.1 19 600 A S H X S+ 0 0 16 -4,-2.6 4,-2.5 -5,-0.3 -2,-0.2 0.931 108.4 52.4 -70.3 -38.1 35.3 5.6 116.8 20 601 A T H X S+ 0 0 47 -4,-2.9 4,-2.7 -5,-0.2 5,-0.2 0.909 106.3 53.8 -58.8 -39.7 33.7 8.8 115.4 21 602 A L H X S+ 0 0 16 -4,-1.8 4,-2.7 1,-0.2 -1,-0.2 0.918 110.1 47.3 -58.7 -43.7 36.9 9.6 113.6 22 603 A I H X S+ 0 0 0 -4,-2.1 4,-2.2 2,-0.2 -1,-0.2 0.939 111.9 49.7 -63.2 -46.4 36.9 6.2 112.0 23 604 A X H < S+ 0 0 129 -4,-2.5 -2,-0.2 2,-0.2 -1,-0.2 0.919 114.0 45.5 -57.2 -46.2 33.2 6.6 111.0 24 605 A L H >< S+ 0 0 106 -4,-2.7 3,-1.4 -5,-0.2 5,-0.3 0.940 114.9 47.4 -60.9 -48.4 33.7 10.0 109.5 25 606 A A H 3< S+ 0 0 4 -4,-2.7 3,-0.4 1,-0.3 10,-0.2 0.790 115.0 46.2 -66.5 -29.6 36.9 8.9 107.7 26 607 A S T 3< S+ 0 0 36 -4,-2.2 -1,-0.3 -5,-0.2 -2,-0.2 0.220 83.9 99.0 -92.4 6.5 35.1 5.7 106.3 27 608 A S S < S- 0 0 67 -3,-1.4 -1,-0.2 -4,-0.1 -2,-0.1 0.671 87.4-123.7 -77.5 -12.7 31.9 7.5 105.2 28 609 A G S S+ 0 0 68 -3,-0.4 -1,-0.1 -4,-0.2 -3,-0.1 0.615 97.0 94.0 77.8 4.9 32.8 7.8 101.5 29 610 A X S S+ 0 0 241 -5,-0.3 2,-0.2 2,-0.1 -4,-0.1 0.382 84.0 73.6 -92.0 -2.3 32.3 11.6 101.5 30 611 A Q S S- 0 0 88 -6,-0.1 2,-0.0 -5,-0.1 -5,-0.0 -0.739 97.2 -91.2-113.0 160.3 36.1 11.4 102.2 31 612 A S > - 0 0 58 -2,-0.2 4,-2.3 1,-0.1 5,-0.2 -0.347 31.7-127.4 -70.5 142.9 39.2 10.5 100.1 32 613 A T H > S+ 0 0 133 1,-0.2 4,-1.6 2,-0.2 -1,-0.1 0.848 111.2 51.8 -59.3 -33.3 40.2 6.9 100.1 33 614 A E H > S+ 0 0 141 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.870 107.3 51.8 -68.7 -44.6 43.7 7.9 101.1 34 615 A T H > S+ 0 0 15 2,-0.2 4,-2.8 1,-0.2 5,-0.3 0.950 108.9 51.4 -56.1 -49.7 42.5 10.0 104.0 35 616 A A H X S+ 0 0 11 -4,-2.3 4,-2.2 1,-0.2 -2,-0.2 0.884 110.7 46.6 -57.0 -40.5 40.5 7.2 105.3 36 617 A A H X S+ 0 0 49 -4,-1.6 4,-2.0 -5,-0.2 -1,-0.2 0.846 113.9 50.2 -71.0 -30.8 43.4 4.8 105.3 37 618 A N H X S+ 0 0 61 -4,-1.8 4,-2.4 2,-0.2 -2,-0.2 0.881 110.6 46.3 -76.6 -39.5 45.5 7.4 106.9 38 619 A V H X S+ 0 0 0 -4,-2.8 4,-2.6 2,-0.2 5,-0.2 0.926 111.8 53.1 -67.2 -46.0 43.1 8.2 109.7 39 620 A X H X S+ 0 0 88 -4,-2.2 4,-2.7 -5,-0.3 -2,-0.2 0.920 110.7 47.8 -53.1 -43.7 42.6 4.4 110.3 40 621 A E H X S+ 0 0 90 -4,-2.0 4,-2.8 2,-0.2 -1,-0.2 0.889 110.5 50.1 -70.1 -40.6 46.4 4.1 110.6 41 622 A L H X S+ 0 0 17 -4,-2.4 4,-2.0 2,-0.2 -1,-0.2 0.936 112.6 47.2 -55.2 -49.9 46.7 7.0 113.0 42 623 A V H X S+ 0 0 0 -4,-2.6 4,-2.6 2,-0.2 5,-0.2 0.953 113.9 48.1 -59.6 -48.9 44.0 5.6 115.2 43 624 A Q H X S+ 0 0 39 -4,-2.7 4,-2.7 -5,-0.2 6,-0.3 0.944 111.8 48.4 -60.5 -46.9 45.6 2.1 115.1 44 625 A N H <>S+ 0 0 37 -4,-2.8 5,-1.8 1,-0.2 6,-1.5 0.863 111.8 50.2 -58.6 -33.2 49.0 3.3 115.9 45 626 A L H ><5S+ 0 0 0 -4,-2.0 3,-1.4 -5,-0.2 -1,-0.2 0.941 112.6 45.8 -67.9 -52.5 47.8 5.4 118.8 46 627 A L H 3<5S+ 0 0 7 -4,-2.6 -2,-0.2 1,-0.3 -1,-0.2 0.839 112.7 51.4 -59.0 -33.7 45.9 2.5 120.2 47 628 A D T 3<5S- 0 0 60 -4,-2.7 -1,-0.3 -5,-0.2 -2,-0.2 0.399 114.4-116.0 -84.5 3.8 48.9 0.2 119.7 48 629 A G T < 5S+ 0 0 32 -3,-1.4 -3,-0.2 2,-0.2 -4,-0.1 0.583 82.3 122.7 71.4 9.6 51.2 2.6 121.5 49 630 A X S - 0 0 99 -2,-0.3 4,-2.6 -3,-0.0 3,-0.2 -0.519 34.3 -93.4-105.4 173.1 51.7 9.2 121.4 52 633 A A H > S+ 0 0 1 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.872 117.8 49.9 -58.4 -46.9 48.9 11.9 121.8 53 634 A E H > S+ 0 0 76 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.903 115.6 42.0 -63.3 -39.5 50.8 15.0 120.7 54 635 A D H > S+ 0 0 59 -3,-0.2 4,-2.1 1,-0.2 5,-0.2 0.882 112.7 53.6 -78.9 -34.8 52.1 13.4 117.5 55 636 A F H X S+ 0 0 0 -4,-2.6 4,-2.2 2,-0.2 -2,-0.2 0.968 111.4 45.8 -61.2 -46.7 48.8 11.8 116.7 56 637 A T H X S+ 0 0 5 -4,-2.8 4,-2.6 1,-0.2 5,-0.3 0.927 111.0 52.7 -67.4 -39.8 46.9 15.1 117.0 57 638 A S H X S+ 0 0 54 -4,-2.2 4,-1.4 -5,-0.2 -1,-0.2 0.905 114.0 43.1 -56.7 -44.3 49.5 17.0 114.9 58 639 A R H X S+ 0 0 132 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.813 111.8 53.7 -73.6 -29.9 49.2 14.5 112.2 59 640 A L H X S+ 0 0 6 -4,-2.2 4,-2.3 -5,-0.2 6,-0.2 0.895 105.3 52.1 -68.8 -46.2 45.5 14.3 112.4 60 641 A Y H <>S+ 0 0 33 -4,-2.6 5,-2.2 1,-0.2 4,-0.4 0.915 113.4 46.7 -57.7 -40.0 45.1 18.1 112.0 61 642 A R H ><5S+ 0 0 209 -4,-1.4 3,-0.5 -5,-0.3 -1,-0.2 0.925 112.1 50.3 -64.7 -43.2 47.2 17.9 108.9 62 643 A E H 3<5S+ 0 0 59 -4,-1.9 -2,-0.2 1,-0.3 -1,-0.2 0.849 122.9 29.7 -69.9 -34.8 45.4 14.8 107.5 63 644 A L T 3<5S- 0 0 60 -4,-2.3 -1,-0.3 -5,-0.1 -2,-0.2 0.303 104.0-125.0-104.2 2.0 41.9 16.3 107.9 64 645 A N T < 5 + 0 0 148 -3,-0.5 2,-0.3 -4,-0.4 -3,-0.2 0.957 59.8 153.7 45.4 56.7 43.1 19.8 107.5 65 646 A S < - 0 0 48 -5,-2.2 -1,-0.2 -6,-0.2 -2,-0.1 -0.733 45.5-104.4-110.5 167.9 41.5 20.6 110.7 66 647 A S - 0 0 91 -2,-0.3 -5,-0.0 -3,-0.1 -1,-0.0 -0.599 42.9 -93.0 -87.4 146.0 42.1 23.3 113.4 67 648 A P - 0 0 91 0, 0.0 -1,-0.1 0, 0.0 -10,-0.0 -0.276 26.1-152.1 -63.0 144.6 43.8 22.6 116.8 68 649 A Q >> - 0 0 107 1,-0.1 3,-1.8 -12,-0.0 4,-0.7 -0.963 3.4-155.8-118.1 104.5 41.9 21.8 120.0 69 650 A P T 34 S+ 0 0 110 0, 0.0 -1,-0.1 0, 0.0 3,-0.0 0.718 92.7 44.4 -56.6 -25.1 43.8 22.9 123.1 70 651 A Y T 3> S+ 0 0 198 1,-0.1 4,-1.7 2,-0.1 5,-0.2 0.504 93.2 85.6 -98.7 -2.5 42.1 20.4 125.5 71 652 A L H <> S+ 0 0 8 -3,-1.8 4,-2.4 2,-0.2 5,-0.2 0.932 86.4 47.6 -69.4 -49.4 42.5 17.4 123.1 72 653 A V H X S+ 0 0 28 -4,-0.7 4,-3.1 1,-0.2 5,-0.2 0.973 113.7 46.3 -58.1 -51.7 46.0 16.3 124.0 73 654 A P H > S+ 0 0 49 0, 0.0 4,-1.5 0, 0.0 -1,-0.2 0.871 112.0 53.2 -61.8 -33.8 45.5 16.3 127.7 74 655 A F H X S+ 0 0 29 -4,-1.7 4,-1.1 2,-0.2 -2,-0.2 0.941 112.7 43.3 -57.1 -52.2 42.1 14.5 127.2 75 656 A L H >X S+ 0 0 0 -4,-2.4 4,-2.5 1,-0.2 3,-0.7 0.929 110.2 57.3 -61.2 -45.7 43.8 11.8 125.2 76 657 A X H 3< S+ 0 0 156 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.855 110.5 42.4 -61.4 -32.6 46.8 11.5 127.6 77 658 A R H 3< S+ 0 0 139 -4,-1.5 -1,-0.3 -5,-0.2 4,-0.2 0.718 121.1 39.5 -86.3 -17.2 44.6 10.8 130.5 78 659 A S H S+ 0 0 77 0, 0.0 4,-1.1 0, 0.0 -1,-0.2 0.930 115.8 37.1 -56.9 -44.8 46.5 4.2 129.2 81 662 A A H > S+ 0 0 32 -4,-0.2 4,-1.7 2,-0.2 3,-0.2 0.914 117.4 50.3 -68.1 -48.0 43.2 2.7 130.4 82 663 A L H < S+ 0 0 0 -4,-2.5 4,-0.5 1,-0.2 -3,-0.2 0.895 108.2 54.2 -62.5 -36.0 41.6 2.5 126.9 83 664 A R H >< S+ 0 0 55 -4,-3.2 3,-1.1 -5,-0.2 -1,-0.2 0.919 107.2 49.2 -63.9 -35.3 44.7 0.8 125.6 84 665 A Q H 3< S+ 0 0 165 -4,-1.1 -1,-0.2 1,-0.3 -2,-0.2 0.798 114.7 48.6 -76.1 -26.1 44.5 -1.9 128.4 85 666 A L T 3< S+ 0 0 109 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.457 105.7 58.8 -84.5 -2.7 40.9 -2.3 127.4 86 667 A T < + 0 0 15 -3,-1.1 -1,-0.2 -4,-0.5 3,-0.2 -0.725 55.2 164.1-134.7 75.5 41.5 -2.5 123.7 87 668 A P S S+ 0 0 130 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 0.807 71.8 48.0 -76.9 -24.5 43.7 -5.5 123.2 88 669 A D > - 0 0 89 1,-0.1 4,-1.7 2,-0.0 3,-0.2 -0.854 60.0-178.9-118.1 96.4 42.9 -5.7 119.4 89 670 A S H > S+ 0 0 8 -2,-0.5 4,-2.4 1,-0.2 5,-0.2 0.884 83.6 56.1 -63.9 -37.2 43.1 -2.4 117.5 90 671 A A H > S+ 0 0 49 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.902 107.0 49.2 -59.7 -42.5 42.1 -3.8 114.1 91 672 A A H > S+ 0 0 42 2,-0.2 4,-3.0 1,-0.2 -1,-0.2 0.878 108.5 53.4 -65.2 -36.1 38.9 -5.2 115.6 92 673 A F H X S+ 0 0 18 -4,-1.7 4,-2.1 2,-0.2 -2,-0.2 0.946 111.6 45.9 -60.0 -46.3 38.1 -1.8 117.2 93 674 A I H < S+ 0 0 9 -4,-2.4 -2,-0.2 2,-0.2 -1,-0.2 0.934 114.0 48.3 -60.6 -49.7 38.5 -0.1 113.8 94 675 A Q H >< S+ 0 0 119 -4,-2.7 3,-0.9 1,-0.2 -1,-0.2 0.927 110.0 52.4 -60.4 -43.2 36.4 -2.8 112.2 95 676 A Q H 3< S+ 0 0 162 -4,-3.0 2,-0.8 1,-0.3 -1,-0.2 0.885 98.6 64.8 -65.0 -32.4 33.8 -2.4 114.8 96 677 A S T 3< 0 0 12 -4,-2.1 -1,-0.3 -5,-0.1 -2,-0.1 -0.031 360.0 360.0 -78.0 35.8 33.5 1.3 114.3 97 678 A Q < 0 0 108 -3,-0.9 -74,-0.1 -2,-0.8 -3,-0.1 -0.541 360.0 360.0-145.5 360.0 32.2 0.9 110.7