==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JUN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 12-OCT-10 3P7K . COMPND 2 MOLECULE: GP41 PEPTIDE; . SOURCE 2 SYNTHETIC: YES . AUTHOR H.V.M.NAMBOODIRI,E.B.SPRINGMAN . 45 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4764.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 91.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 88.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K > 0 0 190 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -63.5 28.2 -10.3 34.7 2 2 A I H > + 0 0 112 2,-0.2 4,-2.5 1,-0.2 5,-0.1 0.892 360.0 50.0 -65.4 -34.6 24.5 -9.2 34.5 3 3 A E H > S+ 0 0 142 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.893 110.4 48.4 -66.5 -42.5 26.0 -5.9 33.3 4 4 A A H > S+ 0 0 56 2,-0.2 4,-2.3 1,-0.2 -2,-0.2 0.880 111.7 50.0 -65.7 -39.0 28.1 -7.8 30.7 5 5 A I H X S+ 0 0 100 -4,-2.5 4,-2.1 2,-0.2 -2,-0.2 0.945 113.5 45.9 -64.9 -45.5 25.1 -9.8 29.6 6 6 A E H X S+ 0 0 110 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.916 112.2 49.7 -63.8 -46.7 23.0 -6.6 29.2 7 7 A K H X S+ 0 0 140 -4,-2.6 4,-1.6 1,-0.2 3,-0.2 0.952 112.9 46.8 -58.5 -49.5 25.7 -4.7 27.3 8 8 A K H X S+ 0 0 144 -4,-2.3 4,-2.1 1,-0.2 -1,-0.2 0.875 110.1 55.1 -63.0 -34.8 26.3 -7.6 24.9 9 9 A Q H X S+ 0 0 126 -4,-2.1 4,-2.0 1,-0.2 -1,-0.2 0.878 103.0 53.7 -66.9 -39.5 22.5 -7.9 24.4 10 10 A N H X S+ 0 0 76 -4,-2.2 4,-1.6 1,-0.2 -1,-0.2 0.905 110.5 48.6 -61.0 -40.2 22.1 -4.3 23.4 11 11 A N H X S+ 0 0 64 -4,-1.6 4,-2.6 2,-0.2 -2,-0.2 0.897 107.9 53.7 -65.2 -44.7 24.8 -4.8 20.7 12 12 A L H X S+ 0 0 95 -4,-2.1 4,-2.7 1,-0.2 5,-0.2 0.911 106.6 52.4 -57.2 -43.0 23.2 -8.0 19.4 13 13 A L H X S+ 0 0 91 -4,-2.0 4,-2.0 1,-0.2 -1,-0.2 0.905 110.7 48.4 -60.3 -43.5 19.9 -6.1 19.0 14 14 A R H X S+ 0 0 139 -4,-1.6 4,-2.1 2,-0.2 -2,-0.2 0.904 111.2 48.9 -65.6 -39.6 21.7 -3.5 17.0 15 15 A A H X S+ 0 0 48 -4,-2.6 4,-2.5 1,-0.2 -2,-0.2 0.919 111.8 48.9 -67.7 -40.9 23.4 -6.1 14.8 16 16 A I H X S+ 0 0 96 -4,-2.7 4,-2.1 2,-0.2 -1,-0.2 0.875 110.3 51.2 -65.4 -37.3 20.2 -7.9 14.1 17 17 A E H X S+ 0 0 89 -4,-2.0 4,-1.6 -5,-0.2 -1,-0.2 0.911 111.6 48.6 -65.0 -40.8 18.5 -4.6 13.2 18 18 A A H X S+ 0 0 58 -4,-2.1 4,-2.1 2,-0.2 -2,-0.2 0.881 111.8 47.1 -67.4 -39.0 21.3 -3.9 10.8 19 19 A Q H X S+ 0 0 129 -4,-2.5 4,-2.8 2,-0.2 -1,-0.2 0.876 105.6 61.2 -72.7 -29.8 21.2 -7.3 9.2 20 20 A Q H X S+ 0 0 106 -4,-2.1 4,-1.9 1,-0.2 -2,-0.2 0.933 108.5 42.7 -57.9 -48.8 17.4 -7.0 8.8 21 21 A H H X S+ 0 0 126 -4,-1.6 4,-2.3 2,-0.2 -1,-0.2 0.927 111.1 53.7 -66.2 -46.2 17.9 -3.9 6.6 22 22 A L H X S+ 0 0 100 -4,-2.1 4,-2.6 1,-0.2 -2,-0.2 0.915 108.4 52.1 -55.6 -44.0 20.7 -5.4 4.6 23 23 A L H X S+ 0 0 105 -4,-2.8 4,-3.0 2,-0.2 -1,-0.2 0.922 107.0 50.5 -58.1 -48.2 18.5 -8.4 3.9 24 24 A Q H X S+ 0 0 132 -4,-1.9 4,-2.6 1,-0.2 -1,-0.2 0.907 110.4 52.6 -58.8 -36.6 15.7 -6.2 2.6 25 25 A L H X S+ 0 0 105 -4,-2.3 4,-3.0 2,-0.2 -2,-0.2 0.952 110.3 45.3 -63.7 -49.8 18.2 -4.5 0.4 26 26 A T H X S+ 0 0 65 -4,-2.6 4,-2.4 2,-0.2 -2,-0.2 0.898 111.5 53.8 -62.9 -38.3 19.4 -7.8 -1.1 27 27 A V H X S+ 0 0 58 -4,-3.0 4,-1.8 2,-0.2 -1,-0.2 0.954 110.9 45.7 -61.0 -46.2 15.9 -9.0 -1.5 28 28 A W H X S+ 0 0 147 -4,-2.6 4,-1.7 1,-0.2 -2,-0.2 0.924 110.7 54.1 -64.2 -40.9 15.1 -5.8 -3.4 29 29 A G H X S+ 0 0 24 -4,-3.0 4,-1.8 1,-0.2 -1,-0.2 0.877 107.4 50.5 -57.1 -39.1 18.3 -6.2 -5.4 30 30 A I H X S+ 0 0 110 -4,-2.4 4,-2.3 1,-0.2 -1,-0.2 0.838 105.1 56.2 -70.2 -31.4 17.3 -9.7 -6.4 31 31 A K H X S+ 0 0 134 -4,-1.8 4,-2.1 1,-0.2 -1,-0.2 0.878 108.5 50.1 -65.8 -37.3 13.9 -8.5 -7.6 32 32 A Q H X S+ 0 0 85 -4,-1.7 4,-2.2 2,-0.2 -2,-0.2 0.888 110.8 45.8 -67.5 -43.5 15.8 -6.1 -9.9 33 33 A L H X S+ 0 0 90 -4,-1.8 4,-3.3 2,-0.2 5,-0.3 0.914 111.2 54.7 -67.1 -40.2 18.0 -8.7 -11.4 34 34 A Q H X S+ 0 0 108 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.946 109.4 46.4 -57.4 -48.8 15.0 -10.9 -11.9 35 35 A A H X S+ 0 0 50 -4,-2.1 4,-2.5 1,-0.2 -1,-0.2 0.910 115.6 46.5 -61.8 -43.9 13.2 -8.2 -13.8 36 36 A R H X S+ 0 0 168 -4,-2.2 4,-1.6 2,-0.2 -2,-0.2 0.904 113.0 47.4 -66.7 -42.3 16.3 -7.5 -15.9 37 37 A I H X S+ 0 0 94 -4,-3.3 4,-2.5 2,-0.2 -2,-0.2 0.913 111.8 53.7 -65.1 -40.0 17.0 -11.1 -16.7 38 38 A L H X S+ 0 0 66 -4,-2.7 4,-2.7 -5,-0.3 5,-0.3 0.978 106.1 49.5 -57.3 -59.3 13.3 -11.6 -17.6 39 39 A A H X S+ 0 0 62 -4,-2.5 4,-1.7 1,-0.2 -1,-0.2 0.833 112.1 51.1 -49.4 -36.7 13.3 -8.7 -20.1 40 40 A V H X S+ 0 0 85 -4,-1.6 4,-2.2 2,-0.2 -1,-0.2 0.926 108.6 49.3 -67.9 -46.7 16.4 -10.2 -21.7 41 41 A E H < S+ 0 0 94 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.927 113.2 47.9 -58.1 -43.9 14.9 -13.7 -22.0 42 42 A K H >< S+ 0 0 134 -4,-2.7 3,-0.9 1,-0.2 -1,-0.2 0.849 108.0 56.4 -66.3 -32.3 11.8 -12.2 -23.6 43 43 A K H 3< S+ 0 0 181 -4,-1.7 -1,-0.2 -5,-0.3 -2,-0.2 0.906 113.8 37.6 -66.7 -42.4 13.9 -10.2 -25.9 44 44 A I T 3< 0 0 143 -4,-2.2 -1,-0.2 -5,-0.1 -2,-0.2 0.219 360.0 360.0 -93.8 16.6 15.7 -13.3 -27.3 45 45 A E < 0 0 187 -3,-0.9 -3,-0.2 -5,-0.1 -2,-0.1 0.576 360.0 360.0-112.4 360.0 12.4 -15.3 -27.1