==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER REPLICATION 09-MAY-03 1P98 . COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.D.MUELLER,J.FEIGON . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5291.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 56.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 16.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 226 0, 0.0 19,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 54.0 48.5 8.8 -2.3 2 2 A A - 0 0 39 1,-0.1 18,-0.2 18,-0.1 17,-0.1 -0.165 360.0-120.6 -72.4 170.7 51.9 7.2 -1.7 3 3 A V - 0 0 41 16,-0.8 2,-0.3 15,-0.2 -1,-0.1 -0.052 22.6-104.5 -94.6-162.3 54.3 6.2 -4.4 4 4 A T - 0 0 61 -2,-0.1 14,-0.3 2,-0.0 15,-0.2 -0.820 32.2-158.1-131.9 95.7 55.9 2.8 -5.4 5 5 A I E -A 17 0A 0 12,-1.6 12,-0.6 13,-1.0 2,-0.3 -0.126 5.2-146.9 -60.6 166.8 59.5 2.5 -4.4 6 6 A T E -A 16 0A 28 61,-0.3 66,-2.0 10,-0.3 10,-0.3 -0.963 18.3-179.5-139.7 120.7 61.8 -0.1 -6.1 7 7 A L E -Ab 15 72A 0 8,-1.7 8,-1.5 -2,-0.3 2,-0.2 -0.676 8.5-169.7-113.7 171.4 64.6 -1.9 -4.3 8 8 A K E -Ab 14 73A 23 64,-0.9 66,-0.5 6,-0.2 6,-0.2 -0.812 9.7-151.9-164.3 120.1 67.2 -4.4 -5.3 9 9 A T S S- 0 0 12 4,-1.5 66,-0.1 -2,-0.2 -1,-0.1 0.701 75.3 -33.4 -62.1-127.6 69.6 -6.5 -3.2 10 10 A L S S- 0 0 128 64,-0.1 -1,-0.1 1,-0.1 4,-0.1 -0.067 101.7 -81.6 -91.4 36.3 72.9 -7.6 -4.8 11 11 A Q S S+ 0 0 140 2,-0.5 -1,-0.1 1,-0.0 3,-0.1 0.045 121.0 94.2 91.1 -22.2 71.1 -7.9 -8.2 12 12 A Q S S+ 0 0 165 1,-0.1 2,-0.4 -4,-0.0 -1,-0.0 0.832 89.6 34.2 -70.4 -34.1 69.8 -11.3 -7.2 13 13 A Q - 0 0 80 2,-0.0 -4,-1.5 0, 0.0 -2,-0.5 -0.974 63.0-179.4-128.7 140.1 66.5 -9.9 -5.9 14 14 A T E +A 8 0A 82 -2,-0.4 -6,-0.2 -6,-0.2 2,-0.2 -0.971 20.2 138.3-142.9 120.7 64.4 -6.9 -7.2 15 15 A F E -A 7 0A 24 -8,-1.5 -8,-1.7 -2,-0.4 2,-0.3 -0.659 35.2-124.2-143.3-166.4 61.2 -5.7 -5.7 16 16 A K E -A 6 0A 140 -10,-0.3 2,-0.4 -2,-0.2 -10,-0.3 -0.969 5.5-154.6-152.4 155.9 59.2 -2.6 -4.8 17 17 A I E -A 5 0A 13 -12,-0.6 -12,-1.6 -2,-0.3 -14,-0.1 -0.903 16.9-140.4-143.5 109.2 57.6 -1.1 -1.7 18 18 A R + 0 0 159 -2,-0.4 -13,-1.0 -14,-0.3 -15,-0.2 0.798 60.3 124.1 -24.5 -76.1 54.7 1.4 -1.9 19 19 A M - 0 0 13 -15,-0.2 -16,-0.8 -17,-0.1 -1,-0.0 0.205 60.5-102.0 38.3-157.0 55.9 3.5 1.0 20 20 A E - 0 0 70 -18,-0.2 3,-0.4 -16,-0.1 5,-0.3 -0.991 11.8-116.4-156.3 155.5 56.5 7.2 0.4 21 21 A P S S+ 0 0 34 0, 0.0 41,-1.7 0, 0.0 42,-0.2 0.518 111.1 64.0 -66.0 -3.7 59.4 9.7 -0.2 22 22 A D S S+ 0 0 124 39,-0.2 40,-0.1 38,-0.1 41,-0.1 0.902 81.3 89.2 -88.2 -43.9 58.3 11.4 3.1 23 23 A E S S- 0 0 83 -3,-0.4 38,-2.5 1,-0.1 39,-0.4 0.027 88.2-112.2 -52.0 160.3 59.1 8.5 5.5 24 24 A T - 0 0 61 36,-0.2 2,-0.5 37,-0.1 35,-0.2 0.097 48.7-107.2 -87.1 24.3 62.5 8.2 7.1 25 25 A V S > S+ 0 0 0 -5,-0.3 4,-1.7 33,-0.1 3,-0.5 0.011 105.4 95.9 78.5 -33.0 63.3 4.9 5.2 26 26 A K H > S+ 0 0 85 31,-1.3 4,-1.6 -2,-0.5 -1,-0.1 0.886 79.8 54.9 -56.6 -40.2 62.8 3.0 8.4 27 27 A V H > S+ 0 0 32 1,-0.2 4,-1.5 2,-0.2 -1,-0.3 0.848 105.7 53.5 -59.4 -35.4 59.3 2.2 7.5 28 28 A L H > S+ 0 0 0 -3,-0.5 4,-3.0 1,-0.2 5,-0.3 0.853 101.9 57.8 -65.7 -39.0 60.6 0.8 4.3 29 29 A K H X S+ 0 0 1 -4,-1.7 4,-2.3 1,-0.2 -1,-0.2 0.898 104.5 52.2 -58.1 -39.8 62.9 -1.4 6.2 30 30 A E H X S+ 0 0 103 -4,-1.6 4,-1.2 2,-0.2 -1,-0.2 0.886 113.4 43.4 -63.9 -40.0 59.8 -2.9 7.9 31 31 A K H X S+ 0 0 92 -4,-1.5 4,-1.4 2,-0.2 -2,-0.2 0.955 116.1 44.5 -69.9 -54.9 58.1 -3.6 4.6 32 32 A I H X S+ 0 0 0 -4,-3.0 4,-2.2 1,-0.3 5,-0.3 0.857 114.4 51.4 -57.2 -39.0 61.1 -5.1 2.8 33 33 A E H < S+ 0 0 47 -4,-2.3 -1,-0.3 -5,-0.3 -2,-0.2 0.824 106.7 54.0 -68.1 -31.3 62.0 -7.0 5.9 34 34 A A H < S+ 0 0 83 -4,-1.2 -2,-0.2 -5,-0.2 -1,-0.2 0.775 108.5 50.8 -71.4 -25.4 58.3 -8.3 5.9 35 35 A E H < S+ 0 0 81 -4,-1.4 -2,-0.2 2,-0.1 -1,-0.2 0.915 133.8 8.0 -73.5 -46.9 58.9 -9.4 2.3 36 36 A K S < S- 0 0 107 -4,-2.2 2,-0.2 1,-0.2 -3,-0.2 0.884 105.5-116.9-100.5 -65.4 62.1 -11.4 3.0 37 37 A G > - 0 0 21 -5,-0.3 4,-2.2 4,-0.2 -1,-0.2 -0.793 33.2 -68.0 145.7 176.8 62.7 -11.5 6.7 38 38 A R T 4 S+ 0 0 193 -2,-0.2 -1,-0.1 1,-0.2 6,-0.1 0.519 129.6 54.3 -73.2 -7.0 65.0 -10.4 9.5 39 39 A D T 4 S+ 0 0 148 2,-0.2 -1,-0.2 -6,-0.2 -2,-0.1 0.786 115.1 35.1 -94.1 -35.5 67.5 -12.9 8.0 40 40 A A T 4 S+ 0 0 30 1,-0.2 -2,-0.2 -7,-0.2 -7,-0.1 0.964 142.1 1.0 -81.3 -60.3 67.5 -11.5 4.5 41 41 A F S < S- 0 0 15 -4,-2.2 2,-0.4 -8,-0.2 -4,-0.2 -0.684 72.9-170.0-134.2 77.4 67.1 -7.8 5.2 42 42 A P >> - 0 0 29 0, 0.0 4,-1.0 0, 0.0 3,-0.8 -0.594 30.5-126.8 -68.4 123.5 66.9 -7.0 9.0 43 43 A V T 34 S+ 0 0 41 -2,-0.4 14,-0.2 1,-0.2 3,-0.1 0.720 107.6 65.8 -38.7 -32.7 65.8 -3.4 9.4 44 44 A A T 34 S+ 0 0 85 1,-0.2 -1,-0.2 -6,-0.1 13,-0.2 0.977 118.1 19.2 -54.5 -63.9 68.9 -3.1 11.6 45 45 A G T <4 S+ 0 0 12 -3,-0.8 2,-2.1 32,-0.1 32,-0.5 0.209 89.4 130.4 -96.0 13.9 71.4 -3.6 8.8 46 46 A Q < + 0 0 0 -4,-1.0 2,-0.3 30,-0.1 30,-0.2 -0.474 35.5 173.9 -71.3 83.0 68.9 -2.8 6.0 47 47 A K E -C 75 0A 67 -2,-2.1 28,-0.8 28,-1.8 2,-0.3 -0.650 14.8-157.6 -92.8 150.0 71.1 -0.3 4.2 48 48 A L E -CD 74 55A 0 7,-1.8 7,-2.0 -2,-0.3 2,-0.4 -0.920 5.0-146.9-127.5 152.6 70.1 1.2 0.9 49 49 A I E +CD 73 54A 34 24,-1.1 24,-1.8 -2,-0.3 2,-0.6 -0.931 15.7 177.2-130.1 109.8 72.1 2.7 -1.9 50 50 A Y E > S- D 0 53A 26 3,-1.1 3,-1.3 -2,-0.4 22,-0.1 -0.944 76.9 -12.6-117.6 116.7 70.8 5.6 -4.1 51 51 A A T 3 S- 0 0 94 -2,-0.6 -1,-0.2 1,-0.3 3,-0.1 0.812 128.8 -55.8 68.3 31.6 73.1 7.1 -6.8 52 52 A G T 3 S+ 0 0 74 1,-0.3 -1,-0.3 -3,-0.2 2,-0.1 0.258 119.7 111.2 83.5 -12.0 76.1 5.3 -5.2 53 53 A K E < -D 50 0A 143 -3,-1.3 -3,-1.1 11,-0.1 -1,-0.3 -0.447 66.0-119.2 -89.6 166.7 75.3 6.9 -1.8 54 54 A I E -D 49 0A 80 -5,-0.2 2,-0.3 -2,-0.1 -5,-0.2 -0.750 19.9-164.2-108.6 156.8 74.0 5.2 1.3 55 55 A L E -D 48 0A 0 -7,-2.0 -7,-1.8 -2,-0.3 2,-0.2 -0.994 4.2-161.4-144.6 131.7 70.7 5.7 3.2 56 56 A S > - 0 0 34 -2,-0.3 3,-1.4 -9,-0.2 -30,-0.1 -0.498 40.1 -93.7-105.0 174.2 69.8 4.6 6.8 57 57 A D T 3 S+ 0 0 34 1,-0.3 -31,-1.3 -14,-0.2 -30,-0.2 0.575 123.3 53.6 -64.5 -13.6 66.5 4.2 8.6 58 58 A D T 3 S+ 0 0 121 -33,-0.1 -1,-0.3 -32,-0.1 -33,-0.1 0.579 92.2 87.2 -99.0 -11.3 66.7 7.7 10.0 59 59 A V S < S- 0 0 30 -3,-1.4 -33,-0.2 -35,-0.2 2,-0.2 -0.576 84.4-107.3 -88.7 153.4 67.3 9.5 6.7 60 60 A P > - 0 0 50 0, 0.0 4,-0.6 0, 0.0 3,-0.4 -0.549 11.0-139.0 -78.6 139.9 64.3 10.7 4.5 61 61 A I T >4>S+ 0 0 0 -38,-2.5 5,-2.0 -41,-0.3 3,-0.7 0.822 108.1 58.7 -61.7 -29.9 63.5 8.8 1.3 62 62 A R G >45S+ 0 0 174 -41,-1.7 3,-1.8 -39,-0.4 -1,-0.2 0.819 93.4 65.4 -69.2 -29.9 63.0 12.2 -0.3 63 63 A D G 345S+ 0 0 105 -3,-0.4 -1,-0.2 1,-0.3 -2,-0.2 0.802 109.7 38.4 -59.7 -29.1 66.5 13.1 0.6 64 64 A Y G <<5S- 0 0 42 -3,-0.7 -1,-0.3 -4,-0.6 -2,-0.2 0.102 106.2-128.0-108.6 17.8 67.6 10.4 -1.9 65 65 A R T < 5 - 0 0 193 -3,-1.8 2,-1.8 1,-0.2 -3,-0.2 0.760 37.9-177.8 41.8 34.9 64.8 11.2 -4.4 66 66 A I < + 0 0 0 -5,-2.0 -1,-0.2 -45,-0.1 2,-0.2 -0.462 11.9 168.1 -73.8 87.3 63.9 7.5 -4.3 67 67 A D > - 0 0 69 -2,-1.8 3,-0.7 -3,-0.2 -61,-0.3 -0.526 49.1-108.0 -97.0 164.6 61.2 7.5 -6.9 68 68 A E T 3 S+ 0 0 99 1,-0.2 -1,-0.1 -2,-0.2 -2,-0.0 0.904 117.8 60.2 -53.1 -51.9 59.5 4.6 -8.6 69 69 A K T 3 S+ 0 0 180 2,-0.0 -1,-0.2 -64,-0.0 2,-0.2 0.743 110.9 51.2 -52.6 -26.2 61.2 5.2 -11.9 70 70 A N S < S- 0 0 70 -3,-0.7 2,-0.4 -5,-0.1 -64,-0.2 -0.669 75.6-151.8-105.7 163.7 64.4 4.7 -10.0 71 71 A F - 0 0 83 -2,-0.2 -64,-0.2 -66,-0.1 2,-0.2 -0.999 3.8-147.6-138.3 142.5 65.5 1.9 -7.7 72 72 A V E -b 7 0A 0 -66,-2.0 -64,-0.9 -2,-0.4 2,-0.6 -0.659 24.3-112.2-100.8 160.8 67.8 1.8 -4.8 73 73 A V E -bC 8 49A 46 -24,-1.8 2,-1.4 -2,-0.2 -24,-1.1 -0.846 17.3-147.8 -99.1 120.0 70.0 -1.1 -3.7 74 74 A V E + C 0 48A 2 -2,-0.6 2,-0.4 -66,-0.5 -26,-0.3 -0.639 27.8 174.3 -85.1 88.9 69.1 -2.8 -0.4 75 75 A M E - C 0 47A 103 -2,-1.4 -28,-1.8 -28,-0.8 2,-0.4 -0.778 8.2-172.9 -93.1 138.2 72.5 -3.9 0.8 76 76 A V - 0 0 26 -2,-0.4 -30,-0.1 -30,-0.2 -31,-0.0 -0.994 33.7-100.9-135.6 129.0 72.8 -5.5 4.3 77 77 A T 0 0 115 -32,-0.5 -32,-0.1 -2,-0.4 -31,-0.0 -0.109 360.0 360.0 -44.2 129.6 76.1 -6.4 6.2 78 78 A K 0 0 246 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.192 360.0 360.0-173.3 360.0 76.8 -10.1 5.9