==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 12-MAY-03 1P9K . COMPND 2 MOLECULE: ORF, HYPOTHETICAL PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR L.VOLPON,C.LIEVRE,M.J.OSBORNE,S.GANDHI,P.IANNUZZI,R.LAROCQUE . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5961.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 55.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 13.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 133 0, 0.0 2,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 131.5 -15.1 -17.0 23.9 2 2 A S + 0 0 126 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.570 360.0 95.5-151.6 80.3 -11.7 -15.3 24.2 3 3 A M + 0 0 181 -2,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.300 39.0 162.5-168.6 72.9 -10.6 -13.3 21.2 4 4 A I - 0 0 162 1,-0.1 2,-0.0 -3,-0.1 -2,-0.0 -0.728 29.0-131.0 -99.5 148.5 -11.3 -9.5 21.4 5 5 A H - 0 0 156 -2,-0.3 2,-0.3 2,-0.0 -1,-0.1 -0.129 12.5-131.4 -84.4-174.9 -9.7 -6.9 19.1 6 6 A R S S- 0 0 222 -2,-0.0 2,-0.7 0, 0.0 3,-0.0 -0.879 74.9 -29.3-147.6 109.9 -8.0 -3.6 20.2 7 7 A M S S- 0 0 186 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 0.018 95.0-115.3 74.4 -31.3 -8.7 -0.3 18.5 8 8 A S - 0 0 82 -2,-0.7 2,-0.8 1,-0.2 -1,-0.1 0.780 19.2-138.7 67.7 116.0 -9.5 -2.2 15.3 9 9 A N + 0 0 157 2,-0.1 2,-1.2 1,-0.0 -1,-0.2 -0.746 29.8 167.3-108.7 83.9 -7.1 -1.7 12.3 10 10 A M - 0 0 158 -2,-0.8 2,-1.0 2,-0.1 65,-0.1 -0.588 10.8-179.8 -96.6 71.8 -9.3 -1.5 9.3 11 11 A A + 0 0 23 -2,-1.2 65,-2.0 63,-0.2 2,-0.4 -0.626 13.0 158.6 -77.2 102.6 -6.8 -0.2 6.8 12 12 A T E -a 76 0A 65 -2,-1.0 2,-0.3 63,-0.2 65,-0.2 -0.982 22.2-160.7-132.3 123.2 -8.7 0.1 3.5 13 13 A F E -a 77 0A 14 63,-3.4 65,-2.5 -2,-0.4 2,-0.3 -0.705 12.9-133.9-100.9 152.8 -7.7 2.4 0.6 14 14 A S E +a 78 0A 85 -2,-0.3 65,-0.2 63,-0.2 16,-0.0 -0.749 26.3 167.8-105.8 153.5 -9.9 3.5 -2.3 15 15 A L - 0 0 15 63,-1.4 2,-0.8 -2,-0.3 64,-0.2 0.588 18.3-169.0-129.3 -40.2 -9.2 3.6 -6.0 16 16 A G - 0 0 44 62,-0.6 -1,-0.1 1,-0.2 48,-0.1 -0.722 64.2 -30.1 86.4-111.5 -12.5 4.2 -7.8 17 17 A K S S+ 0 0 194 -2,-0.8 -1,-0.2 62,-0.2 62,-0.1 -0.361 92.8 129.1-143.9 57.4 -12.2 3.7 -11.5 18 18 A H - 0 0 120 -3,-0.1 3,-0.1 1,-0.1 -2,-0.0 -0.678 67.5-112.0-110.0 165.8 -8.6 4.5 -12.5 19 19 A P S S- 0 0 115 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.902 79.4 -70.0 -62.6 -41.2 -6.0 2.5 -14.5 20 20 A H - 0 0 57 41,-0.1 2,-0.3 -5,-0.1 43,-0.2 -0.972 47.2-106.2 171.4-170.4 -3.8 2.0 -11.5 21 21 A V - 0 0 21 41,-0.6 39,-0.5 39,-0.6 41,-0.4 -0.979 23.3-109.1-145.8 159.0 -1.6 3.7 -9.0 22 22 A E >> - 0 0 39 -2,-0.3 4,-2.0 37,-0.2 3,-1.5 -0.676 34.5-116.1 -88.8 139.2 2.1 4.0 -8.0 23 23 A L H 3> S+ 0 0 11 -2,-0.3 4,-1.8 1,-0.3 5,-0.2 0.784 119.9 55.1 -42.5 -30.5 3.3 2.4 -4.8 24 24 A C H 3> S+ 0 0 24 34,-0.4 4,-2.8 2,-0.2 5,-0.3 0.886 107.5 47.1 -72.5 -40.2 4.0 6.0 -3.6 25 25 A D H <> S+ 0 0 71 -3,-1.5 4,-2.3 2,-0.2 5,-0.4 0.965 114.3 45.2 -65.7 -53.7 0.4 7.2 -4.3 26 26 A L H X S+ 0 0 14 -4,-2.0 4,-2.0 2,-0.2 -2,-0.2 0.922 121.5 39.9 -54.8 -48.7 -1.2 4.2 -2.6 27 27 A L H X>S+ 0 0 2 -4,-1.8 5,-2.7 -5,-0.3 4,-1.3 0.986 115.6 47.8 -65.8 -63.0 1.1 4.5 0.4 28 28 A K H ><5S+ 0 0 110 -4,-2.8 3,-1.3 1,-0.2 -3,-0.2 0.925 117.5 42.8 -43.8 -59.4 1.3 8.3 0.7 29 29 A L H 3<5S+ 0 0 120 -4,-2.3 -1,-0.2 -5,-0.3 -2,-0.2 0.920 111.1 54.8 -56.1 -47.5 -2.4 8.7 0.5 30 30 A E H 3<5S- 0 0 45 -4,-2.0 -1,-0.3 -5,-0.4 -2,-0.2 0.678 123.9-106.6 -62.1 -15.2 -3.0 5.7 2.8 31 31 A G T <<5S+ 0 0 56 -4,-1.3 -3,-0.2 -3,-1.3 -2,-0.1 0.720 84.4 123.4 96.0 24.7 -0.8 7.5 5.3 32 32 A W S S+ 0 0 67 4,-0.1 3,-0.7 5,-0.1 6,-0.1 0.261 87.6 102.8-138.3 5.9 10.2 8.6 -0.5 38 38 A Q T 3 S+ 0 0 146 1,-0.3 -5,-0.0 2,-0.1 0, 0.0 0.988 95.3 27.0 -54.9 -74.7 11.6 9.9 2.8 39 39 A A T 3 S- 0 0 65 1,-0.1 -1,-0.3 3,-0.0 5,-0.0 0.234 118.5-105.7 -74.6 15.7 12.0 6.7 4.7 40 40 A K S <> S+ 0 0 154 -3,-0.7 4,-2.0 1,-0.1 5,-0.3 0.776 74.5 148.2 64.5 24.6 12.4 4.9 1.4 41 41 A I H > + 0 0 14 3,-0.2 4,-1.3 2,-0.2 -4,-0.1 0.697 63.7 57.6 -63.7 -18.9 8.8 3.6 1.9 42 42 A A H > S+ 0 0 5 -6,-0.2 4,-1.7 2,-0.2 -1,-0.1 0.977 112.5 30.4 -74.1 -79.1 8.3 3.7 -1.8 43 43 A I H > S+ 0 0 78 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.886 123.6 53.7 -46.6 -45.0 11.1 1.5 -3.3 44 44 A A H X S+ 0 0 11 -4,-2.0 4,-1.8 1,-0.2 -1,-0.2 0.982 99.7 56.8 -54.3 -68.1 10.9 -0.6 -0.1 45 45 A E H X S+ 0 0 0 -4,-1.3 4,-1.1 -5,-0.3 24,-0.3 0.823 110.1 50.4 -32.7 -45.1 7.2 -1.3 -0.2 46 46 A G H < S+ 0 0 7 -4,-1.7 -1,-0.2 1,-0.2 10,-0.2 0.993 109.1 45.1 -57.8 -74.4 7.8 -2.8 -3.6 47 47 A Q H < S+ 0 0 121 -4,-1.9 -1,-0.2 1,-0.1 -2,-0.2 0.622 110.6 65.6 -46.3 -14.6 10.7 -5.1 -2.7 48 48 A V H < S- 0 0 46 -4,-1.8 2,-0.2 -3,-0.3 22,-0.2 0.937 113.5 -66.0 -74.9 -88.2 8.7 -6.1 0.3 49 49 A K E < -B 69 0A 104 20,-1.7 20,-1.6 -4,-1.1 2,-0.3 -0.813 43.4-169.8-172.8 128.9 5.5 -7.9 -0.9 50 50 A V E > -BC 68 53A 6 3,-3.4 3,-2.3 -2,-0.2 2,-1.6 -0.922 45.9 -88.3-124.3 149.5 2.4 -7.0 -2.9 51 51 A D T 3 S- 0 0 74 16,-2.8 3,-0.1 -2,-0.3 17,-0.0 -0.306 120.2 -6.8 -55.7 85.9 -0.8 -8.9 -3.5 52 52 A G T 3 S+ 0 0 89 -2,-1.6 2,-0.4 1,-0.2 -1,-0.3 0.329 125.3 85.0 106.8 -6.1 0.4 -10.7 -6.6 53 53 A A B < +C 50 0A 32 -3,-2.3 -3,-3.4 2,-0.1 -1,-0.2 -0.994 39.8 175.5-133.8 135.4 3.7 -8.9 -7.0 54 54 A V + 0 0 111 -2,-0.4 2,-0.1 -5,-0.2 -8,-0.1 -0.206 56.5 96.2-125.4 38.1 7.1 -9.6 -5.3 55 55 A E - 0 0 118 -9,-0.1 -2,-0.1 2,-0.0 -5,-0.0 -0.056 66.7-130.5-106.9-151.4 9.1 -6.9 -7.2 56 56 A T + 0 0 63 -10,-0.2 -9,-0.1 -9,-0.2 -10,-0.1 -0.153 40.6 152.2-167.0 57.3 10.3 -3.3 -6.4 57 57 A R - 0 0 159 2,-0.1 -11,-0.2 1,-0.1 -34,-0.1 -0.290 53.2-114.4 -86.3 175.3 9.5 -1.0 -9.3 58 58 A K S S+ 0 0 140 1,-0.1 -34,-0.4 -2,-0.1 2,-0.3 0.932 100.7 27.9 -75.2 -47.5 8.9 2.8 -9.2 59 59 A R S S- 0 0 166 -37,-0.2 2,-0.4 -36,-0.1 -37,-0.2 -0.833 73.9-148.3-115.2 153.1 5.3 2.5 -10.4 60 60 A C - 0 0 31 -39,-0.5 2,-1.1 -2,-0.3 -39,-0.6 -0.973 9.4-145.8-125.7 137.2 2.8 -0.3 -10.0 61 61 A K + 0 0 127 -2,-0.4 2,-0.3 -41,-0.1 -41,-0.1 -0.662 52.4 129.0-100.0 77.6 0.0 -1.4 -12.3 62 62 A I + 0 0 36 -2,-1.1 -41,-0.6 -41,-0.4 2,-0.3 -0.983 23.7 160.4-133.9 144.5 -2.6 -2.6 -9.8 63 63 A V + 0 0 56 -2,-0.3 16,-0.1 -43,-0.2 2,-0.1 -0.914 38.7 33.7-150.3 175.6 -6.3 -1.9 -9.2 64 64 A A S S- 0 0 40 -2,-0.3 2,-1.7 14,-0.2 13,-0.0 -0.403 113.2 -8.5 74.4-150.4 -9.5 -3.2 -7.6 65 65 A G S S+ 0 0 50 14,-0.3 2,-0.3 13,-0.2 13,-0.3 -0.564 92.1 137.5 -84.9 77.7 -9.4 -5.1 -4.3 66 66 A Q E - D 0 77A 60 -2,-1.7 11,-3.6 11,-0.7 2,-0.3 -0.837 41.2-137.1-122.1 158.7 -5.7 -5.6 -3.9 67 67 A T E - D 0 76A 34 -2,-0.3 -16,-2.8 9,-0.3 2,-0.3 -0.841 6.7-155.2-117.2 154.6 -3.4 -5.4 -0.9 68 68 A V E -BD 50 75A 8 7,-3.0 7,-2.1 -2,-0.3 2,-0.4 -0.959 8.9-163.6-127.4 143.3 0.1 -3.9 -0.4 69 69 A S E +BD 49 74A 27 -20,-1.6 -20,-1.7 -2,-0.3 2,-0.4 -0.988 13.0 168.7-136.7 132.8 2.7 -4.9 2.2 70 70 A F E > - D 0 73A 32 3,-1.8 3,-3.4 -2,-0.4 2,-1.0 -0.973 65.6 -57.4-141.9 122.8 5.9 -3.1 3.5 71 71 A A T 3 S- 0 0 89 -2,-0.4 3,-0.0 1,-0.3 -2,-0.0 -0.186 124.7 -20.2 46.7 -87.0 7.9 -4.2 6.6 72 72 A G T 3 S+ 0 0 62 -2,-1.0 2,-1.0 1,-0.0 -1,-0.3 0.425 114.8 99.3-126.7 -6.1 5.1 -3.9 9.1 73 73 A H E < + D 0 70A 94 -3,-3.4 -3,-1.8 2,-0.0 2,-0.5 -0.756 47.4 173.3 -90.6 103.6 2.6 -1.7 7.3 74 74 A S E + D 0 69A 77 -2,-1.0 2,-0.3 -5,-0.2 -5,-0.2 -0.944 5.7 157.0-114.6 125.6 -0.1 -3.9 5.7 75 75 A V E - D 0 68A 10 -7,-2.1 -7,-3.0 -2,-0.5 2,-0.3 -0.988 27.5-137.9-145.6 153.6 -3.1 -2.4 4.0 76 76 A Q E -aD 12 67A 93 -65,-2.0 -63,-3.4 -2,-0.3 2,-0.3 -0.761 12.6-152.1-112.3 158.3 -5.7 -3.3 1.4 77 77 A V E -aD 13 66A 4 -11,-3.6 -11,-0.7 -2,-0.3 2,-0.3 -0.935 3.8-156.5-129.2 152.2 -7.2 -1.3 -1.5 78 78 A V E a 14 0A 78 -65,-2.5 -63,-1.4 -2,-0.3 -62,-0.6 -0.958 360.0 360.0-130.9 149.0 -10.6 -1.5 -3.3 79 79 A A 0 0 78 -2,-0.3 -14,-0.3 -64,-0.2 -62,-0.2 -0.976 360.0 360.0-161.4 360.0 -11.8 -0.3 -6.8