==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-MAY-03 1PA4 . COMPND 2 MOLECULE: PROBABLE RIBOSOME-BINDING FACTOR A; . SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA PNEUMONIAE; . AUTHOR S.M.RUBIN,J.G.PELTON,H.YOKOTA,R.KIM,D.E.WEMMER,BERKELEY . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7268.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 15.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 34.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A K 0 0 216 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 169.5 -16.2 3.8 -7.8 2 7 A E > + 0 0 111 4,-0.0 4,-2.4 3,-0.0 3,-0.2 -0.051 360.0 150.2-168.5 -75.8 -12.6 5.1 -8.1 3 8 A R H >> S- 0 0 220 1,-0.2 4,-1.5 2,-0.2 3,-0.5 0.086 83.4 -31.2 49.1-168.8 -12.1 8.9 -7.7 4 9 A L H 3> S+ 0 0 89 1,-0.2 4,-2.4 2,-0.2 3,-0.4 0.859 137.5 68.7 -42.7 -42.8 -8.8 10.1 -6.3 5 10 A E H >> S+ 0 0 66 1,-0.3 4,-2.3 2,-0.3 3,-0.8 0.924 99.1 44.6 -40.8 -67.9 -8.8 6.9 -4.3 6 11 A N H < S+ 0 0 11 -4,-2.4 2,-1.1 2,-0.2 3,-0.6 0.773 89.0 94.2 -38.6 -30.2 5.9 -1.2 -8.2 17 22 A I T 3< S- 0 0 90 -4,-1.8 3,-0.1 1,-0.3 -1,-0.1 -0.570 114.3 -10.5 -71.6 100.2 6.5 -0.9 -11.9 18 23 A H T 34 S+ 0 0 183 -2,-1.1 -1,-0.3 1,-0.4 2,-0.2 0.297 131.7 84.8 91.0 -7.6 10.3 -1.0 -12.1 19 24 A E << + 0 0 78 -4,-1.0 -1,-0.4 -3,-0.6 45,-0.1 -0.584 50.1 67.5-116.7 179.6 10.4 -0.7 -8.3 20 25 A I S S- 0 0 9 -2,-0.2 6,-0.1 -3,-0.1 -2,-0.1 0.959 90.7 -97.8 70.3 88.9 10.1 -3.0 -5.3 21 26 A Y S S+ 0 0 192 39,-0.1 42,-0.1 1,-0.1 -2,-0.1 -0.052 103.5 5.2 -37.8 122.1 13.2 -5.2 -5.3 22 27 A N S S- 0 0 134 2,-0.1 3,-0.2 1,-0.1 -1,-0.1 0.949 106.8 -91.5 59.4 94.3 12.2 -8.5 -7.0 23 28 A E S S+ 0 0 108 1,-0.2 -3,-0.1 2,-0.1 -2,-0.1 -0.030 81.0 123.6 -36.0 121.5 8.7 -8.0 -8.2 24 29 A T >> + 0 0 22 -4,-0.1 3,-3.2 -8,-0.1 4,-0.5 0.326 62.5 51.8-146.5 -67.8 6.4 -9.2 -5.4 25 30 A V H >> S+ 0 0 7 1,-0.3 3,-0.6 32,-0.2 4,-0.5 0.706 92.6 83.7 -54.3 -18.9 3.9 -6.8 -4.1 26 31 A K H 34 S+ 0 0 103 1,-0.3 -1,-0.3 2,-0.1 -3,-0.1 0.676 91.8 48.5 -58.8 -16.0 3.0 -6.5 -7.8 27 32 A T H <4 S+ 0 0 37 -3,-3.2 -1,-0.3 26,-0.1 -2,-0.2 0.730 92.5 82.8 -93.9 -28.7 1.0 -9.6 -7.0 28 33 A G H << - 0 0 0 -3,-0.6 -2,-0.1 -4,-0.5 23,-0.1 0.889 61.9-177.8 -37.2 -92.0 -0.7 -8.1 -3.9 29 34 A H < - 0 0 148 -4,-0.5 -3,-0.1 17,-0.1 -2,-0.0 0.925 23.0-131.8 82.3 86.0 -3.5 -6.1 -5.4 30 35 A V - 0 0 38 16,-0.2 14,-0.1 1,-0.1 17,-0.0 -0.224 19.6-170.7 -64.2 156.8 -5.4 -4.3 -2.7 31 36 A T S S+ 0 0 99 15,-0.0 -1,-0.1 0, 0.0 13,-0.0 0.214 83.5 12.5-132.4 8.0 -9.2 -4.5 -2.6 32 37 A H + 0 0 97 11,-0.0 3,-0.2 2,-0.0 12,-0.1 0.351 66.1 175.1-145.5 -64.4 -9.9 -1.9 0.1 33 38 A V - 0 0 7 10,-0.2 2,-0.4 1,-0.1 11,-0.3 0.907 31.6-137.4 40.2 90.7 -6.9 0.2 1.0 34 39 A K E -A 43 0A 110 9,-1.6 9,-2.1 1,-0.0 2,-0.7 -0.640 8.2-137.0 -80.0 128.7 -8.5 2.6 3.4 35 40 A L E -A 42 0A 28 -2,-0.4 2,-0.8 7,-0.2 7,-0.2 -0.790 12.3-149.3 -90.6 114.1 -7.3 6.2 2.9 36 41 A S E >>S-A 41 0A 52 5,-3.4 2,-2.2 -2,-0.7 4,-1.4 -0.755 73.5 -33.3 -87.4 109.0 -6.6 7.9 6.2 37 42 A D T 45S- 0 0 145 -2,-0.8 -1,-0.1 1,-0.2 -2,-0.1 -0.492 117.2 -57.9 82.1 -69.3 -7.4 11.6 5.9 38 43 A D T 45S- 0 0 82 -2,-2.2 -1,-0.2 3,-0.1 -2,-0.1 0.106 120.1 -10.1-169.8 -53.3 -6.3 11.7 2.3 39 44 A L T 45S+ 0 0 34 -3,-0.3 44,-1.1 42,-0.3 -2,-0.1 0.097 106.4 97.1-149.9 18.9 -2.7 10.6 1.9 40 45 A L T <5S+ 0 0 47 -4,-1.4 2,-0.4 1,-0.3 41,-0.2 0.974 95.4 8.2 -75.6 -60.5 -1.6 10.4 5.5 41 46 A H E < -A 36 0A 70 -5,-1.3 -5,-3.4 41,-0.1 2,-0.4 -0.949 59.8-163.3-126.5 145.9 -2.1 6.7 6.1 42 47 A V E -A 35 0A 3 -2,-0.4 43,-2.0 41,-0.3 2,-1.8 -0.865 6.1-160.4-132.3 97.4 -3.0 3.9 3.6 43 48 A T E -Ab 34 85A 37 -9,-2.1 -9,-1.6 -2,-0.4 2,-0.8 -0.582 14.8-168.4 -79.3 83.9 -4.2 0.7 5.2 44 49 A V E - b 0 86A 6 41,-2.1 43,-2.6 -2,-1.8 -2,-0.1 -0.668 11.8-166.9 -79.0 111.2 -3.6 -1.6 2.3 45 50 A Y - 0 0 38 -2,-0.8 -1,-0.2 41,-0.1 41,-0.0 0.784 28.9-150.0 -67.1 -28.4 -5.4 -4.9 3.1 46 51 A L - 0 0 2 1,-0.1 -16,-0.2 -3,-0.1 -17,-0.1 0.574 17.5-161.9 63.2 137.6 -3.5 -6.5 0.3 47 52 A D + 0 0 75 -20,-0.0 -1,-0.1 7,-0.0 -2,-0.0 -0.499 21.1 161.9-153.0 73.5 -5.0 -9.4 -1.5 48 53 A C - 0 0 8 -2,-0.0 -20,-0.1 0, 0.0 -23,-0.0 0.371 68.4 -41.6 -71.1-148.7 -2.4 -11.4 -3.4 49 54 A Y S S- 0 0 165 1,-0.2 -21,-0.0 2,-0.0 -20,-0.0 0.933 117.6 -47.3 -43.7 -64.7 -3.0 -15.0 -4.7 50 55 A N S S- 0 0 135 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 0.031 88.8 -74.7-167.5 35.0 -4.8 -16.0 -1.5 51 56 A R S S+ 0 0 129 -23,-0.1 4,-0.5 1,-0.1 -2,-0.0 0.433 111.9 107.7 78.4 -0.5 -2.6 -14.9 1.3 52 57 A E S S+ 0 0 116 1,-0.2 -1,-0.1 2,-0.1 4,-0.0 0.593 89.7 31.2 -81.8 -12.6 -0.3 -17.7 0.4 53 58 A Q S >> S+ 0 0 49 2,-0.1 4,-2.4 3,-0.0 3,-1.9 0.393 90.8 99.1-120.7 -5.9 2.1 -15.2 -1.0 54 59 A I H 3>>S+ 0 0 7 1,-0.3 4,-2.5 2,-0.3 5,-0.9 0.919 75.3 64.0 -46.8 -52.7 1.3 -12.4 1.4 55 60 A D H 3>5S+ 0 0 129 -4,-0.5 4,-0.8 1,-0.3 -1,-0.3 0.821 111.3 39.2 -40.7 -37.0 4.3 -13.3 3.5 56 61 A R H <>5S+ 0 0 153 -3,-1.9 4,-1.2 2,-0.2 -1,-0.3 0.896 121.9 41.6 -81.0 -45.1 6.2 -12.3 0.4 57 62 A V H >X5S+ 0 0 0 -4,-2.4 4,-2.9 2,-0.2 3,-1.3 0.994 119.6 41.7 -64.7 -64.9 4.1 -9.4 -0.5 58 63 A V H 3X5S+ 0 0 13 -4,-2.5 4,-1.3 1,-0.3 -3,-0.2 0.895 114.9 53.6 -48.6 -45.8 3.7 -8.0 2.9 59 64 A G H 3X< S+ 0 0 99 -4,-1.3 3,-0.7 -5,-0.3 -1,-0.2 0.973 114.2 26.6 -60.5 -57.6 8.1 -3.6 4.4 63 68 A Q H >< S+ 0 0 121 -4,-0.9 3,-1.0 -3,-0.3 4,-0.3 0.746 119.3 60.0 -76.7 -25.3 11.2 -2.6 2.4 64 69 A A T 3X S+ 0 0 3 -4,-3.1 4,-2.5 1,-0.3 -1,-0.2 0.458 76.4 95.2 -80.2 -1.5 8.9 -1.1 -0.3 65 70 A K H <> S+ 0 0 98 -3,-0.7 4,-1.2 -4,-0.3 19,-0.3 0.635 81.1 58.6 -63.2 -12.6 7.7 1.2 2.4 66 71 A G H <> S+ 0 0 42 -3,-1.0 4,-1.8 2,-0.2 -1,-0.2 0.962 107.7 38.0 -80.0 -60.4 10.3 3.5 1.0 67 72 A V H > S+ 0 0 19 -4,-0.3 4,-1.4 2,-0.2 -2,-0.2 0.927 118.5 52.2 -56.6 -48.1 9.2 3.9 -2.6 68 73 A F H >X S+ 0 0 1 -4,-2.5 3,-1.3 1,-0.3 4,-1.1 0.949 108.9 47.6 -52.6 -57.4 5.5 3.8 -1.5 69 74 A S H 3X S+ 0 0 26 -4,-1.2 4,-1.1 1,-0.3 -1,-0.3 0.801 107.3 60.2 -54.9 -30.2 6.1 6.6 1.1 70 75 A R H 3X S+ 0 0 174 -4,-1.8 4,-2.0 2,-0.2 -1,-0.3 0.835 94.7 64.2 -66.7 -33.9 7.9 8.4 -1.7 71 76 A V H X< S+ 0 0 12 -4,-1.4 3,-1.2 -3,-1.3 4,-0.3 0.972 108.1 37.6 -52.4 -63.8 4.7 8.3 -3.8 72 77 A L H >X S+ 0 0 5 -4,-1.1 4,-1.7 1,-0.3 3,-1.2 0.757 111.4 64.7 -60.0 -24.4 2.7 10.5 -1.4 73 78 A A H 3< S+ 0 0 39 -4,-1.1 -1,-0.3 -5,-0.3 -2,-0.2 0.859 83.1 73.0 -66.4 -36.4 6.0 12.4 -1.0 74 79 A H T << S+ 0 0 153 -4,-2.0 -1,-0.3 -3,-1.2 -2,-0.2 0.730 114.0 27.4 -49.6 -22.0 5.8 13.4 -4.7 75 80 A N T <4 S+ 0 0 106 -3,-1.2 -2,-0.2 -4,-0.3 -1,-0.1 0.803 130.0 20.7-102.3 -79.1 3.1 15.7 -3.4 76 81 A L < - 0 0 80 -4,-1.7 5,-0.0 -37,-0.1 6,-0.0 0.119 63.4-149.2 -76.9-163.5 3.7 16.6 0.3 77 82 A Y + 0 0 204 -3,-0.1 2,-0.3 1,-0.0 -4,-0.1 -0.237 50.4 96.8-173.7 71.2 6.9 16.4 2.1 78 83 A L >> - 0 0 104 1,-0.2 4,-1.2 4,-0.0 3,-0.5 -0.950 64.7-126.3-163.8 143.5 6.7 15.7 5.8 79 84 A A G >4 S+ 0 0 66 -2,-0.3 2,-2.2 1,-0.3 3,-0.8 0.984 110.7 42.0 -53.5 -70.1 7.0 12.6 8.1 80 85 A K G 34 S+ 0 0 174 1,-0.2 -1,-0.3 3,-0.0 3,-0.1 -0.508 111.1 59.9 -80.9 72.0 3.7 13.1 9.9 81 86 A A G <4 S+ 0 0 16 -2,-2.2 2,-0.3 -3,-0.5 -42,-0.3 0.268 107.3 18.2-159.5 -44.0 1.8 14.0 6.7 82 87 A V << + 0 0 6 -4,-1.2 -1,-0.5 -3,-0.8 -42,-0.3 -0.965 64.4 125.5-141.3 155.4 2.1 11.1 4.3 83 88 A Q - 0 0 61 -44,-1.1 -41,-0.3 -2,-0.3 2,-0.3 -0.623 44.1-116.7 158.3 142.9 2.9 7.4 4.5 84 89 A I - 0 0 7 -19,-0.3 2,-0.4 -43,-0.2 -41,-0.1 -0.730 22.0-154.2 -99.0 147.8 1.5 4.0 3.6 85 90 A H E -b 43 0A 82 -43,-2.0 -41,-2.1 -2,-0.3 2,-0.3 -0.988 13.3-131.4-126.2 128.8 0.7 1.4 6.2 86 91 A F E +b 44 0A 77 -2,-0.4 2,-0.3 -43,-0.2 -41,-0.1 -0.593 30.7 175.5 -79.8 135.4 0.6 -2.4 5.5 87 92 A V + 0 0 17 -43,-2.6 -54,-0.1 -2,-0.3 -29,-0.0 -0.970 24.2 176.7-139.8 152.9 -2.4 -4.3 6.6 88 93 A K S S- 0 0 90 -2,-0.3 -1,-0.1 -41,-0.0 -43,-0.1 0.670 84.5 -21.6-119.9 -48.4 -3.7 -7.8 6.3 89 94 A D S S- 0 0 62 0, 0.0 3,-0.4 0, 0.0 -44,-0.0 -0.284 112.1 -57.8-167.7 67.5 -6.9 -8.0 8.2 90 95 A K S > S- 0 0 136 1,-0.3 2,-1.2 2,-0.2 3,-1.0 0.771 96.3 -72.8 58.7 25.9 -7.2 -5.2 10.8 91 96 A A T 3 S- 0 0 78 1,-0.3 -1,-0.3 2,-0.1 -4,-0.0 -0.237 114.2 -20.2 84.4 -46.4 -4.0 -6.6 12.2 92 97 A I T 3 S- 0 0 111 -2,-1.2 -1,-0.3 -3,-0.4 -2,-0.2 0.295 74.1-135.3-156.8 -44.6 -5.9 -9.6 13.5 93 98 A D S < S+ 0 0 104 -3,-1.0 2,-0.2 1,-0.4 -2,-0.1 0.758 83.2 47.7 79.4 27.0 -9.6 -8.6 13.8 94 99 A N S S- 0 0 139 -4,-0.2 -1,-0.4 1,-0.1 -2,-0.1 -0.746 89.6-100.4-162.1-151.9 -9.8 -10.2 17.2 95 100 A A 0 0 75 1,-0.2 -1,-0.1 -2,-0.2 -2,-0.1 0.710 360.0 360.0-115.8 -64.2 -8.0 -10.4 20.5 96 101 A M 0 0 218 -4,-0.0 -1,-0.2 0, 0.0 -4,-0.0 -0.942 360.0 360.0-177.7 360.0 -6.0 -13.6 20.7