==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 27-MAR-07 2PA1 . COMPND 2 MOLECULE: PDZ AND LIM DOMAIN PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.UPPENBERG,L.SHRESTHA,J.ELKINS,N.BURGESS-BROWN,E.SALAH,G.BU . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5225.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 27 31.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 12.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A S 0 0 109 0, 0.0 2,-0.5 0, 0.0 83,-0.2 0.000 360.0 360.0 360.0 164.1 35.7 28.1 -10.0 2 1 A M E -A 83 0A 94 81,-2.8 81,-3.1 2,-0.0 2,-0.3 -0.916 360.0-138.3-117.2 130.3 33.7 25.2 -8.7 3 2 A A E +A 82 0A 69 -2,-0.5 2,-0.3 79,-0.2 79,-0.2 -0.642 31.1 169.4 -81.9 135.5 31.1 25.1 -5.9 4 3 A L E -A 81 0A 47 77,-2.0 77,-3.4 -2,-0.3 2,-0.4 -0.988 26.7-145.9-144.1 153.7 31.3 22.1 -3.6 5 4 A T E -A 80 0A 82 -2,-0.3 2,-0.4 75,-0.2 75,-0.2 -0.984 18.1-171.4-120.6 133.5 29.8 21.0 -0.3 6 5 A V E -A 79 0A 15 73,-2.9 73,-2.9 -2,-0.4 2,-0.6 -0.991 14.1-158.8-125.2 128.4 31.8 18.9 2.1 7 6 A D E -A 78 0A 72 -2,-0.4 2,-0.6 71,-0.2 71,-0.2 -0.951 15.8-157.4-100.0 115.1 30.6 17.1 5.3 8 7 A V E -A 77 0A 0 69,-3.5 69,-2.5 -2,-0.6 31,-0.1 -0.839 17.0-127.8 -93.9 120.1 33.7 16.5 7.5 9 8 A A - 0 0 64 -2,-0.6 33,-0.1 29,-0.3 32,-0.1 -0.381 44.7 -87.3 -67.6 140.6 33.1 13.6 10.0 10 9 A G S S+ 0 0 24 -2,-0.1 2,-0.1 28,-0.0 -1,-0.1 -0.245 76.7 64.7 -94.2-175.3 33.8 14.4 13.7 11 10 A P S S- 0 0 92 0, 0.0 27,-0.1 0, 0.0 -2,-0.0 0.617 77.6 -92.4 -79.3 173.1 35.0 14.8 16.3 12 11 A A S S+ 0 0 42 61,-0.2 2,-0.1 59,-0.2 -2,-0.0 -0.339 91.5 91.5 -66.1 161.1 37.5 17.6 16.0 13 12 A P - 0 0 118 0, 0.0 25,-0.4 0, 0.0 58,-0.0 0.393 60.1-169.1 -59.4 135.5 40.5 18.2 15.5 14 13 A W - 0 0 12 2,-0.2 25,-2.6 -2,-0.1 26,-0.2 0.712 34.6-120.2 -76.5 -25.5 39.3 18.4 11.9 15 14 A G S S+ 0 0 18 1,-0.3 19,-2.3 23,-0.2 2,-0.3 0.856 72.3 92.5 87.4 38.5 42.8 18.4 10.5 16 15 A F E -B 33 0A 40 17,-0.2 2,-0.3 23,-0.1 -1,-0.3 -0.969 55.3-140.2-149.5 168.7 43.1 21.7 8.6 17 16 A R E -B 32 0A 162 15,-2.1 14,-2.3 -2,-0.3 15,-0.7 -0.931 15.0-154.4-127.4 154.2 44.1 25.3 9.0 18 17 A I E -B 30 0A 15 -2,-0.3 2,-0.3 12,-0.3 12,-0.2 -0.881 5.4-165.7-126.8 160.6 42.5 28.6 7.7 19 18 A T E +B 29 0A 66 10,-2.1 10,-2.4 -2,-0.3 2,-0.0 -0.915 47.3 28.9-134.4 160.6 43.6 32.1 6.8 20 19 A G E + 0 0 1 -2,-0.3 2,-0.2 8,-0.2 8,-0.2 -0.212 43.7 161.8 89.4-171.4 41.8 35.4 6.1 21 20 A G E > > -B 26 0A 2 5,-2.3 5,-1.8 1,-0.1 3,-1.5 -0.717 61.1 -61.7 133.4 171.2 38.5 36.9 7.2 22 21 A R G > 5S+ 0 0 136 39,-2.7 3,-1.3 1,-0.3 40,-0.2 0.878 130.9 54.6 -57.1 -42.8 36.9 40.4 7.3 23 22 A D G 3 5S+ 0 0 78 1,-0.3 -1,-0.3 38,-0.2 39,-0.1 0.551 113.3 43.5 -71.4 -7.3 39.6 41.8 9.6 24 23 A F G < 5S- 0 0 119 -3,-1.5 -1,-0.3 2,-0.2 -2,-0.2 0.306 107.8-128.8-112.0 2.0 42.3 40.6 7.1 25 24 A H T < 5S+ 0 0 175 -3,-1.3 -3,-0.2 -4,-0.3 -2,-0.1 0.811 74.3 103.0 50.1 38.1 40.2 41.9 4.1 26 25 A T E S- 0 0 22 -2,-0.6 4,-2.0 -3,-0.1 -22,-0.1 -0.973 81.7 -86.6-179.6 173.5 43.0 13.6 9.2 38 37 A K H > S+ 0 0 69 -25,-0.4 4,-1.6 -2,-0.3 -29,-0.3 0.875 120.5 52.5 -63.4 -41.8 39.2 14.1 8.8 39 38 A A H 4>S+ 0 0 0 -25,-2.6 5,-2.5 1,-0.2 4,-0.2 0.902 109.6 49.2 -64.0 -40.5 39.6 17.0 6.3 40 39 A K H >45S+ 0 0 70 -6,-0.3 3,-1.3 -26,-0.2 -1,-0.2 0.905 108.1 54.0 -65.4 -40.9 41.9 15.0 4.1 41 40 A D H 3<5S+ 0 0 133 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.846 110.2 48.2 -55.3 -37.9 39.4 12.1 4.2 42 41 A A T 3<5S- 0 0 29 -4,-1.6 -1,-0.2 -5,-0.1 -2,-0.2 0.378 117.4-114.6 -86.4 0.1 36.7 14.5 3.0 43 42 A D T < 5 + 0 0 78 -3,-1.3 2,-0.3 -4,-0.2 -3,-0.2 0.833 54.8 163.1 61.3 37.5 38.9 15.9 0.2 44 43 A L < - 0 0 5 -5,-2.5 -1,-0.2 -6,-0.1 -2,-0.0 -0.694 24.0-157.1 -73.2 137.6 39.2 19.4 1.6 45 44 A R > - 0 0 112 -2,-0.3 3,-2.1 -13,-0.0 -15,-0.3 -0.935 22.2 -97.6-126.6 145.6 42.2 21.0 -0.2 46 45 A P T 3 S+ 0 0 83 0, 0.0 -15,-0.2 0, 0.0 3,-0.1 -0.328 113.0 30.4 -51.9 136.5 44.7 23.8 0.4 47 46 A G T 3 S+ 0 0 28 -17,-3.7 37,-0.3 1,-0.3 -16,-0.1 0.162 83.3 137.1 94.5 -18.8 43.4 26.9 -1.5 48 47 A D < - 0 0 3 -3,-2.1 -18,-2.9 35,-0.1 2,-0.6 -0.403 51.7-133.9 -60.2 132.2 39.7 26.0 -1.2 49 48 A I E -CD 29 82A 43 33,-2.5 33,-2.4 -20,-0.2 2,-0.8 -0.833 11.0-134.3 -91.4 126.1 37.7 29.1 -0.3 50 49 A I E + D 0 81A 4 -22,-2.4 -22,-0.5 -2,-0.6 31,-0.2 -0.727 29.8 171.0 -82.0 111.8 35.2 28.6 2.6 51 50 A V E + 0 0 44 29,-2.7 7,-2.5 -2,-0.8 8,-0.6 0.771 67.7 10.1 -89.6 -33.7 31.9 30.3 1.4 52 51 A A E -ED 57 80A 7 28,-1.6 28,-2.2 5,-0.3 2,-0.5 -0.997 55.2-154.3-149.7 147.1 29.8 28.9 4.3 53 52 A I E > S-ED 56 79A 3 3,-2.5 3,-2.1 -2,-0.3 26,-0.2 -0.984 88.7 -21.2-122.0 114.2 30.3 27.1 7.7 54 53 A N T 3 S- 0 0 67 24,-3.3 25,-0.1 -2,-0.5 -1,-0.1 0.884 129.3 -50.1 50.4 45.0 27.2 25.1 8.7 55 54 A G T 3 S+ 0 0 70 23,-0.3 2,-0.5 1,-0.2 -1,-0.3 0.225 112.9 121.5 83.5 -13.8 25.0 27.2 6.4 56 55 A E E < S-E 53 0A 92 -3,-2.1 -3,-2.5 1,-0.1 -1,-0.2 -0.722 71.1-113.0 -89.9 123.8 26.3 30.5 7.8 57 56 A S E -E 52 0A 74 -2,-0.5 -5,-0.3 -5,-0.2 3,-0.2 -0.280 22.7-160.5 -52.8 131.9 27.9 32.8 5.2 58 57 A A S > S+ 0 0 1 -7,-2.5 3,-2.0 1,-0.2 -6,-0.2 0.685 70.7 88.7 -92.7 -20.2 31.7 33.1 5.9 59 58 A E T 3 S+ 0 0 170 -8,-0.6 -1,-0.2 1,-0.3 -33,-0.1 0.842 94.1 39.2 -45.8 -48.1 32.3 36.4 4.0 60 59 A G T 3 S+ 0 0 41 -3,-0.2 -1,-0.3 -39,-0.1 2,-0.2 0.403 92.5 115.2 -89.2 3.7 31.5 38.7 6.9 61 60 A M < - 0 0 2 -3,-2.0 -39,-2.7 -39,-0.1 -38,-0.2 -0.496 64.9-125.9 -77.8 140.0 33.2 36.6 9.6 62 61 A L > - 0 0 57 -41,-0.2 4,-2.6 -2,-0.2 5,-0.2 -0.450 31.4-109.2 -69.2 156.0 36.3 37.7 11.5 63 62 A H H > S+ 0 0 30 1,-0.2 4,-2.3 2,-0.2 5,-0.1 0.922 121.3 45.2 -51.9 -51.2 39.2 35.3 11.3 64 63 A A H > S+ 0 0 56 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.804 111.0 56.0 -65.6 -32.3 38.8 34.3 15.0 65 64 A E H > S+ 0 0 64 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.915 108.8 44.9 -64.2 -49.4 35.0 34.0 14.4 66 65 A A H X S+ 0 0 0 -4,-2.6 4,-2.3 2,-0.2 -2,-0.2 0.913 114.3 50.6 -60.7 -44.1 35.5 31.5 11.6 67 66 A Q H X S+ 0 0 60 -4,-2.3 4,-3.3 -5,-0.2 -2,-0.2 0.950 111.9 46.3 -58.5 -52.0 38.1 29.6 13.6 68 67 A S H X S+ 0 0 39 -4,-2.6 4,-2.7 1,-0.2 -1,-0.2 0.896 111.2 51.8 -59.8 -44.3 35.8 29.3 16.7 69 68 A K H < S+ 0 0 66 -4,-2.4 4,-0.3 2,-0.2 -1,-0.2 0.898 115.0 42.9 -62.1 -41.2 32.8 28.3 14.6 70 69 A I H >< S+ 0 0 12 -4,-2.3 3,-1.3 2,-0.2 -2,-0.2 0.952 114.1 50.3 -65.1 -51.6 34.9 25.5 13.0 71 70 A R H 3< S+ 0 0 156 -4,-3.3 -2,-0.2 1,-0.3 -59,-0.2 0.882 119.9 36.8 -54.7 -41.3 36.5 24.4 16.3 72 71 A Q T 3< S+ 0 0 153 -4,-2.7 -1,-0.3 -5,-0.2 -2,-0.2 0.320 88.7 135.6 -99.2 7.5 33.1 24.2 18.0 73 72 A S < - 0 0 13 -3,-1.3 -61,-0.2 -4,-0.3 4,-0.1 -0.156 56.8-115.4 -55.7 144.2 31.1 22.8 15.1 74 73 A P - 0 0 93 0, 0.0 4,-0.1 0, 0.0 -1,-0.1 -0.256 56.3 -62.4 -61.3 166.3 28.6 20.0 15.6 75 74 A S S S+ 0 0 77 2,-0.1 -66,-0.1 1,-0.1 2,-0.1 -0.896 121.6 37.6-100.4 131.4 29.4 16.7 13.8 76 75 A P S S- 0 0 64 0, 0.0 2,-0.5 0, 0.0 -67,-0.2 0.598 84.8-142.4 -79.6 157.7 29.6 16.6 10.9 77 76 A L E -A 8 0A 0 -69,-2.5 -69,-3.5 -4,-0.1 2,-0.6 -0.752 18.2-151.0 -76.5 123.7 31.2 20.0 10.0 78 77 A R E -A 7 0A 122 -2,-0.5 -24,-3.3 -71,-0.2 2,-0.4 -0.904 16.4-178.4-105.9 119.0 29.5 21.2 6.9 79 78 A L E -AD 6 53A 0 -73,-2.9 -73,-2.9 -2,-0.6 2,-0.5 -0.949 18.1-155.9-117.3 132.9 31.5 23.5 4.6 80 79 A Q E -AD 5 52A 85 -28,-2.2 -29,-2.7 -2,-0.4 -28,-1.6 -0.934 29.3-168.5-101.4 127.2 30.4 25.1 1.3 81 80 A L E -AD 4 50A 0 -77,-3.4 -77,-2.0 -2,-0.5 2,-0.5 -0.818 30.2-149.0-121.6 155.0 33.5 25.8 -0.8 82 81 A D E -AD 3 49A 55 -33,-2.4 -33,-2.5 -2,-0.3 2,-0.6 -0.983 24.5-160.6-116.4 111.6 34.6 27.6 -3.9 83 82 A R E -A 2 0A 23 -81,-3.1 -81,-2.8 -2,-0.5 2,-0.4 -0.866 10.1-141.0 -99.7 116.9 37.4 25.7 -5.5 84 83 A I - 0 0 91 -2,-0.6 -2,-0.0 -37,-0.3 -36,-0.0 -0.634 18.9-178.8 -74.7 126.8 39.7 27.6 -7.9 85 84 A T + 0 0 99 -2,-0.4 -1,-0.1 2,-0.0 2,-0.1 0.617 48.9 98.3-101.9 -21.4 40.6 25.4 -10.8 86 85 A S 0 0 90 1,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.381 360.0 360.0 -70.9 144.9 42.8 27.8 -12.7 87 86 A L 0 0 232 -2,-0.1 -1,-0.1 0, 0.0 -3,-0.0 0.481 360.0 360.0 -82.4 360.0 46.6 27.7 -12.5