==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION INITIATION 27-MAR-96 1PFT . COMPND 2 MOLECULE: TFIIB; . SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; . AUTHOR W.ZHU,Q.ZENG,C.M.COLANGELO,L.M.LEWIS,M.F.SUMMERS,R.A.SCOTT . 50 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4868.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 30.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 14.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 215 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 125.3 -4.8 0.9 -11.0 2 2 A V - 0 0 106 0, 0.0 3,-0.5 0, 0.0 2,-0.1 -0.968 360.0 -14.7-160.6 122.8 -4.8 -1.6 -13.8 3 3 A N S S- 0 0 154 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.396 119.1 -28.0 70.1-155.5 -5.8 -5.2 -13.8 4 4 A K S S- 0 0 165 -2,-0.1 -1,-0.2 -3,-0.1 0, 0.0 0.861 76.2-144.1 -61.1 -43.5 -6.2 -7.0 -10.4 5 5 A Q + 0 0 102 -3,-0.5 2,-0.2 1,-0.2 -2,-0.1 0.982 50.1 105.9 68.1 86.8 -3.7 -4.9 -8.5 6 6 A K + 0 0 117 28,-0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.877 49.2 30.6-166.7-176.5 -1.9 -7.2 -6.1 7 7 A V S S- 0 0 70 -2,-0.2 7,-0.2 7,-0.2 8,-0.0 0.234 102.4 -46.2 59.5-163.4 1.4 -9.0 -5.4 8 8 A C > - 0 0 1 5,-0.1 4,-1.3 1,-0.1 5,-0.5 -0.830 43.9-174.0-104.6 112.4 4.7 -7.5 -6.6 9 9 A P T 4 S+ 0 0 96 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.462 83.0 58.5 -67.3 -14.7 4.6 -6.3 -10.2 10 10 A A T 4 S+ 0 0 56 3,-0.1 -2,-0.0 22,-0.1 -3,-0.0 0.899 121.4 4.4 -82.4 -74.5 8.3 -5.7 -9.8 11 11 A C T 4 S- 0 0 54 2,-0.1 3,-0.1 21,-0.1 -1,-0.0 0.393 96.6-107.5 -97.1 -6.5 10.3 -8.8 -8.9 12 12 A E S < S+ 0 0 160 -4,-1.3 2,-0.3 1,-0.2 -5,-0.1 0.996 71.3 139.8 60.2 68.7 7.6 -11.4 -9.0 13 13 A S - 0 0 14 -5,-0.5 15,-0.2 1,-0.0 -1,-0.2 -0.868 36.9-165.9-138.9 105.5 7.3 -11.8 -5.2 14 14 A A + 0 0 75 -2,-0.3 2,-1.1 -7,-0.2 -7,-0.2 0.511 63.6 98.0 -70.1 -15.7 3.8 -12.3 -4.0 15 15 A E + 0 0 146 -7,-0.1 13,-2.7 -8,-0.0 2,-0.2 -0.749 50.1 161.8 -77.2 104.8 4.8 -11.7 -0.4 16 16 A L E -A 27 0A 38 -2,-1.1 2,-0.3 11,-0.3 11,-0.2 -0.599 19.7-153.1-109.0-179.6 4.0 -8.0 0.4 17 17 A I E -A 26 0A 88 9,-2.8 9,-2.4 -2,-0.2 2,-0.2 -0.965 13.1-114.3-158.9 153.2 3.7 -6.3 3.8 18 18 A Y E -A 25 0A 119 -2,-0.3 7,-0.2 7,-0.3 0, 0.0 -0.486 9.9-157.5-100.1 159.7 2.0 -3.4 5.3 19 19 A D E >>> +A 24 0A 65 5,-2.4 4,-2.8 -2,-0.2 5,-2.5 -0.707 9.8 179.2-140.8 80.0 3.4 -0.2 6.9 20 20 A P T 345S+ 0 0 99 0, 0.0 -1,-0.1 0, 0.0 5,-0.1 0.537 79.0 65.5 -60.3 -18.7 0.9 1.4 9.3 21 21 A E T 345S+ 0 0 170 1,-0.1 -2,-0.0 3,-0.1 0, 0.0 0.924 121.9 16.1 -75.0 -37.2 3.4 4.2 10.2 22 22 A R T <45S- 0 0 167 -3,-0.6 16,-0.2 2,-0.1 -1,-0.1 0.607 106.1-113.5-102.8 -24.4 3.3 5.6 6.6 23 23 A G T <5S+ 0 0 8 -4,-2.8 15,-0.9 1,-0.2 2,-0.2 0.854 72.1 143.5 85.3 36.0 0.1 3.9 5.5 24 24 A E E < -A 19 0A 22 -5,-2.5 -5,-2.4 12,-0.2 2,-0.4 -0.702 47.2-152.7-108.7 165.9 2.3 1.9 3.0 25 25 A I E +A 18 0A 35 10,-2.0 9,-2.5 -7,-0.2 10,-0.4 -0.952 25.9 179.4-140.8 116.0 2.4 -1.6 1.6 26 26 A V E -AB 17 33A 17 -9,-2.4 -9,-2.8 -2,-0.4 7,-0.3 -0.665 32.5 -92.6-109.2 170.8 5.8 -2.8 0.4 27 27 A C E -A 16 0A 5 5,-2.3 -11,-0.3 -11,-0.2 4,-0.1 -0.484 19.3-147.7 -72.4 151.0 7.4 -5.9 -1.1 28 28 A A S S+ 0 0 50 -13,-2.7 -12,-0.1 -15,-0.2 -1,-0.1 -0.004 95.5 35.7 -99.7 14.2 8.8 -8.5 1.3 29 29 A K S S+ 0 0 152 -16,-0.1 -13,-0.1 3,-0.1 -15,-0.0 0.395 125.2 23.0-128.0 -69.1 11.5 -9.2 -1.3 30 30 A C S S- 0 0 67 2,-0.1 3,-0.1 -17,-0.1 -2,-0.1 0.465 96.0-118.1 -88.9 -16.0 12.8 -6.4 -3.4 31 31 A G + 0 0 50 1,-0.3 2,-0.5 -4,-0.1 -3,-0.1 0.520 61.7 151.9 100.7 -11.0 11.9 -3.6 -0.9 32 32 A Y - 0 0 126 -6,-0.1 -5,-2.3 1,-0.1 -1,-0.3 -0.608 39.6-136.1 -66.9 126.9 9.6 -2.0 -3.4 33 33 A V B -B 26 0A 29 -2,-0.5 -7,-0.3 -7,-0.3 3,-0.1 -0.205 11.8-164.6 -61.1 168.3 6.6 -0.0 -2.1 34 34 A I - 0 0 45 -9,-2.5 2,-0.3 1,-0.6 -8,-0.1 0.687 68.5 -14.2-118.3 -75.9 3.2 -0.5 -3.7 35 35 A E - 0 0 86 -10,-0.4 -10,-2.0 1,-0.0 -1,-0.6 -0.766 51.5-175.0-125.1 159.7 1.1 2.4 -2.5 36 36 A E + 0 0 87 -2,-0.3 -12,-0.2 -12,-0.2 -1,-0.0 0.009 69.5 66.8-151.5 48.7 1.8 4.9 0.4 37 37 A N + 0 0 96 -14,-0.2 2,-2.7 3,-0.0 -14,-0.1 -0.360 54.3 173.6-158.9 56.9 -1.3 7.1 0.7 38 38 A I + 0 0 87 -15,-0.9 2,-0.2 -16,-0.2 -14,-0.0 -0.457 54.1 67.2 -75.9 65.3 -4.0 4.8 1.9 39 39 A I + 0 0 87 -2,-2.7 0, 0.0 2,-0.0 0, 0.0 -0.829 42.6 178.3-171.9 153.0 -6.6 7.5 2.5 40 40 A D + 0 0 149 -2,-0.2 -1,-0.0 0, 0.0 -2,-0.0 -0.306 60.2 83.4-162.1 74.5 -8.7 10.1 0.8 41 41 A M - 0 0 167 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.522 65.7-151.4-130.3 -55.6 -11.0 12.1 3.1 42 42 A G + 0 0 43 2,-0.1 3,-0.2 3,-0.0 -3,-0.0 0.962 19.5 176.2 80.2 67.7 -8.8 14.9 4.5 43 43 A P S S- 0 0 118 0, 0.0 2,-0.2 0, 0.0 0, 0.0 1.000 78.1 -23.1 -58.3 -64.5 -10.1 15.9 8.0 44 44 A E S S+ 0 0 150 4,-0.0 3,-0.1 1,-0.0 -2,-0.1 -0.728 113.2 87.6-157.3 78.1 -7.5 18.4 8.9 45 45 A W S S+ 0 0 175 1,-0.5 2,-0.4 -2,-0.2 3,-0.0 0.368 80.3 51.1-151.3 -40.6 -4.2 17.9 7.0 46 46 A R S S+ 0 0 191 1,-0.0 -1,-0.5 2,-0.0 0, 0.0 -0.904 103.5 13.4-109.7 148.5 -4.5 19.8 3.8 47 47 A A - 0 0 88 -2,-0.4 2,-0.3 -3,-0.1 -2,-0.2 0.489 67.6-148.2 61.6 132.1 -5.6 23.5 3.5 48 48 A F + 0 0 151 -4,-0.1 2,-0.2 -3,-0.0 -1,-0.1 -0.958 22.8 158.6-131.0 148.3 -5.6 25.7 6.6 49 49 A D 0 0 137 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.676 360.0 360.0-168.2 128.6 -7.8 28.6 7.5 50 50 A A 0 0 173 -2,-0.2 -2,-0.0 0, 0.0 0, 0.0 0.397 360.0 360.0 61.7 360.0 -8.9 30.4 10.7