==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 02-JUN-03 1PJE . COMPND 2 MOLECULE: VPU PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR S.H.PARK,A.A.MRSE,A.A.NEVZOROV,M.F.MESLEH,M.OBLATT-MONTAL, . 17 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1015.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 88.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 76.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 8 A I > 0 0 103 0, 0.0 4,-2.9 0, 0.0 5,-0.3 0.000 360.0 360.0 360.0 -35.7 -3.8 10.3 -1.5 2 9 A V H > + 0 0 66 3,-0.2 4,-2.9 2,-0.2 5,-0.3 0.931 360.0 44.3 -64.1 -48.4 -0.5 10.0 0.4 3 10 A A H > S+ 0 0 63 2,-0.2 4,-3.6 3,-0.2 5,-0.4 0.967 120.8 39.0 -60.5 -57.0 -2.1 8.0 3.2 4 11 A L H >>S+ 0 0 52 2,-0.2 4,-4.9 3,-0.2 5,-0.6 0.963 119.4 46.5 -58.1 -57.0 -4.0 5.7 0.9 5 12 A V H X5S+ 0 0 50 -4,-2.9 4,-2.6 3,-0.2 5,-0.3 0.922 118.1 43.4 -51.3 -50.9 -1.2 5.4 -1.6 6 13 A V H X5S+ 0 0 51 -4,-2.9 4,-2.9 -5,-0.3 -2,-0.2 0.966 126.9 30.8 -60.0 -56.9 1.3 4.8 1.1 7 14 A A H X5S+ 0 0 50 -4,-3.6 4,-2.9 -5,-0.3 5,-0.2 0.961 123.0 48.2 -67.0 -54.4 -0.8 2.4 3.1 8 15 A I H X5S+ 0 0 51 -4,-4.9 4,-2.7 -5,-0.4 -3,-0.2 0.881 117.3 44.5 -53.4 -42.3 -2.7 1.0 0.1 9 16 A I H XS+ 0 0 43 -4,-2.9 4,-4.6 2,-0.2 5,-0.5 0.963 115.4 44.2 -67.0 -55.0 -0.4 -3.3 1.6 12 19 A I H X5S+ 0 0 50 -4,-2.7 4,-2.3 -5,-0.2 -2,-0.2 0.926 120.5 41.7 -55.5 -49.6 -0.6 -4.2 -2.0 13 20 A V H X5S+ 0 0 54 -4,-4.0 4,-2.5 2,-0.2 -2,-0.2 0.931 123.9 38.1 -64.1 -48.4 3.2 -4.5 -2.3 14 21 A V H <5S+ 0 0 53 -4,-2.8 -2,-0.2 -5,-0.4 -3,-0.2 0.971 122.1 41.9 -67.0 -57.0 3.5 -6.3 1.0 15 22 A W H <5S+ 0 0 73 -4,-4.6 -3,-0.2 -5,-0.3 -2,-0.2 0.853 117.2 50.7 -58.6 -37.0 0.3 -8.4 0.6 16 23 A S H << 0 0 64 -4,-2.3 -1,-0.2 -5,-0.5 -2,-0.2 0.923 360.0 360.0 -67.1 -46.8 1.2 -9.0 -3.0 17 24 A I < 0 0 103 -4,-2.5 -2,-0.2 -5,-0.2 -1,-0.2 0.882 360.0 360.0 -58.2 360.0 4.7 -10.1 -2.2