==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 16-APR-07 2PJV . COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR Y LI,L.K.TAMM . 24 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1994.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 13 54.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 95 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 123.1 -9.0 4.3 -1.4 2 2 A V + 0 0 137 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.471 360.0 8.7-139.8 -72.3 -12.0 1.9 -1.0 3 3 A G S >> S- 0 0 50 3,-0.1 3,-1.3 4,-0.0 4,-1.2 0.620 137.3 -6.2 -83.4-112.2 -11.7 -1.6 -2.5 4 4 A I H 3> S+ 0 0 132 1,-0.3 4,-2.3 2,-0.2 3,-0.3 0.840 134.1 61.0 -58.0 -34.1 -8.3 -2.8 -4.0 5 5 A G H 3> S+ 0 0 34 1,-0.2 4,-2.6 2,-0.2 5,-0.3 0.813 99.0 55.5 -65.4 -32.8 -7.0 0.8 -3.4 6 6 A A H <>>S+ 0 0 38 -3,-1.3 4,-1.4 2,-0.2 5,-0.6 0.841 110.1 46.1 -68.6 -32.5 -7.6 0.3 0.4 7 7 A L H <>S+ 0 0 91 -4,-1.2 5,-3.3 -3,-0.3 6,-0.5 0.885 112.7 52.5 -68.3 -39.3 -5.5 -2.9 0.2 8 8 A F H <5S+ 0 0 141 -4,-2.3 5,-0.3 1,-0.2 -2,-0.2 0.934 122.2 27.3 -66.2 -49.5 -2.9 -0.9 -1.8 9 9 A L H <5S+ 0 0 121 -4,-2.6 -1,-0.2 3,-0.2 -2,-0.2 0.824 138.9 28.8 -72.4 -36.7 -2.5 2.0 0.6 10 10 A G T X5S+ 0 0 31 -4,-1.4 4,-2.7 -5,-0.3 -3,-0.3 0.956 124.8 30.6 -99.7 -71.3 -3.5 -0.2 3.6 11 11 A F H >4 S+ 0 0 16 -6,-0.5 3,-1.5 -5,-0.3 10,-0.3 0.863 104.9 54.1 -68.5 -31.3 1.3 -0.2 3.1 14 14 A A H 3< S+ 0 0 85 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.883 108.2 50.5 -63.2 -37.8 1.2 -2.1 6.4 15 15 A A T 3< S+ 0 0 68 -4,-1.3 2,-1.7 -5,-0.2 3,-0.4 0.222 77.5 118.1 -79.2 15.2 3.7 -4.5 4.7 16 16 A G < + 0 0 6 -3,-1.5 5,-0.2 1,-0.2 -1,-0.2 -0.159 25.1 137.3 -75.4 42.0 5.7 -1.3 3.8 17 17 A S + 0 0 117 -2,-1.7 2,-0.3 3,-0.1 -1,-0.2 0.589 53.7 77.0 -69.4 -13.2 8.6 -2.7 5.9 18 18 A T S S- 0 0 86 -3,-0.4 3,-0.4 1,-0.1 5,-0.2 -0.792 89.2-125.0 -90.2 144.0 11.0 -1.6 3.1 19 19 A V S S+ 0 0 130 -2,-0.3 2,-1.3 1,-0.3 5,-0.3 0.781 107.1 79.4 -43.9 -32.5 12.1 2.1 2.7 20 20 A G S S+ 0 0 70 3,-0.1 2,-0.3 2,-0.0 -1,-0.3 -0.141 90.2 64.0 -76.7 39.6 10.7 1.4 -0.9 21 21 A A S > S- 0 0 32 -2,-1.3 3,-2.3 -3,-0.4 -8,-0.1 -0.912 103.9 -81.9-151.9 177.0 7.1 1.9 0.4 22 22 A A T 3 S+ 0 0 90 1,-0.3 -9,-0.1 -2,-0.3 -3,-0.1 0.715 124.3 56.8 -61.4 -28.1 4.7 4.5 1.9 23 23 A S T 3 0 0 96 -10,-0.3 -1,-0.3 -5,-0.2 -4,-0.1 0.440 360.0 360.0 -77.5 -9.6 6.1 3.9 5.5 24 24 A G < 0 0 74 -3,-2.3 -5,-0.1 -5,-0.3 -6,-0.0 -0.423 360.0 360.0 -67.9 360.0 9.7 4.7 4.2