==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 18-APR-07 2PKO . COMPND 2 MOLECULE: UBIQUITIN-RELATED MODIFIER 1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR E.Y.LEE,M.W.LAKE,H.SCHINDELIN . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5858.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 70.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 20.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 16.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 117 0, 0.0 2,-0.4 0, 0.0 26,-0.2 0.000 360.0 360.0 360.0 143.9 40.2 19.2 25.2 2 2 A V E -A 26 0A 0 24,-2.1 24,-3.1 26,-0.2 2,-0.5 -0.985 360.0-149.7-131.7 137.8 37.2 17.2 24.2 3 3 A N E +A 25 0A 78 -2,-0.4 84,-2.6 22,-0.2 85,-0.3 -0.937 27.1 167.3-108.5 122.3 36.1 13.9 25.7 4 4 A V E -A 24 0A 7 20,-2.5 20,-2.6 -2,-0.5 2,-0.5 -0.875 30.5-128.0-132.7 164.7 34.2 11.6 23.3 5 5 A K E -Ab 23 89A 75 83,-2.5 85,-2.7 -2,-0.3 2,-0.4 -0.964 19.8-163.3-115.9 131.0 33.1 8.0 23.2 6 6 A V E -Ab 22 90A 0 16,-3.1 16,-3.0 -2,-0.5 2,-0.4 -0.950 0.9-163.1-113.6 140.3 33.9 5.7 20.3 7 7 A E E -Ab 21 91A 48 83,-2.3 85,-2.6 -2,-0.4 2,-0.6 -0.971 5.8-159.7-122.1 132.0 32.2 2.4 19.6 8 8 A F E + b 0 92A 1 12,-2.8 5,-0.4 -2,-0.4 3,-0.2 -0.947 27.8 168.4-114.9 111.2 33.5 -0.4 17.4 9 9 A L E > + b 0 93A 35 83,-3.3 85,-2.2 -2,-0.6 3,-1.3 -0.623 42.5 46.1-120.7 172.5 30.7 -2.6 16.2 10 10 A G T 3 S- 0 0 59 83,-0.3 -1,-0.1 1,-0.2 83,-0.1 0.604 132.6 -49.6 70.8 12.7 30.0 -5.4 13.7 11 11 A G T > S+ 0 0 45 -3,-0.2 3,-1.8 84,-0.0 -1,-0.2 0.188 110.8 117.3 109.1 -11.4 33.2 -7.3 14.6 12 12 A L G X + 0 0 4 -3,-1.3 3,-1.9 1,-0.3 4,-0.3 0.757 58.1 76.6 -61.4 -28.6 35.5 -4.2 14.3 13 13 A D G > >S+ 0 0 25 -5,-0.4 5,-2.5 1,-0.3 3,-1.1 0.632 73.6 83.4 -59.6 -15.1 36.4 -4.4 18.0 14 14 A A G < 5S+ 0 0 54 -3,-1.8 3,-0.4 1,-0.2 -1,-0.3 0.751 94.7 42.5 -58.3 -29.4 38.7 -7.4 17.0 15 15 A I G < 5S+ 0 0 15 -3,-1.9 32,-0.6 1,-0.2 33,-0.3 0.448 110.6 59.1 -95.4 -2.5 41.4 -4.8 16.0 16 16 A F T X 5S- 0 0 6 -3,-1.1 3,-1.3 -4,-0.3 -1,-0.2 -0.351 131.7 -79.6-120.4 44.5 40.8 -2.6 19.1 17 17 A G T 3 5S- 0 0 63 -3,-0.4 -3,-0.2 1,-0.3 -2,-0.1 0.705 73.9 -76.0 70.9 24.2 41.5 -5.2 21.8 18 18 A K T 3 -E 83 0B 30 -2,-0.5 4,-2.1 50,-0.2 50,-0.2 -0.484 32.6-112.4 -95.5 163.8 37.4 17.2 13.9 34 34 A V H > S+ 0 0 0 48,-1.9 4,-2.8 45,-0.3 5,-0.2 0.854 121.2 61.0 -58.5 -33.2 36.4 13.7 13.3 35 35 A G H > S+ 0 0 10 45,-2.5 4,-2.1 47,-0.2 -1,-0.2 0.920 104.2 47.5 -56.1 -46.0 39.4 13.6 10.9 36 36 A D H > S+ 0 0 35 44,-0.3 4,-2.2 2,-0.2 -2,-0.2 0.896 111.2 51.4 -63.0 -43.3 41.6 14.4 13.9 37 37 A L H X S+ 0 0 0 -4,-2.1 4,-2.7 2,-0.2 -2,-0.2 0.926 109.7 48.9 -57.4 -47.5 39.9 11.7 16.0 38 38 A I H X S+ 0 0 2 -4,-2.8 4,-2.6 1,-0.2 -2,-0.2 0.912 109.8 52.3 -61.6 -42.8 40.5 9.1 13.2 39 39 A D H X S+ 0 0 78 -4,-2.1 4,-2.1 1,-0.2 -1,-0.2 0.896 111.6 47.7 -56.4 -44.8 44.1 10.1 13.0 40 40 A H H X S+ 0 0 61 -4,-2.2 4,-1.6 2,-0.2 5,-0.3 0.890 110.6 50.2 -63.2 -47.2 44.4 9.6 16.7 41 41 A I H X>S+ 0 0 0 -4,-2.7 4,-2.3 1,-0.2 5,-0.6 0.920 112.6 47.9 -58.6 -45.1 42.7 6.2 16.6 42 42 A V H <5S+ 0 0 39 -4,-2.6 4,-0.4 1,-0.2 -2,-0.2 0.905 117.6 38.6 -66.1 -41.5 45.0 5.0 13.8 43 43 A S H <5S+ 0 0 94 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.668 131.6 23.0 -88.7 -14.3 48.3 6.1 15.3 44 44 A T H <5S+ 0 0 75 -4,-1.6 -3,-0.2 -5,-0.2 -2,-0.2 0.569 122.4 40.7-124.6 -15.9 47.5 5.2 19.0 45 45 A M T <5S+ 0 0 32 -4,-2.3 2,-0.8 -5,-0.3 -3,-0.2 0.477 87.5 84.3-120.1 -5.5 44.8 2.6 19.3 46 46 A I < - 0 0 15 -5,-0.6 -30,-0.1 -4,-0.4 -1,-0.1 -0.876 57.5-171.0 -98.8 103.4 45.4 -0.0 16.6 47 47 A N S S+ 0 0 140 -2,-0.8 -1,-0.1 -32,-0.6 -31,-0.1 0.627 70.9 55.5 -80.0 -14.6 48.0 -2.3 18.2 48 48 A N S > S- 0 0 88 -33,-0.3 3,-2.3 1,-0.1 4,-0.3 -0.956 73.2-152.1-114.6 111.7 48.9 -4.4 15.2 49 49 A P G > S+ 0 0 106 0, 0.0 3,-1.5 0, 0.0 4,-0.3 0.759 93.8 64.1 -46.5 -33.1 50.0 -2.2 12.2 50 50 A N G 3 S+ 0 0 128 1,-0.3 3,-0.4 2,-0.1 4,-0.1 0.712 94.3 62.9 -71.1 -17.6 48.8 -4.8 9.7 51 51 A D G X> S+ 0 0 43 -3,-2.3 3,-1.4 1,-0.2 4,-0.8 0.573 77.6 86.4 -79.3 -9.5 45.2 -4.2 11.0 52 52 A V H X> S+ 0 0 39 -3,-1.5 4,-2.8 -4,-0.3 3,-0.9 0.883 81.3 61.0 -61.7 -40.2 45.2 -0.5 9.9 53 53 A S H 34 S+ 0 0 67 -3,-0.4 -1,-0.3 -4,-0.3 -2,-0.1 0.626 96.4 61.6 -58.9 -21.4 44.0 -1.4 6.3 54 54 A I H <4 S+ 0 0 69 -3,-1.4 -1,-0.2 -4,-0.1 -2,-0.2 0.869 116.4 29.7 -69.7 -37.0 40.9 -3.0 7.8 55 55 A F H << S+ 0 0 0 -3,-0.9 7,-2.3 -4,-0.8 2,-0.4 0.837 122.0 46.8 -91.2 -38.8 39.8 0.4 9.2 56 56 A I B < +F 61 0C 28 -4,-2.8 2,-0.3 5,-0.3 5,-0.2 -0.889 44.4 168.8-118.3 140.3 41.4 2.8 6.7 57 57 A E S S- 0 0 93 3,-3.3 -4,-0.0 -2,-0.4 -3,-0.0 -0.882 80.2 -6.5-144.9 114.7 41.5 3.1 2.9 58 58 A D S S- 0 0 137 -2,-0.3 3,-0.1 1,-0.2 -1,-0.0 0.904 125.7 -55.7 75.5 49.7 42.8 6.4 1.4 59 59 A D S S+ 0 0 122 1,-0.2 2,-0.3 -20,-0.0 -1,-0.2 0.945 126.6 88.7 46.7 50.7 43.2 8.5 4.6 60 60 A S S S- 0 0 41 -22,-0.1 -3,-3.3 3,-0.0 -1,-0.2 -0.959 92.6 -76.5-169.5 155.8 39.5 7.7 5.1 61 61 A I B -F 56 0C 10 -2,-0.3 -5,-0.3 -5,-0.2 -6,-0.1 -0.430 57.7-106.3 -67.5 131.2 37.2 5.0 6.7 62 62 A R > - 0 0 105 -7,-2.3 3,-2.1 -2,-0.2 -1,-0.1 -0.313 39.1-103.6 -59.2 126.0 37.1 1.8 4.5 63 63 A P T 3 S+ 0 0 87 0, 0.0 36,-0.3 0, 0.0 -1,-0.1 -0.237 108.9 49.7 -50.6 140.1 33.8 1.5 2.7 64 64 A G T 3 S+ 0 0 11 34,-0.4 31,-1.5 1,-0.3 2,-0.6 -0.079 87.6 100.8 112.9 -28.4 31.6 -1.1 4.4 65 65 A I E < -C 94 0A 18 -3,-2.1 2,-0.5 29,-0.2 -1,-0.3 -0.815 67.4-145.6 -89.8 123.2 32.1 0.5 7.8 66 66 A I E -C 93 0A 52 27,-3.2 27,-2.3 -2,-0.6 2,-0.5 -0.781 12.0-157.8 -89.5 125.3 29.1 2.7 8.7 67 67 A T E -C 92 0A 1 -2,-0.5 7,-3.2 25,-0.2 2,-0.4 -0.944 11.3-177.6-109.2 119.8 30.1 5.8 10.7 68 68 A L E -CD 91 73A 36 23,-2.4 23,-2.3 -2,-0.5 2,-0.6 -0.924 17.3-153.1-112.0 141.0 27.5 7.5 12.9 69 69 A I E > S-CD 90 72A 4 3,-3.5 3,-1.4 -2,-0.4 21,-0.2 -0.959 86.4 -19.6-108.8 119.8 27.9 10.7 14.9 70 70 A N T 3 S- 0 0 68 19,-3.7 -1,-0.2 -2,-0.6 20,-0.1 0.908 130.6 -49.3 43.4 51.7 25.5 10.7 17.9 71 71 A D T 3 S+ 0 0 143 18,-0.3 2,-0.4 1,-0.2 -1,-0.3 0.647 120.1 107.9 70.4 17.0 23.4 8.0 16.2 72 72 A T E < S-D 69 0A 56 -3,-1.4 -3,-3.5 5,-0.0 -1,-0.2 -0.982 80.9 -97.6-124.8 141.0 23.2 10.0 12.9 73 73 A D E > -D 68 0A 59 -2,-0.4 3,-2.5 -5,-0.3 -5,-0.3 -0.261 28.1-134.7 -59.2 128.8 25.0 9.0 9.6 74 74 A W G > >S+ 0 0 15 -7,-3.2 5,-2.3 1,-0.3 3,-2.0 0.754 101.6 69.9 -64.9 -20.0 28.2 11.0 9.3 75 75 A E G 3 5S+ 0 0 138 -8,-0.3 3,-0.4 1,-0.3 -1,-0.3 0.783 96.5 56.1 -63.7 -23.7 27.5 11.8 5.6 76 76 A L G < 5S+ 0 0 127 -3,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.374 111.7 43.4 -82.8 4.9 24.8 14.0 7.1 77 77 A E T < 5S- 0 0 77 -3,-2.0 -2,-0.2 -4,-0.1 -1,-0.2 0.302 124.4 -85.1-135.2 7.5 27.3 15.9 9.3 78 78 A G T > 5 - 0 0 40 -4,-0.4 3,-2.6 -3,-0.4 -3,-0.2 0.464 52.4-129.4 96.5 5.6 30.5 16.6 7.1 79 79 A E G > - 0 0 104 -2,-0.1 3,-2.1 -54,-0.1 -83,-0.1 -0.917 40.1 -81.1-118.6 155.6 31.8 18.5 21.1 86 86 A D T 3 S+ 0 0 103 -2,-0.3 -82,-0.2 1,-0.3 -84,-0.1 -0.219 116.6 22.2 -53.8 135.1 32.2 17.1 24.6 87 87 A G T 3 S+ 0 0 58 -84,-2.6 -1,-0.3 1,-0.3 -83,-0.2 0.320 84.9 147.9 89.5 -5.9 30.1 14.0 25.1 88 88 A D < - 0 0 13 -3,-2.1 -83,-2.5 -85,-0.3 2,-0.5 -0.250 37.0-145.5 -62.7 149.8 29.8 13.1 21.4 89 89 A I E -b 5 0A 49 -85,-0.2 -19,-3.7 2,-0.0 2,-0.5 -0.986 11.5-169.7-119.5 122.2 29.5 9.4 20.4 90 90 A I E -bC 6 69A 0 -85,-2.7 -83,-2.3 -2,-0.5 2,-0.4 -0.969 8.7-169.4-111.6 122.4 31.1 8.2 17.2 91 91 A S E -bC 7 68A 7 -23,-2.3 -23,-2.4 -2,-0.5 2,-0.4 -0.941 9.8-165.9-117.3 137.8 30.3 4.6 16.2 92 92 A F E -bC 8 67A 0 -85,-2.6 -83,-3.3 -2,-0.4 2,-0.5 -0.992 9.5-172.2-120.5 121.0 31.9 2.6 13.5 93 93 A T E -bC 9 66A 39 -27,-2.3 -27,-3.2 -2,-0.4 2,-0.3 -0.976 17.3-138.6-121.8 118.0 30.0 -0.6 12.4 94 94 A S E - C 0 65A 37 -85,-2.2 2,-0.3 -2,-0.5 -29,-0.2 -0.610 28.6-178.8 -71.7 131.5 31.6 -3.2 10.0 95 95 A T - 0 0 55 -31,-1.5 4,-0.1 -2,-0.3 -84,-0.0 -0.880 33.1-128.6-130.0 165.8 29.1 -4.5 7.4 96 96 A L S S+ 0 0 151 -2,-0.3 -1,-0.1 1,-0.1 3,-0.1 0.903 101.8 3.3 -79.2 -46.1 29.2 -7.0 4.6 97 97 A H S S+ 0 0 166 -33,-0.1 -1,-0.1 1,-0.1 -33,-0.1 0.189 90.6 111.9-134.8 14.0 27.7 -4.9 1.8 98 98 A G 0 0 36 -34,-0.3 -34,-0.4 1,-0.2 -1,-0.1 0.303 360.0 360.0 -74.3 10.1 27.1 -1.4 3.2 99 99 A G 0 0 103 -36,-0.3 -35,-0.3 -35,-0.1 -1,-0.2 0.896 360.0 360.0 -43.6 360.0 29.9 0.1 1.0