==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-FEB-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 11-NOV-10 3PKN . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.XIE,G.KOZLOV,K.GEHRING . 90 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5569.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 70.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 52 57.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 544 A P 0 0 114 0, 0.0 2,-0.5 0, 0.0 54,-0.0 0.000 360.0 360.0 360.0 146.5 0.9 -7.4 21.7 2 545 A L - 0 0 7 49,-0.1 2,-0.2 17,-0.1 52,-0.1 -0.782 360.0-173.9 -88.0 127.6 1.4 -7.0 17.9 3 546 A T > - 0 0 67 -2,-0.5 4,-2.2 1,-0.1 5,-0.2 -0.711 39.6-108.4-115.3 166.7 5.0 -7.6 16.7 4 547 A A H > S+ 0 0 66 -2,-0.2 4,-2.0 1,-0.2 5,-0.1 0.891 120.5 51.8 -58.2 -41.5 6.8 -7.3 13.3 5 548 A S H > S+ 0 0 99 2,-0.2 4,-1.1 1,-0.2 -1,-0.2 0.898 109.1 49.1 -65.5 -42.0 6.9 -11.1 13.1 6 549 A M H > S+ 0 0 74 1,-0.2 4,-0.9 2,-0.2 3,-0.4 0.909 111.2 49.7 -61.9 -44.7 3.2 -11.4 13.7 7 550 A L H < S+ 0 0 8 -4,-2.2 3,-0.4 1,-0.2 -1,-0.2 0.854 109.2 51.9 -62.7 -39.0 2.4 -8.8 11.1 8 551 A A H < S+ 0 0 73 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.710 102.2 60.8 -71.2 -21.7 4.6 -10.5 8.5 9 552 A S H < S+ 0 0 101 -4,-1.1 -1,-0.2 -3,-0.4 -2,-0.2 0.764 92.9 84.6 -73.6 -27.8 2.8 -13.8 9.2 10 553 A A S < S- 0 0 12 -4,-0.9 5,-0.1 -3,-0.4 -3,-0.0 -0.380 99.0 -91.9 -72.4 151.6 -0.5 -12.2 8.0 11 554 A P >> - 0 0 61 0, 0.0 3,-2.7 0, 0.0 4,-0.5 -0.445 39.9-121.5 -58.7 135.6 -1.5 -11.9 4.3 12 555 A P G >4 S+ 0 0 98 0, 0.0 3,-1.2 0, 0.0 4,-0.4 0.839 112.0 60.6 -55.4 -33.8 -0.1 -8.6 3.1 13 556 A Q G 34 S+ 0 0 140 1,-0.2 4,-0.1 2,-0.1 -3,-0.0 0.450 106.6 48.4 -72.0 0.6 -3.6 -7.4 2.1 14 557 A E G <> S+ 0 0 85 -3,-2.7 4,-1.9 -7,-0.1 3,-0.3 0.441 82.9 93.8-112.0 -8.8 -4.6 -7.8 5.8 15 558 A Q H S+ 0 0 69 -4,-0.4 4,-2.6 1,-0.2 -1,-0.2 0.857 110.7 50.7 -64.5 -36.7 -3.4 -2.5 7.8 17 560 A Q H > S+ 0 0 90 -3,-0.3 4,-2.3 2,-0.2 -1,-0.2 0.859 105.8 55.3 -70.2 -35.4 -6.5 -4.1 9.4 18 561 A M H X S+ 0 0 54 -4,-1.9 4,-0.6 2,-0.2 -2,-0.2 0.896 112.8 43.3 -59.4 -42.6 -4.4 -5.9 11.9 19 562 A L H >X S+ 0 0 0 -4,-1.8 4,-2.5 2,-0.2 3,-0.9 0.913 112.6 51.9 -65.7 -45.5 -2.9 -2.6 12.9 20 563 A G H 3X S+ 0 0 0 -4,-2.6 4,-2.5 1,-0.3 -2,-0.2 0.857 103.5 59.2 -63.5 -35.0 -6.3 -0.8 12.9 21 564 A E H 3< S+ 0 0 56 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.772 114.6 35.4 -63.9 -29.2 -7.8 -3.5 15.2 22 565 A R H X S+ 0 0 0 -4,-2.5 4,-2.2 1,-0.1 3,-0.6 0.895 98.2 66.6 -68.3 -45.7 -4.9 1.1 17.3 24 567 A F H 3X S+ 0 0 28 -4,-2.5 4,-3.2 1,-0.2 5,-0.2 0.872 95.6 51.2 -50.4 -51.9 -8.7 1.8 17.4 25 568 A P H 3> S+ 0 0 60 0, 0.0 4,-1.4 0, 0.0 -1,-0.2 0.866 114.2 46.4 -58.6 -35.0 -9.4 1.0 21.2 26 569 A L H > S+ 0 0 66 1,-0.2 4,-2.3 2,-0.1 3,-0.9 0.406 81.3 110.5 -98.9 3.6 -13.9 10.8 16.2 35 578 A A H 3X S+ 0 0 2 -4,-1.6 4,-2.9 1,-0.3 5,-0.2 0.811 76.0 57.0 -46.7 -41.5 -11.7 7.7 16.8 36 579 A G H 3> S+ 0 0 12 -3,-0.3 52,-2.6 2,-0.2 4,-1.7 0.897 110.3 42.6 -61.8 -42.7 -12.9 6.1 13.5 37 580 A K H <> S+ 0 0 46 -3,-0.9 4,-1.8 50,-0.2 -2,-0.2 0.939 115.2 49.5 -68.7 -47.2 -11.7 9.1 11.4 38 581 A I H X S+ 0 0 0 -4,-2.3 4,-2.4 2,-0.2 -2,-0.2 0.909 109.9 51.0 -59.4 -44.4 -8.4 9.5 13.3 39 582 A T H X S+ 0 0 0 -4,-2.9 4,-2.0 -5,-0.2 -1,-0.2 0.919 108.2 53.3 -59.0 -43.6 -7.6 5.7 13.0 40 583 A G H < S+ 0 0 7 -4,-1.7 4,-0.3 -5,-0.2 46,-0.3 0.872 109.8 48.9 -56.0 -39.5 -8.3 6.0 9.2 41 584 A M H >< S+ 0 0 0 -4,-1.8 3,-1.0 1,-0.2 41,-0.3 0.911 112.1 46.5 -69.5 -45.4 -5.8 8.9 9.1 42 585 A L H >< S+ 0 0 0 -4,-2.4 3,-2.3 1,-0.2 -2,-0.2 0.780 96.3 72.3 -70.0 -28.1 -3.0 7.2 11.0 43 586 A L T 3< S+ 0 0 21 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.675 84.6 70.4 -64.5 -12.8 -3.3 3.9 9.0 44 587 A E T < S+ 0 0 111 -3,-1.0 -1,-0.3 -4,-0.3 -2,-0.2 0.695 81.6 96.3 -73.4 -18.8 -1.7 5.8 6.1 45 588 A I S < S- 0 0 20 -3,-2.3 2,-0.0 -4,-0.2 5,-0.0 -0.294 93.5 -85.6 -68.2 154.4 1.6 5.8 8.2 46 589 A D >> - 0 0 116 1,-0.1 4,-2.1 4,-0.0 3,-0.5 -0.341 36.8-119.3 -64.2 144.2 4.2 3.1 7.5 47 590 A N H 3> S+ 0 0 38 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.826 109.5 56.8 -57.8 -38.9 3.6 -0.2 9.4 48 591 A S H 3> S+ 0 0 95 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.918 110.4 44.9 -59.6 -42.4 6.9 -0.1 11.3 49 592 A E H <> S+ 0 0 79 -3,-0.5 4,-2.4 2,-0.2 -2,-0.2 0.899 111.5 53.3 -69.9 -39.0 6.1 3.3 12.8 50 593 A L H X S+ 0 0 0 -4,-2.1 4,-1.9 1,-0.2 -2,-0.2 0.889 106.9 52.1 -62.4 -39.7 2.5 2.1 13.6 51 594 A L H X S+ 0 0 25 -4,-2.5 4,-1.0 2,-0.2 -1,-0.2 0.905 110.3 49.0 -61.6 -42.4 3.9 -0.9 15.4 52 595 A H H >X S+ 0 0 113 -4,-1.8 4,-1.0 1,-0.2 3,-0.6 0.894 109.2 52.0 -62.5 -44.1 6.1 1.5 17.5 53 596 A M H 3< S+ 0 0 1 -4,-2.4 7,-0.4 1,-0.2 3,-0.3 0.841 102.7 60.5 -61.1 -36.6 3.1 3.7 18.2 54 597 A L H 3< S+ 0 0 22 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.819 114.9 33.5 -61.1 -31.6 1.2 0.7 19.5 55 598 A E H << S+ 0 0 115 -4,-1.0 -1,-0.2 -3,-0.6 -2,-0.2 0.451 112.1 64.9-106.9 -1.4 3.7 0.0 22.2 56 599 A S X - 0 0 32 -4,-1.0 4,-2.1 -3,-0.3 3,-0.5 -0.846 60.0-170.8-121.5 93.2 4.8 3.7 22.9 57 600 A P H > S+ 0 0 105 0, 0.0 4,-2.6 0, 0.0 5,-0.2 0.848 86.5 54.3 -50.0 -42.0 1.8 5.6 24.4 58 601 A E H > S+ 0 0 122 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.914 109.3 48.9 -60.3 -40.4 3.7 9.0 24.2 59 602 A S H > S+ 0 0 29 -3,-0.5 4,-1.8 2,-0.2 -1,-0.2 0.921 112.4 46.9 -65.8 -44.7 4.3 8.4 20.5 60 603 A L H X S+ 0 0 7 -4,-2.1 4,-2.7 -7,-0.4 5,-0.2 0.956 111.3 51.7 -61.2 -50.1 0.7 7.5 19.8 61 604 A R H X S+ 0 0 129 -4,-2.6 4,-2.8 1,-0.2 -1,-0.2 0.889 108.6 50.5 -54.5 -46.4 -0.7 10.5 21.7 62 605 A S H X S+ 0 0 58 -4,-2.1 4,-1.4 1,-0.2 -1,-0.2 0.874 113.1 45.4 -65.9 -36.4 1.5 13.0 19.9 63 606 A K H X S+ 0 0 43 -4,-1.8 4,-2.5 2,-0.2 -1,-0.2 0.861 112.3 51.7 -72.3 -36.7 0.4 11.7 16.4 64 607 A V H X S+ 0 0 0 -4,-2.7 4,-2.7 2,-0.2 -2,-0.2 0.939 107.0 53.4 -63.4 -45.2 -3.2 11.6 17.5 65 608 A D H X S+ 0 0 79 -4,-2.8 4,-1.8 -5,-0.2 -1,-0.2 0.874 109.9 48.8 -54.6 -40.4 -2.9 15.2 18.6 66 609 A E H X S+ 0 0 98 -4,-1.4 4,-2.3 2,-0.2 -2,-0.2 0.952 109.9 50.7 -64.5 -51.6 -1.6 16.1 15.2 67 610 A A H X S+ 0 0 0 -4,-2.5 4,-2.6 1,-0.2 -2,-0.2 0.901 110.2 50.2 -50.8 -46.8 -4.4 14.2 13.4 68 611 A V H X S+ 0 0 20 -4,-2.7 4,-2.3 1,-0.2 -1,-0.2 0.911 110.5 48.7 -62.2 -43.5 -7.1 16.1 15.5 69 612 A A H X S+ 0 0 58 -4,-1.8 4,-2.0 -5,-0.2 -1,-0.2 0.873 112.7 48.7 -65.8 -35.4 -5.6 19.5 14.7 70 613 A V H X S+ 0 0 49 -4,-2.3 4,-2.2 2,-0.2 -2,-0.2 0.901 111.3 49.6 -70.6 -43.1 -5.5 18.6 11.0 71 614 A L H X S+ 0 0 12 -4,-2.6 4,-1.9 2,-0.2 -2,-0.2 0.895 112.2 48.0 -59.4 -42.8 -9.1 17.4 11.0 72 615 A Q H X S+ 0 0 112 -4,-2.3 4,-1.7 2,-0.2 -2,-0.2 0.884 111.2 50.0 -68.2 -38.3 -10.2 20.6 12.8 73 616 A A H X S+ 0 0 61 -4,-2.0 4,-1.3 1,-0.2 -2,-0.2 0.863 109.8 51.4 -65.8 -37.8 -8.3 22.8 10.3 74 617 A H H X S+ 0 0 38 -4,-2.2 4,-2.4 2,-0.2 5,-0.2 0.874 104.4 57.3 -66.3 -38.7 -9.9 20.9 7.5 75 618 A Q H X S+ 0 0 110 -4,-1.9 4,-1.8 1,-0.2 -2,-0.2 0.918 109.2 45.9 -53.7 -48.9 -13.4 21.5 9.0 76 619 A A H < S+ 0 0 76 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.794 112.6 51.4 -63.4 -31.3 -12.7 25.3 8.9 77 620 A K H < S+ 0 0 157 -4,-1.3 -2,-0.2 2,-0.2 -1,-0.2 0.812 110.3 47.1 -78.9 -32.6 -11.4 24.9 5.3 78 621 A E H < 0 0 136 -4,-2.4 -2,-0.2 1,-0.1 -1,-0.2 0.803 360.0 360.0 -76.5 -31.0 -14.5 23.0 4.1 79 622 A A < 0 0 119 -4,-1.8 -2,-0.2 -5,-0.2 -3,-0.1 0.996 360.0 360.0 -57.4 360.0 -16.7 25.7 5.8 80 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 81 15 B L 0 0 82 0, 0.0 -39,-0.1 0, 0.0 -40,-0.1 0.000 360.0 360.0 360.0 131.2 -2.0 13.5 7.5 82 16 B N > - 0 0 50 -41,-0.3 3,-2.0 1,-0.1 -38,-0.1 -0.828 360.0-166.7-104.2 105.8 -5.0 13.3 5.2 83 17 B P T 3 S+ 0 0 19 0, 0.0 -1,-0.1 0, 0.0 -42,-0.1 0.593 88.2 65.9 -65.9 -9.1 -8.3 14.5 6.7 84 18 B N T 3 S+ 0 0 110 -43,-0.1 3,-0.1 -44,-0.1 -2,-0.0 0.373 75.0 133.5 -89.3 3.5 -10.1 12.8 3.8 85 19 B A < - 0 0 4 -3,-2.0 -44,-0.2 1,-0.1 2,-0.1 -0.137 66.5 -95.2 -55.1 148.0 -9.0 9.3 5.0 86 20 B K - 0 0 174 -46,-0.3 2,-0.2 1,-0.1 -1,-0.1 -0.428 44.4-107.8 -63.3 134.6 -11.6 6.5 5.1 87 21 B V - 0 0 71 -2,-0.1 -50,-0.2 -3,-0.1 2,-0.2 -0.466 30.3-125.6 -69.2 128.3 -13.3 6.0 8.5 88 22 B W - 0 0 35 -52,-2.6 2,-0.5 -2,-0.2 -49,-0.1 -0.518 18.2-161.4 -71.8 135.8 -12.3 2.8 10.4 89 23 B Q - 0 0 156 -2,-0.2 2,-0.2 -53,-0.0 -65,-0.0 -0.990 18.3-137.1-119.3 124.5 -15.0 0.4 11.6 90 24 B E 0 0 62 -2,-0.5 -69,-0.1 -66,-0.0 -54,-0.0 -0.466 360.0 360.0 -87.5 149.5 -13.9 -1.9 14.4 91 25 B I 0 0 168 -2,-0.2 -1,-0.0 -70,-0.0 -2,-0.0 -0.942 360.0 360.0-112.7 360.0 -14.6 -5.7 14.8