==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 20-APR-07 2PM4 . COMPND 2 MOLECULE: NEUTROPHIL DEFENSIN 1 (HNP-1) (HP-1) (HP1) (DEFEN . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.LUBKOWSKI,M.PAZGIER,W.LU . 60 2 6 6 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4423.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 51.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 40.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 174 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 167.7 -10.5 3.2 25.4 2 2 A a + 0 0 58 28,-0.2 2,-0.3 11,-0.0 28,-0.2 -0.760 360.0 179.8-103.6 149.1 -12.7 6.1 24.4 3 3 A Y E -A 29 0A 59 26,-2.7 26,-3.4 -2,-0.3 2,-0.5 -0.970 30.0-118.0-142.8 158.2 -12.1 8.4 21.4 4 4 A b E +A 28 0A 23 -2,-0.3 38,-2.6 38,-0.3 2,-0.3 -0.879 41.2 179.4-100.8 128.5 -13.8 11.3 19.6 5 5 A R E -A 27 0A 13 22,-2.5 22,-2.8 -2,-0.5 14,-0.1 -0.950 20.9-120.5-133.1 147.8 -14.9 10.5 16.1 6 6 A I S S+ 0 0 64 -2,-0.3 20,-0.1 20,-0.2 -2,-0.0 -0.998 90.6 5.6-128.5 135.7 -16.6 12.2 13.2 7 7 A P S S- 0 0 113 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.984 124.4 -39.1 -81.3 -23.0 -19.1 11.3 11.9 8 8 A A - 0 0 52 19,-0.1 -2,-0.1 -4,-0.1 21,-0.1 -0.989 63.3 -73.2-161.3 162.6 -20.0 8.6 14.3 9 9 A c - 0 0 29 -2,-0.3 2,-0.1 -4,-0.1 3,-0.1 -0.387 55.7-131.3 -60.1 146.6 -19.0 5.7 16.4 10 10 A I > - 0 0 65 1,-0.2 3,-2.2 4,-0.1 -1,-0.1 -0.332 41.5 -55.2 -98.7 178.1 -18.1 2.7 14.2 11 11 A A T 3 S+ 0 0 101 1,-0.3 -1,-0.2 -2,-0.1 3,-0.1 -0.289 128.4 22.6 -51.7 127.4 -19.2 -0.9 14.5 12 12 A G T 3 S+ 0 0 88 1,-0.3 2,-0.4 -3,-0.1 -1,-0.3 0.468 105.8 98.2 94.5 -1.9 -18.3 -2.3 17.9 13 13 A E < - 0 0 38 -3,-2.2 2,-0.4 16,-0.0 -1,-0.3 -0.947 58.9-150.4-118.6 149.0 -18.2 1.1 19.5 14 14 A K - 0 0 133 16,-2.5 16,-2.5 -2,-0.4 2,-0.5 -0.902 19.4-118.8-121.4 139.9 -21.0 2.8 21.5 15 15 A K E +B 29 0A 126 -2,-0.4 14,-0.2 14,-0.2 3,-0.1 -0.653 33.0 168.3 -82.7 127.5 -21.6 6.5 21.8 16 16 A Y E - 0 0 146 12,-3.4 2,-0.3 -2,-0.5 13,-0.2 0.412 62.8 -50.1-114.9 -3.1 -21.4 7.9 25.3 17 17 A G E -B 28 0A 27 11,-0.9 11,-2.8 2,-0.0 2,-0.3 -0.967 65.4 -76.7 165.2-150.8 -21.4 11.6 24.7 18 18 A T E -B 27 0A 79 9,-0.3 2,-0.3 -2,-0.3 9,-0.2 -0.894 22.3-144.3-141.6 161.8 -19.7 14.2 22.5 19 19 A b E -B 26 0A 19 7,-2.0 7,-2.9 -2,-0.3 2,-0.5 -0.946 6.6-148.5-123.9 152.6 -16.5 16.2 22.2 20 20 A I E +B 25 0A 144 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.996 37.7 147.0-115.8 118.2 -15.8 19.8 21.0 21 21 A Y E > +B 24 0A 92 3,-1.7 3,-1.5 -2,-0.5 -2,-0.1 -0.972 64.0 5.0-154.7 135.2 -12.4 20.0 19.4 22 22 A Q T 3 S- 0 0 128 -2,-0.3 3,-0.1 1,-0.2 -1,-0.0 0.850 127.4 -61.7 54.8 36.2 -11.1 22.1 16.5 23 23 A G T 3 S+ 0 0 80 1,-0.2 2,-0.3 0, 0.0 -1,-0.2 0.694 115.4 100.9 70.9 14.2 -14.5 24.0 16.4 24 24 A K E < S- B 0 21A 102 -3,-1.5 -3,-1.7 0, 0.0 2,-0.4 -0.943 72.9-113.7-132.2 160.3 -16.5 20.9 15.5 25 25 A L E - B 0 20A 115 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.770 34.2-174.7 -93.3 130.8 -18.8 18.4 17.3 26 26 A W E - B 0 19A 22 -7,-2.9 -7,-2.0 -2,-0.4 2,-0.4 -0.844 27.6-112.9-120.8 156.4 -17.5 14.8 17.6 27 27 A A E -AB 5 18A 9 -22,-2.8 -22,-2.5 -2,-0.3 2,-0.8 -0.743 25.4-136.2 -82.8 134.8 -19.1 11.6 19.0 28 28 A F E -AB 4 17A 74 -11,-2.8 -12,-3.4 -2,-0.4 -11,-0.9 -0.866 32.7-173.4 -93.3 113.7 -17.4 10.3 22.2 29 29 A c E AB 3 15A 0 -26,-3.4 -26,-2.7 -2,-0.8 -14,-0.2 -0.905 360.0 360.0-119.7 135.3 -17.2 6.6 21.5 30 30 A a 0 0 63 -16,-2.5 -16,-2.5 -2,-0.4 -28,-0.2 -0.827 360.0 360.0-127.1 360.0 -16.0 3.7 23.8 31 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 32 1 B D 0 0 167 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-153.3 1.7 4.8 19.4 33 2 B d - 0 0 52 28,-0.2 2,-0.3 11,-0.0 28,-0.2 -0.859 360.0-165.7-114.0 157.8 0.3 4.6 15.9 34 3 B Y E -C 60 0B 97 26,-2.5 26,-3.2 -2,-0.3 2,-0.4 -0.993 22.1-127.2-140.8 143.1 -2.9 2.8 14.8 35 4 B e E -C 59 0B 53 -2,-0.3 2,-0.4 24,-0.2 24,-0.2 -0.803 42.0-179.5 -87.7 131.0 -4.5 1.7 11.5 36 5 B R E -C 58 0B 22 22,-2.6 22,-2.9 -2,-0.4 14,-0.1 -0.991 21.5-126.0-140.0 144.4 -8.1 3.0 11.3 37 6 B I S S+ 0 0 60 -2,-0.4 20,-0.1 20,-0.2 -27,-0.1 -0.987 88.8 2.4-126.4 137.6 -11.1 3.1 9.1 38 7 B P S S- 0 0 88 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.987 126.0 -30.7 -84.8 -12.1 -12.6 5.5 8.1 39 8 B A - 0 0 42 19,-0.1 -2,-0.1 -4,-0.1 21,-0.1 -0.951 66.6 -76.5-160.3 164.4 -10.3 8.2 9.6 40 9 B f - 0 0 26 -2,-0.3 2,-0.1 -4,-0.1 3,-0.1 -0.304 51.7-115.3 -66.8 157.1 -8.0 9.1 12.5 41 10 B I > - 0 0 17 1,-0.2 3,-2.4 -36,-0.1 -36,-0.2 -0.387 49.0 -63.3 -86.9 170.7 -9.6 10.0 15.8 42 11 B A T 3 S+ 0 0 21 -38,-2.6 -38,-0.3 1,-0.3 -1,-0.2 -0.367 127.3 24.8 -54.7 121.5 -9.4 13.5 17.5 43 12 B G T 3 S+ 0 0 52 1,-0.4 2,-0.3 -2,-0.1 -1,-0.3 0.223 104.9 98.7 109.0 -12.2 -5.8 14.3 18.3 44 13 B E < - 0 0 29 -3,-2.4 -1,-0.4 16,-0.0 2,-0.3 -0.763 54.4-156.2-102.0 154.0 -4.4 12.0 15.6 45 14 B K - 0 0 144 16,-2.5 16,-2.5 -2,-0.3 2,-0.4 -0.917 25.6-110.2-121.7 156.9 -3.1 12.9 12.2 46 15 B K E +D 60 0B 130 -2,-0.3 14,-0.2 14,-0.2 3,-0.1 -0.696 36.3 168.0 -87.6 130.6 -2.8 10.6 9.2 47 16 B Y E - 0 0 151 12,-3.2 2,-0.3 -2,-0.4 13,-0.1 0.347 63.5 -40.8-122.0 0.0 0.8 9.8 8.2 48 17 B G E -D 59 0B 29 11,-0.8 11,-2.6 2,-0.0 2,-0.3 -0.972 68.3 -80.7 169.2-154.1 0.4 7.0 5.7 49 18 B T E -D 58 0B 79 -2,-0.3 2,-0.4 9,-0.3 9,-0.2 -0.916 18.2-143.2-138.8 159.8 -1.8 3.9 5.2 50 19 B e E -D 57 0B 16 7,-2.3 7,-3.3 -2,-0.3 2,-0.5 -0.950 6.2-153.1-117.6 150.0 -2.1 0.2 6.1 51 20 B I E +D 56 0B 146 -2,-0.4 2,-0.3 5,-0.2 5,-0.2 -0.994 40.6 139.9-117.9 115.2 -3.2 -2.7 3.9 52 21 B Y E > +D 55 0B 137 3,-1.8 3,-1.7 -2,-0.5 -2,-0.1 -0.968 61.4 12.3-159.9 138.4 -4.8 -5.3 6.2 53 22 B Q T 3 S- 0 0 120 -2,-0.3 3,-0.1 1,-0.3 -1,-0.0 0.828 127.4 -65.5 53.9 38.1 -7.8 -7.6 5.9 54 23 B G T 3 S+ 0 0 83 1,-0.2 2,-0.3 0, 0.0 -1,-0.3 0.688 115.1 106.1 59.6 21.5 -8.0 -6.7 2.1 55 24 B K E < S- D 0 52B 115 -3,-1.7 -3,-1.8 -18,-0.0 2,-0.5 -0.900 72.0-119.6-127.3 156.2 -8.8 -3.1 3.0 56 25 B L E - D 0 51B 118 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.853 35.5-172.8 -91.6 132.3 -7.0 0.3 3.0 57 26 B W E - D 0 50B 44 -7,-3.3 -7,-2.3 -2,-0.5 2,-0.3 -0.882 26.7-111.5-120.4 158.7 -6.7 1.9 6.4 58 27 B A E -CD 36 49B 12 -22,-2.9 -22,-2.6 -2,-0.3 2,-0.8 -0.678 24.9-137.7 -81.1 133.3 -5.4 5.3 7.6 59 28 B F E -CD 35 48B 75 -11,-2.6 -12,-3.2 -2,-0.3 -11,-0.8 -0.885 31.1-169.5 -96.4 112.0 -2.2 5.1 9.6 60 29 B f E CD 34 46B 0 -26,-3.2 -26,-2.5 -2,-0.8 -14,-0.2 -0.856 360.0 360.0-116.0 134.6 -2.8 7.5 12.4 61 30 B d 0 0 62 -16,-2.5 -16,-2.5 -2,-0.4 -28,-0.2 -0.949 360.0 360.0-135.9 360.0 -0.4 8.9 15.0