==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 20-APR-07 2PM5 . COMPND 2 MOLECULE: NEUTROPHIL DEFENSIN 1 (HNP-1) (HP-1) (HP1) (DEFEN . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.LUBKOWSKI,M.PAZGIER,W.LU . 60 2 6 6 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4746.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 61.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 40.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 15.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 162 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 162.5 31.4 23.3 43.1 2 2 A a - 0 0 34 28,-0.2 2,-0.3 11,-0.0 28,-0.2 -0.857 360.0-167.7-117.4 156.1 32.2 24.9 39.7 3 3 A Y E -A 29 0A 107 26,-2.2 26,-2.7 -2,-0.3 2,-0.4 -0.996 26.9-118.2-143.9 145.1 32.7 28.5 38.7 4 4 A b E -A 28 0A 52 -2,-0.3 2,-0.3 24,-0.2 24,-0.2 -0.692 45.3-177.5 -77.3 135.5 33.0 30.6 35.6 5 5 A R E -A 27 0A 66 22,-1.8 22,-2.9 -2,-0.4 14,-0.1 -0.981 19.1-128.6-140.7 146.7 36.4 32.2 35.6 6 6 A I S S+ 0 0 82 -2,-0.3 20,-0.1 20,-0.2 -2,-0.0 -0.977 87.4 1.9-135.4 135.1 38.4 34.7 33.6 7 7 A P S S- 0 0 129 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.993 126.4 -26.9 -88.0 -12.3 41.2 34.3 32.6 8 8 A A - 0 0 64 19,-0.1 -2,-0.2 18,-0.0 2,-0.1 -0.941 65.8 -81.5-154.0 166.2 41.8 30.8 34.1 9 9 A c - 0 0 37 -2,-0.3 3,-0.1 -4,-0.1 6,-0.1 -0.471 50.4-109.2 -74.7 150.3 40.9 28.2 36.8 10 10 A I > - 0 0 64 1,-0.2 3,-2.8 -2,-0.1 -1,-0.1 -0.241 48.9 -68.0 -79.0 164.0 42.5 28.5 40.2 11 11 A A T 3 S+ 0 0 67 1,-0.3 22,-0.2 22,-0.0 -1,-0.2 -0.260 126.7 24.0 -48.0 128.6 45.0 26.1 41.7 12 12 A G T 3 S+ 0 0 56 1,-0.4 -1,-0.3 -3,-0.1 2,-0.2 0.100 106.0 96.7 102.1 -21.9 43.3 22.8 42.3 13 13 A E < - 0 0 19 -3,-2.8 -1,-0.4 16,-0.0 2,-0.3 -0.524 52.7-160.6 -96.2 161.4 40.6 23.3 39.6 14 14 A X - 0 0 120 16,-2.2 16,-2.5 -2,-0.2 2,-0.4 -0.931 28.4-102.9-133.8 160.4 40.5 22.1 36.0 15 15 A X E +B 29 0A 107 -2,-0.3 14,-0.3 14,-0.2 3,-0.1 -0.734 37.1 166.8 -87.2 128.8 38.3 23.4 33.1 16 16 A Y E - 0 0 156 12,-3.3 2,-0.3 -2,-0.4 13,-0.2 0.305 65.6 -36.7-118.7 2.1 35.3 21.2 32.1 17 17 A G E -B 28 0A 26 11,-1.0 11,-3.0 2,-0.0 2,-0.3 -0.961 66.8 -80.7 170.2-156.8 33.5 23.7 29.8 18 18 A T E -B 27 0A 84 -2,-0.3 2,-0.4 9,-0.3 9,-0.2 -0.939 17.1-148.6-140.7 157.6 32.6 27.3 29.2 19 19 A b E -B 26 0A 18 7,-1.7 7,-3.9 -2,-0.3 2,-0.5 -0.969 7.0-153.4-121.0 146.7 30.3 30.1 30.2 20 20 A I E +B 25 0A 144 -2,-0.4 2,-0.3 5,-0.2 5,-0.2 -0.987 35.8 145.8-117.3 122.7 29.0 32.9 28.1 21 21 A Y E > +B 24 0A 133 3,-2.0 3,-2.4 -2,-0.5 -2,-0.1 -0.984 60.6 0.7-162.5 142.9 28.1 35.8 30.2 22 22 A Q T 3 S- 0 0 132 -2,-0.3 3,-0.1 1,-0.3 -1,-0.0 0.779 127.2 -57.1 29.9 46.4 28.3 39.6 29.9 23 23 A G T 3 S+ 0 0 81 1,-0.2 2,-0.3 0, 0.0 -1,-0.3 0.505 115.7 98.5 77.6 7.0 29.7 39.3 26.3 24 24 A X E < S- B 0 21A 95 -3,-2.4 -3,-2.0 -18,-0.0 2,-0.5 -0.885 72.4-115.5-124.0 159.2 32.8 37.2 27.2 25 25 A L E - B 0 20A 117 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.794 34.6-165.2 -84.6 124.5 33.8 33.5 27.2 26 26 A W E - B 0 19A 46 -7,-3.9 -7,-1.7 -2,-0.5 2,-0.4 -0.789 21.9-117.2-110.7 155.8 34.5 32.1 30.6 27 27 A A E -AB 5 18A 14 -22,-2.9 -22,-1.8 -2,-0.3 2,-0.8 -0.724 22.6-141.1 -79.8 131.9 36.2 29.0 31.7 28 28 A F E -AB 4 17A 74 -11,-3.0 -12,-3.3 -2,-0.4 -11,-1.0 -0.863 29.5-172.0 -98.4 113.9 33.9 26.6 33.5 29 29 A c E AB 3 15A 0 -26,-2.7 -26,-2.2 -2,-0.8 -14,-0.2 -0.896 360.0 360.0-119.1 131.9 36.1 25.2 36.3 30 30 A a 0 0 64 -16,-2.5 -16,-2.2 -2,-0.4 -28,-0.2 -0.855 360.0 360.0-127.9 360.0 35.4 22.5 38.8 31 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 32 1 B D 0 0 103 0, 0.0 2,-0.3 0, 0.0 -20,-0.1 0.000 360.0 360.0 360.0-151.6 38.0 23.6 46.7 33 2 B d - 0 0 12 -22,-0.2 2,-0.4 28,-0.2 28,-0.2 -0.812 360.0-152.6-116.3 161.6 41.4 23.6 48.4 34 3 B Y E -C 60 0B 114 26,-2.2 26,-3.1 -2,-0.3 2,-0.7 -0.959 17.7-130.0-138.0 139.5 42.5 25.2 51.6 35 4 B e E +C 59 0B 61 -2,-0.4 2,-0.3 24,-0.2 24,-0.2 -0.892 44.8 176.8 -89.7 115.7 45.8 26.6 53.0 36 5 B R E -C 58 0B 65 22,-2.3 22,-3.2 -2,-0.7 14,-0.1 -0.901 24.2-126.1-126.3 148.8 46.1 25.0 56.5 37 6 B I S S+ 0 0 85 -2,-0.3 20,-0.1 20,-0.2 -2,-0.0 -0.991 89.6 2.5-127.5 133.5 48.4 24.8 59.6 38 7 B P S S- 0 0 128 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.997 125.3 -23.4 -89.6 -10.7 49.4 22.3 60.9 39 8 B A - 0 0 51 19,-0.1 -2,-0.1 -4,-0.0 21,-0.1 -0.976 62.1 -84.0-158.1 158.1 47.8 19.8 58.4 40 9 B f - 0 0 32 -2,-0.3 3,-0.1 -4,-0.1 2,-0.1 -0.419 54.7-122.4 -62.2 148.7 45.3 18.8 55.9 41 10 B I > - 0 0 101 1,-0.2 3,-2.0 4,-0.1 -1,-0.1 -0.312 47.9 -45.9 -95.8 177.5 42.1 17.6 57.6 42 11 B A T 3 S+ 0 0 100 1,-0.3 -1,-0.2 -2,-0.1 3,-0.1 -0.113 126.4 11.1 -50.5 126.9 40.2 14.3 57.4 43 12 B G T 3 S+ 0 0 89 1,-0.3 2,-0.3 -3,-0.1 -1,-0.3 0.490 106.7 104.9 87.0 3.4 39.7 13.0 53.8 44 13 B E < - 0 0 34 -3,-2.0 -1,-0.3 16,-0.0 2,-0.3 -0.755 52.3-154.5-107.9 160.8 42.1 15.6 52.2 45 14 B X - 0 0 126 16,-2.5 16,-2.0 -2,-0.3 2,-0.6 -0.899 25.4-107.7-130.5 161.3 45.7 15.2 50.8 46 15 B X E +D 60 0B 119 -2,-0.3 14,-0.2 14,-0.2 3,-0.1 -0.800 33.2 170.6 -95.2 118.6 48.5 17.8 50.5 47 16 B Y E - 0 0 161 12,-2.9 2,-0.3 -2,-0.6 13,-0.2 0.431 63.9 -49.2-106.2 -0.1 49.3 19.0 46.9 48 17 B G E -D 59 0B 23 11,-1.1 11,-2.6 2,-0.0 2,-0.3 -0.962 64.5 -70.0 167.5-144.4 51.6 21.8 47.8 49 18 B T E -D 58 0B 79 -2,-0.3 2,-0.4 9,-0.3 9,-0.2 -0.953 17.2-148.2-147.9 156.0 52.2 24.9 49.9 50 19 B e E -D 57 0B 19 7,-2.2 7,-2.8 -2,-0.3 2,-0.6 -0.988 9.0-150.8-131.1 139.1 51.2 28.5 50.6 51 20 B I E +D 56 0B 137 -2,-0.4 2,-0.4 5,-0.2 5,-0.2 -0.957 31.3 160.2-105.7 118.2 53.4 31.3 51.8 52 21 B Y E > -D 55 0B 134 3,-1.8 3,-1.5 -2,-0.6 -2,-0.1 -0.968 64.4 -20.5-148.0 127.1 51.2 33.7 53.7 53 22 B Q T 3 S- 0 0 142 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.892 125.0 -47.2 30.6 74.3 52.4 36.2 56.2 54 23 B G T 3 S+ 0 0 85 1,-0.1 2,-0.3 -3,-0.0 -1,-0.3 0.622 116.6 107.8 53.1 18.1 55.8 34.6 57.1 55 24 B X E < - D 0 52B 99 -3,-1.5 -3,-1.8 -18,-0.0 2,-0.6 -0.938 66.3-129.0-125.6 151.6 54.3 31.1 57.5 56 25 B L E - D 0 51B 129 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.873 30.3-173.2 -92.8 122.7 54.2 27.8 55.5 57 26 B W E - D 0 50B 56 -7,-2.8 -7,-2.2 -2,-0.6 2,-0.5 -0.831 25.6-115.5-114.2 149.4 50.7 26.4 55.0 58 27 B A E -CD 36 49B 13 -22,-3.2 -22,-2.3 -2,-0.3 2,-0.8 -0.754 21.6-137.0 -85.0 124.4 49.7 23.1 53.5 59 28 B F E -CD 35 48B 38 -11,-2.6 -12,-2.9 -2,-0.5 -11,-1.1 -0.768 35.4-172.9 -82.5 112.4 47.8 23.4 50.3 60 29 B f E CD 34 46B 0 -26,-3.1 -26,-2.2 -2,-0.8 -14,-0.2 -0.906 360.0 360.0-121.1 128.4 45.1 20.8 50.8 61 30 B d 0 0 61 -16,-2.0 -16,-2.5 -2,-0.4 -28,-0.2 -0.987 360.0 360.0-133.2 360.0 42.3 19.3 48.6