==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIFREEZE PROTEIN 24-APR-07 2PNE . COMPND 2 MOLECULE: 6.5 KDA GLYCINE-RICH ANTIFREEZE PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR B.L.PENTELUTE,KENT S.B.H.,Z.P.GATES,V.TERESHKO, . 81 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4004.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 50.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A a 0 0 108 0, 0.0 28,-2.9 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 163.9 11.2 -15.6 10.1 2 2 A K B -a 29 0A 86 26,-0.3 28,-0.2 52,-0.1 3,-0.1 -0.993 360.0 -99.3-157.5 147.8 11.2 -12.2 8.5 3 3 A G - 0 0 10 26,-2.7 29,-0.3 -2,-0.3 21,-0.2 -0.242 59.6 -80.1 -61.8 161.2 12.8 -8.7 8.7 4 4 A A - 0 0 63 19,-0.3 18,-2.9 27,-0.2 27,-0.2 -0.396 45.7-117.5 -64.6 138.7 10.9 -6.0 10.5 5 5 A D - 0 0 82 16,-0.2 28,-0.2 26,-0.2 2,-0.2 -0.428 33.7-104.3 -68.6 151.4 8.2 -4.2 8.5 6 6 A G - 0 0 10 26,-3.0 29,-0.2 13,-0.3 15,-0.2 -0.464 37.4 -99.3 -76.9 149.5 8.6 -0.5 7.9 7 7 A A - 0 0 71 13,-0.2 12,-3.0 -2,-0.2 27,-0.3 -0.321 40.6-112.0 -62.2 143.5 6.6 2.1 9.8 8 8 A H - 0 0 126 10,-0.2 28,-0.2 26,-0.2 10,-0.1 -0.369 33.8-105.1 -69.3 154.9 3.6 3.5 8.0 9 9 A G - 0 0 16 26,-3.2 2,-0.3 7,-0.2 29,-0.2 -0.271 38.4-100.1 -70.4 171.7 3.5 7.1 6.9 10 10 A V - 0 0 87 27,-0.2 6,-2.2 7,-0.1 2,-0.2 -0.729 28.2-118.3 -95.1 139.0 1.5 9.8 8.7 11 11 A N + 0 0 100 -2,-0.3 2,-0.3 4,-0.2 28,-0.2 -0.595 68.2 94.4 -69.7 139.0 -1.9 11.0 7.5 12 12 A G B S-b 39 0B 11 26,-1.9 28,-2.6 -2,-0.2 3,-0.4 -0.958 79.7 -27.0 171.5-157.7 -1.6 14.7 6.8 13 13 A b S S+ 0 0 92 1,-0.5 2,-0.1 -2,-0.3 32,-0.1 -0.743 140.7 8.1-126.4 85.4 -1.0 17.4 4.2 14 14 A P S S- 0 0 71 0, 0.0 -1,-0.5 0, 0.0 31,-0.2 0.490 97.4-124.3 -88.7 169.3 0.7 15.5 2.5 15 15 A G - 0 0 4 29,-2.6 -4,-0.2 -3,-0.4 32,-0.2 -0.507 37.7-123.4 -61.0 143.0 0.5 12.0 3.7 16 16 A T - 0 0 64 -6,-2.2 21,-3.1 30,-0.2 30,-0.3 -0.495 27.3 -85.5 -96.7 167.4 4.1 10.9 4.3 17 17 A A - 0 0 56 19,-0.2 31,-0.2 -2,-0.2 2,-0.2 -0.359 36.5-119.3 -70.0 142.6 6.0 8.0 2.8 18 18 A G - 0 0 7 29,-3.0 -10,-0.2 16,-0.3 32,-0.2 -0.498 38.2-108.5 -68.1 151.0 5.9 4.5 4.4 19 19 A A - 0 0 45 -12,-3.0 15,-2.8 30,-0.2 -13,-0.3 -0.520 35.6 -98.3 -81.4 150.8 9.4 3.3 5.4 20 20 A A - 0 0 62 13,-0.2 -13,-0.2 -2,-0.2 31,-0.2 -0.339 41.5-106.6 -62.0 144.9 11.2 0.5 3.5 21 21 A G - 0 0 10 29,-3.1 -16,-0.2 10,-0.3 2,-0.2 -0.356 40.6-102.9 -65.2 152.8 10.9 -3.0 5.0 22 22 A S - 0 0 56 -18,-2.9 9,-3.2 10,-0.2 30,-0.3 -0.499 37.5 -99.2 -79.4 149.0 14.1 -4.3 6.6 23 23 A V - 0 0 101 7,-0.2 2,-0.4 -2,-0.2 -19,-0.3 -0.321 41.9-106.7 -58.1 145.2 16.3 -6.8 4.9 24 24 A G - 0 0 6 29,-3.1 3,-0.2 4,-0.2 6,-0.1 -0.681 33.8-130.9 -72.6 126.1 15.8 -10.4 6.0 25 25 A G > - 0 0 33 -2,-0.4 3,-2.7 4,-0.2 30,-0.2 -0.155 57.1 -49.0 -63.0 172.4 18.7 -11.6 8.1 26 26 A P T 3 S+ 0 0 137 0, 0.0 -1,-0.2 0, 0.0 30,-0.1 -0.237 134.9 9.6 -52.7 125.2 20.2 -14.9 7.2 27 27 A G T 3 S+ 0 0 51 28,-2.3 2,-0.3 1,-0.2 29,-0.1 0.503 110.0 109.2 85.1 7.1 17.5 -17.4 6.8 28 28 A a < - 0 0 23 -3,-2.7 27,-3.0 27,-0.1 29,-0.4 -0.844 66.9-115.5-121.1 151.0 14.6 -14.8 7.0 29 29 A D B -a 2 0A 45 -28,-2.9 -26,-2.7 -2,-0.3 31,-0.2 -0.307 44.8 -89.7 -69.6 161.4 12.2 -13.3 4.5 30 30 A G - 0 0 0 29,-2.4 32,-0.2 22,-0.3 -7,-0.2 -0.477 42.5-110.6 -74.5 149.9 12.2 -9.6 3.6 31 31 A G - 0 0 0 -9,-3.2 21,-3.1 22,-0.3 -10,-0.3 -0.377 32.4-111.0 -76.6 153.9 10.2 -7.1 5.7 32 32 A H - 0 0 58 -29,-0.3 -26,-3.0 19,-0.2 -10,-0.2 -0.608 30.0-113.7 -86.9 143.1 7.2 -5.4 4.2 33 33 A G - 0 0 8 29,-3.2 -13,-0.2 16,-0.4 32,-0.2 -0.336 35.7-101.8 -70.3 156.4 7.2 -1.7 3.4 34 34 A G - 0 0 0 -15,-2.8 15,-3.1 -27,-0.3 -16,-0.3 -0.411 35.4-107.4 -73.9 150.8 4.9 0.7 5.4 35 35 A N - 0 0 69 -29,-0.2 -26,-3.2 13,-0.2 31,-0.2 -0.564 40.0-109.2 -72.8 144.1 1.7 1.9 3.9 36 36 A G - 0 0 7 29,-3.1 32,-0.2 10,-0.3 -19,-0.2 -0.326 35.8 -99.0 -70.5 156.1 1.9 5.6 2.8 37 37 A G - 0 0 1 -21,-3.1 9,-2.9 10,-0.2 2,-0.4 -0.447 36.1-114.1 -70.6 149.1 -0.1 8.2 4.8 38 38 A N - 0 0 63 7,-0.2 -26,-1.9 29,-0.2 2,-0.3 -0.701 29.5-120.0 -82.5 136.4 -3.4 9.4 3.5 39 39 A G B -b 12 0B 15 29,-3.2 -26,-0.2 -2,-0.4 3,-0.1 -0.534 20.6-124.0 -75.6 138.2 -3.6 13.0 2.3 40 40 A N > - 0 0 82 -28,-2.6 3,-2.5 -2,-0.3 30,-0.3 -0.217 62.8 -54.9 -62.8 166.3 -6.1 15.4 4.0 41 41 A P T 3 S+ 0 0 133 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 -0.219 132.8 14.3 -49.5 129.8 -8.5 17.0 1.6 42 42 A G T 3 S+ 0 0 69 1,-0.2 2,-0.3 -3,-0.1 -2,-0.1 0.435 108.6 108.3 86.9 1.4 -6.6 18.8 -1.2 43 43 A b S < S- 0 0 10 -3,-2.5 27,-2.4 -31,-0.1 -1,-0.2 -0.847 70.4-105.7-121.4 151.5 -3.3 17.1 -0.3 44 44 A A - 0 0 35 -2,-0.3 -29,-2.6 25,-0.3 2,-0.2 -0.269 32.1-123.3 -66.1 152.9 -1.1 14.4 -1.9 45 45 A G - 0 0 12 26,-2.6 -7,-0.2 22,-0.3 2,-0.2 -0.609 30.1-106.7 -88.9 156.0 -0.9 10.8 -0.5 46 46 A G - 0 0 5 -9,-2.9 21,-3.1 -30,-0.3 -10,-0.3 -0.518 31.2-108.9 -81.8 151.1 2.4 9.3 0.6 47 47 A V - 0 0 68 19,-0.2 -29,-3.0 -2,-0.2 -10,-0.2 -0.424 35.0-110.6 -72.0 149.1 4.2 6.6 -1.3 48 48 A G - 0 0 4 26,-2.8 29,-0.2 16,-0.3 -13,-0.2 -0.491 38.2-104.0 -72.3 150.0 4.3 3.1 0.1 49 49 A G - 0 0 4 -15,-3.1 15,-3.0 -30,-0.3 -16,-0.4 -0.462 35.6-107.8 -70.5 151.2 7.7 1.8 1.4 50 50 A A - 0 0 46 -32,-0.2 -29,-3.1 13,-0.2 -16,-0.2 -0.403 36.1-107.7 -71.7 153.6 9.7 -0.7 -0.7 51 51 A G - 0 0 12 26,-2.8 29,-0.3 10,-0.3 -19,-0.2 -0.456 32.3-113.2 -76.6 153.5 10.0 -4.3 0.5 52 52 A G - 0 0 6 -21,-3.1 9,-2.9 -30,-0.3 27,-0.3 -0.472 34.7-100.0 -82.3 158.1 13.2 -5.6 2.0 53 53 A A - 0 0 37 7,-0.2 -29,-3.1 26,-0.2 -22,-0.3 -0.443 37.8-104.0 -76.6 153.0 15.2 -8.3 0.3 54 54 A S - 0 0 23 26,-2.9 -25,-0.2 -31,-0.2 2,-0.1 -0.388 14.8-135.4 -69.4 149.0 15.2 -12.0 1.2 55 55 A G S S- 0 0 23 -27,-3.0 -28,-2.3 -30,-0.2 -27,-0.1 -0.332 78.6 -59.1 -96.7 48.3 18.0 -13.6 3.2 56 56 A G S S+ 0 0 76 -2,-0.1 -27,-0.1 -30,-0.1 -31,-0.0 0.586 115.8 104.7 89.4 16.1 18.1 -16.7 1.0 57 57 A T S S- 0 0 51 -29,-0.4 -28,-0.1 2,-0.2 3,-0.1 0.533 85.5-121.8-101.7 -13.8 14.4 -17.8 1.5 58 58 A G S S+ 0 0 48 1,-0.2 2,-0.6 22,-0.1 -29,-0.1 0.567 80.2 111.2 80.7 9.9 13.1 -16.7 -1.9 59 59 A V - 0 0 70 22,-0.1 -29,-2.4 21,-0.1 -4,-0.2 -0.931 46.0-174.6-124.2 103.9 10.5 -14.5 -0.1 60 60 A G - 0 0 15 -2,-0.6 -7,-0.2 19,-0.3 2,-0.1 -0.464 34.2 -88.8 -85.6 169.5 11.0 -10.7 -0.4 61 61 A G - 0 0 2 -9,-2.9 18,-2.9 -30,-0.3 -10,-0.3 -0.435 38.4-114.9 -73.6 150.8 8.9 -8.1 1.3 62 62 A R - 0 0 186 -32,-0.2 -29,-3.2 16,-0.2 -10,-0.2 -0.543 31.6-111.7 -73.3 149.3 5.7 -6.7 -0.1 63 63 A G - 0 0 20 13,-0.3 -13,-0.2 -31,-0.2 -1,-0.1 -0.504 37.6-105.2 -71.0 152.8 5.6 -3.0 -1.0 64 64 A G - 0 0 1 -15,-3.0 12,-2.9 -30,-0.3 -16,-0.3 -0.377 35.8-101.9 -70.7 157.4 3.4 -0.8 1.1 65 65 A K - 0 0 121 10,-0.2 -29,-3.1 -32,-0.2 -16,-0.2 -0.661 40.0-114.3 -75.8 137.6 0.1 0.5 -0.1 66 66 A G - 0 0 19 -2,-0.3 2,-0.3 -31,-0.2 -19,-0.2 -0.212 33.4-105.5 -63.8 158.7 0.2 4.1 -1.3 67 67 A G - 0 0 2 -21,-3.1 6,-2.9 7,-0.2 -22,-0.3 -0.601 31.4-111.6 -79.8 149.2 -1.8 6.6 0.6 68 68 A S + 0 0 64 -2,-0.3 -29,-3.2 -32,-0.2 2,-0.3 -0.373 63.3 103.6 -64.8 159.3 -5.0 8.0 -0.8 69 69 A G S S- 0 0 25 -31,-0.2 3,-0.4 -24,-0.1 -25,-0.3 -0.967 73.4 -39.3 156.5-167.3 -5.0 11.7 -1.7 70 70 A T S S+ 0 0 98 -27,-2.4 2,-0.1 1,-0.6 -2,-0.0 -0.868 139.7 9.3-130.4 91.3 -4.8 14.3 -4.5 71 71 A P S S- 0 0 98 0, 0.0 -26,-2.6 0, 0.0 -1,-0.6 0.661 106.9-126.8 -83.8 167.4 -2.9 12.8 -6.2 72 72 A K - 0 0 157 -3,-0.4 2,-0.3 -28,-0.2 -4,-0.2 -0.327 22.8-107.5 -69.1 156.6 -2.6 9.4 -4.5 73 73 A G - 0 0 11 -6,-2.9 -7,-0.2 -27,-0.3 -27,-0.2 -0.616 32.8-118.1 -76.8 144.6 0.7 7.9 -3.5 74 74 A A - 0 0 69 -2,-0.3 -26,-2.8 -29,-0.2 -7,-0.2 -0.403 33.5-101.0 -72.9 158.1 2.1 4.9 -5.5 75 75 A D - 0 0 84 -28,-0.2 -10,-0.2 -9,-0.2 2,-0.1 -0.369 41.1-102.9 -67.5 156.0 2.6 1.5 -3.9 76 76 A G - 0 0 12 -12,-2.9 -13,-0.3 -27,-0.3 -27,-0.2 -0.478 36.9-110.1 -71.2 155.6 6.1 0.6 -2.8 77 77 A A - 0 0 65 -29,-0.2 -26,-2.8 -2,-0.1 -13,-0.2 -0.638 38.7-105.1 -84.6 145.0 7.9 -1.9 -5.0 78 78 A P - 0 0 96 0, 0.0 -16,-0.2 0, 0.0 2,-0.1 -0.266 36.1-105.0 -66.7 160.8 8.5 -5.4 -3.5 79 79 A G - 0 0 9 -18,-2.9 -19,-0.3 -27,-0.3 -27,-0.2 -0.464 46.8 -78.7 -83.4 160.7 11.8 -6.5 -2.2 80 80 A A 0 0 62 -29,-0.3 -26,-2.9 -2,-0.1 -19,-0.1 -0.382 360.0 360.0 -61.1 120.5 14.1 -8.9 -4.0 81 81 A P 0 0 120 0, 0.0 -22,-0.1 0, 0.0 -1,-0.1 -0.601 360.0 360.0 -81.4 360.0 13.0 -12.5 -3.5