==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 28-APR-07 2PP6 . COMPND 2 MOLECULE: GIFSY-2 PROPHAGE ATP-BINDING SUGAR TRANSPORTER-LI . SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM LT2; . AUTHOR Y.KIM,H.LI,D.HOLZLE,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTUR . 88 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6061.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 76.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 33 37.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 23.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -2 A S > 0 0 141 0, 0.0 4,-1.8 0, 0.0 3,-0.3 0.000 360.0 360.0 360.0-131.4 11.1 33.9 4.1 2 -1 A N H > + 0 0 109 1,-0.2 4,-5.0 2,-0.2 5,-0.4 0.848 360.0 68.4 -48.9 -42.3 11.1 30.4 5.5 3 0 A A H > S+ 0 0 77 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.941 104.8 38.9 -44.3 -64.2 12.1 29.0 2.1 4 1 A X H > S+ 0 0 121 -3,-0.3 4,-2.8 1,-0.2 -1,-0.2 0.941 120.6 46.5 -54.1 -49.9 15.5 30.6 2.2 5 2 A A H X S+ 0 0 55 -4,-1.8 4,-2.1 1,-0.2 -2,-0.2 0.892 112.4 49.3 -61.4 -41.6 15.9 29.8 5.9 6 3 A D H X S+ 0 0 105 -4,-5.0 4,-1.7 2,-0.2 -1,-0.2 0.837 112.0 50.1 -66.7 -32.1 14.7 26.2 5.4 7 4 A L H X S+ 0 0 86 -4,-2.4 4,-2.3 -5,-0.4 -2,-0.2 0.965 109.4 49.9 -69.0 -51.7 17.1 25.7 2.5 8 5 A F H X S+ 0 0 93 -4,-2.8 4,-2.4 1,-0.2 -2,-0.2 0.857 109.1 53.2 -54.8 -39.4 20.0 27.1 4.5 9 6 A D H X S+ 0 0 96 -4,-2.1 4,-2.9 1,-0.2 -1,-0.2 0.926 109.4 47.4 -64.3 -45.2 19.2 24.7 7.4 10 7 A G H X S+ 0 0 4 -4,-1.7 4,-2.6 2,-0.2 5,-0.2 0.862 110.7 51.9 -64.9 -36.5 19.2 21.6 5.2 11 8 A X H X S+ 0 0 88 -4,-2.3 4,-3.1 2,-0.2 -1,-0.2 0.954 111.0 47.7 -66.8 -44.2 22.4 22.6 3.5 12 9 A K H X S+ 0 0 125 -4,-2.4 4,-2.2 1,-0.2 5,-0.3 0.943 111.8 50.5 -60.1 -46.2 24.0 23.0 6.9 13 10 A R H X S+ 0 0 155 -4,-2.9 4,-1.6 1,-0.2 -1,-0.2 0.934 115.1 42.2 -58.9 -45.1 22.6 19.7 8.0 14 11 A R H X S+ 0 0 150 -4,-2.6 4,-1.6 1,-0.2 -1,-0.2 0.873 110.5 58.2 -69.3 -36.3 23.9 17.9 4.9 15 12 A X H X S+ 0 0 121 -4,-3.1 4,-1.6 -5,-0.2 -1,-0.2 0.903 108.9 44.0 -60.3 -41.6 27.3 19.8 5.1 16 13 A D H X S+ 0 0 54 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.863 108.6 56.5 -73.2 -34.5 28.0 18.5 8.6 17 14 A A H X S+ 0 0 60 -4,-1.6 4,-1.6 -5,-0.3 -1,-0.2 0.820 108.0 49.9 -66.2 -28.3 26.9 14.9 7.8 18 15 A L H X S+ 0 0 111 -4,-1.6 4,-2.4 2,-0.2 -1,-0.2 0.885 108.8 49.8 -76.9 -41.1 29.5 14.9 5.0 19 16 A I H X>S+ 0 0 53 -4,-1.6 4,-2.9 1,-0.2 5,-0.6 0.917 112.7 48.4 -62.9 -41.7 32.3 16.2 7.1 20 17 A A H X5S+ 0 0 20 -4,-2.4 4,-1.7 1,-0.2 -1,-0.2 0.892 111.2 50.7 -64.8 -39.3 31.5 13.5 9.7 21 18 A E H <5S+ 0 0 163 -4,-1.6 -2,-0.2 -5,-0.2 -1,-0.2 0.881 117.3 39.3 -65.8 -39.3 31.4 10.9 7.0 22 19 A R H <5S+ 0 0 184 -4,-2.4 -2,-0.2 1,-0.1 -1,-0.2 0.876 136.3 12.3 -80.7 -39.8 34.7 11.9 5.6 23 20 A F H <5S+ 0 0 54 -4,-2.9 15,-0.4 -5,-0.2 -3,-0.2 0.521 91.1 125.2-117.4 -9.0 36.7 12.6 8.7 24 21 A G << - 0 0 28 -4,-1.7 2,-0.3 -5,-0.6 13,-0.2 -0.141 42.1-155.0 -56.1 146.0 34.6 11.2 11.6 25 22 A X E -A 36 0A 27 11,-2.9 11,-2.3 9,-0.0 2,-0.5 -0.882 19.8-118.3-118.2 152.9 36.1 8.7 14.0 26 23 A K E +A 35 0A 144 -2,-0.3 40,-0.4 9,-0.2 2,-0.3 -0.802 47.0 166.5 -92.3 125.8 34.2 6.2 16.1 27 24 A V E -A 34 0A 4 7,-3.0 7,-2.9 -2,-0.5 2,-0.6 -0.979 35.5-126.8-144.4 153.5 34.8 6.9 19.7 28 25 A N E -AB 33 64A 43 36,-1.8 36,-2.7 -2,-0.3 2,-0.5 -0.906 23.3-176.8-107.8 122.1 33.5 6.1 23.1 29 26 A I E > S-AB 32 63A 4 3,-3.0 3,-2.3 -2,-0.6 34,-0.2 -0.972 72.1 -27.5-119.3 118.9 32.4 8.9 25.5 30 27 A N T 3 S- 0 0 93 32,-2.5 -1,-0.1 -2,-0.5 33,-0.1 0.867 129.2 -43.4 43.4 46.7 31.2 8.0 29.0 31 28 A G T 3 S+ 0 0 62 31,-0.3 2,-0.4 1,-0.2 -1,-0.3 0.390 119.1 104.4 87.7 -6.2 30.0 4.6 27.8 32 29 A T E < -A 29 0A 57 -3,-2.3 -3,-3.0 2,-0.0 2,-0.2 -0.938 64.6-134.1-115.5 131.5 28.4 5.7 24.6 33 30 A D E +A 28 0A 82 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.575 40.5 148.6 -80.0 140.9 29.8 5.2 21.1 34 31 A C E -A 27 0A 3 -7,-2.9 -7,-3.0 -2,-0.2 2,-0.4 -0.980 44.4 -91.5-162.6 171.5 29.7 8.2 18.8 35 32 A I E +A 26 0A 53 -2,-0.3 16,-2.3 -9,-0.2 17,-1.2 -0.775 38.0 173.6-100.8 135.5 31.4 10.1 16.0 36 33 A V E -AC 25 50A 2 -11,-2.3 -11,-2.9 -2,-0.4 2,-0.4 -0.926 19.2-145.8-134.6 155.6 33.9 12.8 16.5 37 34 A V E - C 0 49A 0 12,-2.2 12,-2.2 -2,-0.3 -13,-0.1 -0.991 25.1-116.2-128.2 129.6 36.2 14.8 14.2 38 35 A E E > - C 0 48A 8 -2,-0.4 3,-1.0 -15,-0.4 4,-0.3 -0.325 21.4-128.0 -59.8 138.6 39.7 16.0 15.0 39 36 A S G >> S+ 0 0 16 8,-2.3 4,-2.9 1,-0.2 3,-1.3 0.674 102.2 78.2 -63.6 -16.5 40.0 19.7 15.1 40 37 A D G 34 S+ 0 0 119 7,-0.3 -1,-0.2 1,-0.3 8,-0.1 0.949 94.1 49.3 -55.8 -48.0 42.9 19.5 12.8 41 38 A F G <4 S+ 0 0 114 -3,-1.0 -1,-0.3 1,-0.2 -2,-0.2 0.523 122.1 31.3 -69.2 -8.5 40.5 18.9 9.9 42 39 A L T <4 0 0 38 -3,-1.3 -2,-0.2 -4,-0.3 -1,-0.2 0.703 360.0 360.0-122.3 -32.1 38.3 21.9 10.8 43 40 A A < 0 0 124 -4,-2.9 -3,-0.1 0, 0.0 -2,-0.1 0.593 360.0 360.0 -59.6 360.0 40.4 24.7 12.4 44 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 45 49 A G 0 0 72 0, 0.0 42,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 64.8 45.9 17.9 24.8 46 50 A K E - D 0 86A 75 40,-0.5 40,-3.1 39,-0.1 2,-0.4 -0.109 360.0-153.1 -55.2 149.2 43.9 16.5 21.9 47 51 A N E + D 0 85A 34 38,-0.2 -8,-2.3 2,-0.0 -7,-0.3 -0.990 20.4 160.6-131.3 131.7 40.9 18.5 20.6 48 52 A V E -CD 38 84A 2 36,-2.0 36,-3.0 -2,-0.4 2,-0.4 -0.997 29.9-134.6-149.0 152.1 37.7 17.2 18.8 49 53 A V E -CD 37 83A 0 -12,-2.2 -12,-2.2 -2,-0.3 2,-0.6 -0.909 25.9-126.8-111.6 138.3 34.2 18.2 18.0 50 54 A V E +C 36 0A 3 32,-2.4 -14,-0.2 -2,-0.4 5,-0.0 -0.713 26.9 174.8 -86.6 119.3 31.3 15.8 18.6 51 55 A F + 0 0 35 -16,-2.3 -15,-0.2 -2,-0.6 -1,-0.1 0.828 50.9 92.0 -93.3 -33.3 29.0 15.2 15.6 52 56 A S - 0 0 29 -17,-1.2 3,-0.4 1,-0.1 -18,-0.0 -0.292 63.5-149.1 -61.6 145.6 26.6 12.5 16.9 53 57 A G S S+ 0 0 84 1,-0.2 -1,-0.1 3,-0.0 -19,-0.0 0.337 82.7 79.0 -98.8 8.6 23.4 13.8 18.4 54 58 A N S S+ 0 0 106 -21,-0.1 2,-0.3 -22,-0.0 -1,-0.2 0.294 85.6 63.8-100.7 11.8 23.1 10.9 20.9 55 59 A V - 0 0 22 -3,-0.4 -25,-0.1 -5,-0.0 -5,-0.0 -0.940 54.7-160.3-133.4 154.9 25.6 12.1 23.5 56 60 A I - 0 0 119 -2,-0.3 -3,-0.0 -27,-0.1 -2,-0.0 -0.813 27.0-149.6-132.3 88.0 26.1 15.0 25.9 57 61 A P - 0 0 14 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.206 14.5-165.0 -60.8 150.2 29.8 15.1 26.8 58 62 A R > - 0 0 140 16,-0.0 3,-1.2 26,-0.0 14,-0.3 -0.962 31.8 -95.1-137.6 153.8 30.8 16.4 30.2 59 63 A R T 3 S+ 0 0 191 -2,-0.3 14,-0.2 1,-0.2 3,-0.1 -0.498 116.7 32.9 -62.8 131.2 33.9 17.6 32.0 60 64 A G T 3 S+ 0 0 56 12,-2.1 -1,-0.2 1,-0.4 13,-0.1 -0.277 86.1 130.9 115.4 -47.6 35.1 14.5 33.8 61 65 A D < - 0 0 18 -3,-1.2 11,-2.0 10,-0.1 2,-0.4 0.023 56.9-127.6 -40.4 138.8 34.0 11.9 31.2 62 66 A R E - E 0 71A 152 9,-0.2 -32,-2.5 -3,-0.1 2,-0.5 -0.781 23.9-160.9 -93.6 138.8 36.5 9.4 30.1 63 67 A V E -BE 29 70A 3 7,-2.1 7,-1.8 -2,-0.4 2,-0.8 -0.981 9.0-151.8-124.7 120.1 36.9 9.2 26.3 64 68 A V E +BE 28 69A 60 -36,-2.7 -36,-1.8 -2,-0.5 2,-0.4 -0.824 26.4 169.9 -93.6 115.9 38.4 6.2 24.6 65 69 A L E > - E 0 68A 6 3,-2.9 3,-2.2 -2,-0.8 -38,-0.1 -0.983 63.9 -17.8-132.0 125.0 40.0 7.4 21.4 66 70 A R T 3 S- 0 0 183 -2,-0.4 -1,-0.1 -40,-0.4 3,-0.1 0.798 128.4 -50.9 52.8 32.9 42.2 5.4 19.1 67 71 A G T 3 S+ 0 0 73 1,-0.3 2,-0.3 0, 0.0 -1,-0.3 0.356 118.9 102.6 91.4 -6.8 42.9 2.9 21.9 68 72 A S E < -E 65 0A 50 -3,-2.2 -3,-2.9 20,-0.0 2,-0.4 -0.812 66.9-124.8-113.6 153.7 43.8 5.5 24.5 69 73 A E E +E 64 0A 78 -2,-0.3 20,-1.0 -5,-0.2 2,-0.3 -0.761 31.4 174.8 -97.9 138.7 41.9 6.9 27.4 70 74 A F E -EF 63 88A 9 -7,-1.8 -7,-2.1 -2,-0.4 2,-0.4 -0.822 23.8-132.8-133.0 172.7 41.4 10.6 27.8 71 75 A T E -EF 62 87A 43 16,-1.6 16,-2.1 -2,-0.3 2,-1.0 -0.998 23.4-122.8-132.6 131.2 39.5 13.0 30.1 72 76 A V E + F 0 86A 1 -11,-2.0 -12,-2.1 -2,-0.4 14,-0.2 -0.659 33.7 174.1 -74.8 105.9 37.4 15.9 28.9 73 77 A T E + 0 0 49 12,-2.8 2,-0.3 -2,-1.0 -1,-0.2 0.774 63.3 5.2 -85.4 -30.1 39.0 18.8 30.7 74 78 A R E - F 0 85A 111 11,-1.0 11,-2.3 -16,-0.1 2,-0.4 -0.995 59.9-146.0-153.8 157.9 37.0 21.5 29.0 75 79 A I E + F 0 84A 42 -2,-0.3 9,-0.2 9,-0.2 2,-0.1 -0.944 20.5 167.6-133.6 115.7 34.0 22.0 26.6 76 80 A R E - F 0 83A 123 7,-2.8 7,-2.0 -2,-0.4 2,-0.4 -0.344 33.4-103.5-108.5-168.3 33.6 24.8 24.1 77 81 A R E - F 0 82A 156 5,-0.2 2,-0.4 -2,-0.1 -28,-0.0 -0.948 22.5-175.1-123.1 143.8 31.2 25.3 21.2 78 82 A F E > S- F 0 81A 63 3,-1.5 3,-1.5 -2,-0.4 -2,-0.0 -0.849 84.4 -34.0-137.5 97.1 31.9 24.9 17.5 79 83 A N T 3 S- 0 0 132 -2,-0.4 -2,-0.0 1,-0.3 0, 0.0 0.915 126.5 -46.6 53.3 44.2 28.9 26.0 15.5 80 84 A G T 3 S+ 0 0 62 1,-0.2 -1,-0.3 3,-0.0 -3,-0.0 0.522 116.7 116.3 78.9 5.7 26.8 24.6 18.3 81 85 A K E < S- F 0 78A 26 -3,-1.5 -3,-1.5 1,-0.0 -1,-0.2 -0.860 75.0 -98.7-110.4 144.7 28.7 21.4 18.6 82 86 A P E - F 0 77A 18 0, 0.0 -32,-2.4 0, 0.0 2,-0.7 -0.346 32.2-163.5 -58.7 119.9 30.6 20.2 21.6 83 87 A Q E -DF 49 76A 30 -7,-2.0 -7,-2.8 -34,-0.2 2,-0.4 -0.933 15.6-158.1-107.3 112.0 34.3 20.9 21.2 84 88 A L E -DF 48 75A 0 -36,-3.0 -36,-2.0 -2,-0.7 2,-0.6 -0.719 15.3-150.4 -97.8 138.1 36.1 18.8 23.7 85 89 A T E -DF 47 74A 10 -11,-2.3 -12,-2.8 -2,-0.4 -11,-1.0 -0.925 25.5-163.3-102.9 119.1 39.6 19.3 25.2 86 90 A L E -DF 46 72A 1 -40,-3.1 -40,-0.5 -2,-0.6 2,-0.4 -0.880 10.7-163.6-111.9 138.3 41.0 15.8 26.1 87 91 A E E - F 0 71A 76 -16,-2.1 -16,-1.6 -2,-0.4 -2,-0.0 -0.933 27.6-108.9-119.5 140.4 43.9 14.9 28.3 88 92 A E E F 0 70A 134 -2,-0.4 -18,-0.2 -18,-0.2 -1,-0.1 -0.092 360.0 360.0 -58.0 161.8 45.7 11.5 28.5 89 93 A N 0 0 124 -20,-1.0 -1,-0.1 -19,-0.1 -19,-0.1 -0.399 360.0 360.0-109.8 360.0 45.2 9.3 31.5