==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 03-DEC-10 3PTH . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.GRIMM,J.P.PELZ . 90 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6034.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 65.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 12.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 46 51.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 544 A P 0 0 149 0, 0.0 2,-0.5 0, 0.0 54,-0.0 0.000 360.0 360.0 360.0 109.7 5.0 -5.4 -0.5 2 545 A L - 0 0 31 49,-0.1 2,-0.2 16,-0.1 52,-0.1 -0.635 360.0-174.9 -96.1 119.8 3.8 -5.8 -4.1 3 546 A T > - 0 0 75 -2,-0.5 4,-2.5 1,-0.1 5,-0.2 -0.680 37.3-117.4 -98.7 161.6 5.5 -7.7 -7.0 4 547 A A H > S+ 0 0 66 -2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.877 116.1 54.9 -59.7 -40.8 4.3 -7.8 -10.6 5 548 A S H > S+ 0 0 98 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.897 108.6 45.3 -60.7 -45.4 3.9 -11.5 -10.2 6 549 A M H > S+ 0 0 82 2,-0.2 4,-1.0 1,-0.2 3,-0.2 0.948 116.0 47.0 -65.8 -44.8 1.7 -11.3 -7.2 7 550 A L H >< S+ 0 0 5 -4,-2.5 3,-0.7 1,-0.2 -2,-0.2 0.925 110.0 52.0 -61.8 -45.2 -0.5 -8.6 -8.7 8 551 A A H 3< S+ 0 0 70 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.797 106.1 55.1 -67.4 -26.6 -0.9 -10.3 -12.1 9 552 A S H 3< S+ 0 0 98 -4,-1.3 -1,-0.2 -3,-0.2 -2,-0.2 0.763 90.8 89.1 -79.3 -23.0 -2.1 -13.5 -10.4 10 553 A A S << S- 0 0 14 -4,-1.0 5,-0.1 -3,-0.7 -3,-0.0 -0.398 100.6 -83.8 -65.9 151.0 -4.9 -11.7 -8.5 11 554 A P >> - 0 0 45 0, 0.0 3,-3.6 0, 0.0 4,-0.9 -0.305 36.1-121.3 -60.1 135.5 -8.2 -11.4 -10.4 12 555 A P H >> S+ 0 0 99 0, 0.0 3,-0.8 0, 0.0 4,-0.6 0.849 113.2 62.6 -49.0 -33.7 -8.2 -8.5 -12.8 13 556 A Q H 34 S+ 0 0 159 1,-0.2 4,-0.2 2,-0.1 -3,-0.0 0.610 108.8 37.8 -65.8 -15.5 -11.2 -7.2 -10.8 14 557 A E H <> S+ 0 0 103 -3,-3.6 4,-2.1 -7,-0.1 -1,-0.2 0.384 93.0 87.1-112.1 -4.8 -9.2 -6.8 -7.5 15 558 A Q H S+ 0 0 93 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.902 107.6 50.4 -63.7 -44.1 -8.1 -2.2 -5.3 18 561 A M H X S+ 0 0 35 -4,-2.1 4,-0.9 1,-0.2 -1,-0.2 0.898 113.9 45.2 -61.7 -40.7 -4.7 -3.7 -4.2 19 562 A L H X S+ 0 0 0 -4,-2.0 4,-2.9 2,-0.2 3,-0.4 0.913 111.9 53.0 -69.0 -44.5 -2.8 -0.8 -5.9 20 563 A G H X S+ 0 0 0 -4,-2.8 4,-2.9 1,-0.2 -2,-0.2 0.889 103.7 54.6 -56.9 -43.4 -5.3 1.7 -4.4 21 564 A E H < S+ 0 0 99 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.785 116.3 40.0 -65.0 -29.3 -4.9 0.6 -0.8 22 565 A R H X S+ 0 0 84 -4,-0.9 4,-0.8 -3,-0.4 -1,-0.2 0.849 118.1 45.2 -86.0 -40.6 -1.1 1.0 -1.2 23 566 A L H X S+ 0 0 0 -4,-2.9 4,-2.2 1,-0.2 3,-0.3 0.891 101.5 65.9 -69.9 -44.7 -1.1 4.3 -3.2 24 567 A F H X S+ 0 0 53 -4,-2.9 4,-2.8 1,-0.2 5,-0.2 0.901 101.5 45.4 -54.1 -48.7 -3.7 6.2 -1.2 25 568 A P H > S+ 0 0 68 0, 0.0 4,-1.4 0, 0.0 -1,-0.2 0.880 112.4 53.0 -66.0 -33.5 -1.8 6.5 2.1 26 569 A L H < S+ 0 0 77 -4,-0.8 4,-0.4 -3,-0.3 -2,-0.2 0.898 114.0 42.5 -61.3 -40.8 1.4 7.6 0.2 27 570 A I H >X S+ 0 0 0 -4,-2.2 4,-2.5 1,-0.2 3,-1.5 0.865 105.4 62.8 -74.3 -37.0 -0.5 10.3 -1.6 28 571 A Q H 3< S+ 0 0 83 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.851 94.4 63.3 -59.1 -32.1 -2.4 11.4 1.5 29 572 A A T 3< S+ 0 0 91 -4,-1.4 -1,-0.3 1,-0.2 -2,-0.2 0.776 114.1 33.5 -61.8 -27.2 1.0 12.3 3.0 30 573 A M T <4 S+ 0 0 71 -3,-1.5 -2,-0.2 -4,-0.4 -1,-0.2 0.802 135.1 22.0 -91.4 -42.2 1.4 14.9 0.2 31 574 A H X - 0 0 45 -4,-2.5 4,-1.1 1,-0.1 -1,-0.2 -0.807 67.7-170.7-133.2 88.2 -2.3 16.0 -0.3 32 575 A P T 4 S+ 0 0 95 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.754 86.1 24.5 -61.0 -31.2 -4.3 15.2 2.8 33 576 A T T 4 S+ 0 0 141 2,-0.1 3,-0.3 1,-0.1 4,-0.3 0.635 121.2 52.6-104.9 -21.1 -7.8 16.0 1.4 34 577 A L T > S+ 0 0 76 1,-0.2 4,-2.7 2,-0.1 5,-0.3 0.481 78.4 101.6 -92.6 2.8 -7.2 15.4 -2.4 35 578 A A H X S+ 0 0 1 -4,-1.1 4,-2.7 1,-0.2 5,-0.2 0.854 78.9 51.1 -59.4 -38.8 -5.7 11.9 -2.0 36 579 A G H > S+ 0 0 8 -3,-0.3 49,-2.4 2,-0.2 4,-2.3 0.932 113.6 44.4 -64.7 -44.8 -8.9 10.1 -3.0 37 580 A K H > S+ 0 0 50 -4,-0.3 4,-2.4 47,-0.3 -2,-0.2 0.934 115.1 47.1 -62.2 -51.8 -9.3 12.1 -6.2 38 581 A I H X S+ 0 0 0 -4,-2.7 4,-2.9 1,-0.2 5,-0.2 0.914 111.2 51.9 -60.0 -43.6 -5.6 11.8 -7.1 39 582 A T H X S+ 0 0 0 -4,-2.7 4,-2.5 -5,-0.3 -1,-0.2 0.924 108.3 52.3 -55.9 -47.5 -5.6 8.1 -6.4 40 583 A G H < S+ 0 0 9 -4,-2.3 4,-0.4 -5,-0.2 43,-0.3 0.925 111.4 46.9 -54.8 -46.2 -8.7 7.7 -8.7 41 584 A M H >< S+ 0 0 0 -4,-2.4 3,-1.3 41,-0.2 38,-0.3 0.950 113.7 46.7 -58.4 -49.5 -6.8 9.6 -11.5 42 585 A L H >< S+ 0 0 0 -4,-2.9 3,-2.2 1,-0.3 -2,-0.2 0.824 97.9 70.7 -67.5 -32.0 -3.6 7.6 -11.1 43 586 A L T 3< S+ 0 0 15 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.676 86.6 68.2 -61.0 -16.0 -5.5 4.2 -11.0 44 587 A E T < S+ 0 0 110 -3,-1.3 -1,-0.3 -4,-0.4 -2,-0.2 0.639 83.5 93.9 -75.6 -14.9 -6.2 4.7 -14.7 45 588 A I S < S- 0 0 19 -3,-2.2 5,-0.1 -4,-0.2 33,-0.0 -0.312 95.2 -79.3 -73.8 157.2 -2.5 4.2 -15.6 46 589 A D > - 0 0 118 1,-0.1 4,-2.0 -2,-0.1 3,-0.3 -0.259 37.4-124.5 -55.8 143.2 -1.0 0.8 -16.5 47 590 A N H > S+ 0 0 31 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.834 109.0 62.3 -59.0 -33.2 -0.4 -1.5 -13.5 48 591 A S H > S+ 0 0 87 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.933 107.8 43.0 -59.8 -45.0 3.3 -1.9 -14.5 49 592 A E H > S+ 0 0 89 -3,-0.3 4,-2.2 1,-0.2 -1,-0.2 0.886 111.7 54.2 -67.4 -44.0 3.8 1.9 -14.1 50 593 A L H X S+ 0 0 0 -4,-2.0 4,-1.8 2,-0.2 -2,-0.2 0.894 105.9 53.1 -57.5 -43.0 1.8 1.9 -10.8 51 594 A L H X S+ 0 0 23 -4,-2.8 4,-1.1 1,-0.2 -1,-0.2 0.913 108.8 49.4 -60.0 -40.9 4.0 -0.8 -9.3 52 595 A H H >X S+ 0 0 99 -4,-1.7 4,-1.3 1,-0.2 3,-0.6 0.920 108.3 54.6 -62.6 -42.5 7.1 1.2 -10.1 53 596 A M H 3< S+ 0 0 3 -4,-2.2 7,-0.4 1,-0.2 -1,-0.2 0.845 102.7 55.8 -59.7 -37.9 5.5 4.3 -8.5 54 597 A L H 3< S+ 0 0 37 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.820 114.5 39.7 -64.0 -30.9 4.9 2.4 -5.3 55 598 A E H << S+ 0 0 163 -4,-1.1 -1,-0.2 -3,-0.6 -2,-0.2 0.607 113.9 56.6 -92.5 -17.7 8.6 1.5 -5.0 56 599 A S X - 0 0 32 -4,-1.3 4,-2.2 1,-0.1 3,-0.5 -0.890 58.7-167.1-126.7 100.6 10.0 4.9 -6.2 57 600 A P H > S+ 0 0 108 0, 0.0 4,-3.1 0, 0.0 5,-0.2 0.868 90.9 56.0 -56.3 -35.4 9.1 8.1 -4.4 58 601 A E H > S+ 0 0 125 1,-0.2 4,-2.1 2,-0.2 5,-0.1 0.912 108.9 45.8 -67.1 -39.4 10.5 10.3 -7.2 59 602 A S H > S+ 0 0 30 -3,-0.5 4,-1.7 2,-0.2 -1,-0.2 0.896 114.0 49.8 -67.8 -38.4 8.2 8.6 -9.9 60 603 A L H X S+ 0 0 10 -4,-2.2 4,-2.7 -7,-0.4 5,-0.2 0.956 109.6 51.3 -63.0 -47.9 5.2 8.8 -7.5 61 604 A R H X S+ 0 0 92 -4,-3.1 4,-2.9 1,-0.2 5,-0.3 0.917 108.5 51.0 -53.7 -47.8 5.9 12.5 -6.9 62 605 A S H X S+ 0 0 57 -4,-2.1 4,-1.7 1,-0.2 -1,-0.2 0.909 112.8 45.3 -64.8 -34.7 6.1 13.3 -10.6 63 606 A K H X S+ 0 0 37 -4,-1.7 4,-2.4 2,-0.2 -1,-0.2 0.884 112.7 50.3 -71.2 -42.1 2.8 11.6 -11.3 64 607 A V H X S+ 0 0 0 -4,-2.7 4,-2.7 2,-0.2 -2,-0.2 0.942 110.0 50.8 -57.5 -47.4 1.1 13.3 -8.3 65 608 A D H X S+ 0 0 68 -4,-2.9 4,-2.4 1,-0.2 -2,-0.2 0.880 109.4 52.0 -58.7 -39.1 2.4 16.7 -9.5 66 609 A E H X S+ 0 0 68 -4,-1.7 4,-2.1 -5,-0.3 -1,-0.2 0.949 110.2 47.4 -66.0 -47.2 0.9 15.9 -12.9 67 610 A A H X S+ 0 0 0 -4,-2.4 4,-2.5 1,-0.2 -2,-0.2 0.901 111.7 50.5 -57.4 -43.4 -2.5 15.1 -11.4 68 611 A V H X S+ 0 0 23 -4,-2.7 4,-2.9 2,-0.2 -2,-0.2 0.901 108.4 52.7 -65.3 -40.7 -2.5 18.2 -9.3 69 612 A A H X S+ 0 0 52 -4,-2.4 4,-1.4 2,-0.2 -1,-0.2 0.910 110.3 48.7 -57.8 -44.4 -1.6 20.4 -12.4 70 613 A V H < S+ 0 0 34 -4,-2.1 4,-0.4 1,-0.2 3,-0.4 0.946 112.0 47.5 -62.3 -46.9 -4.6 18.8 -14.2 71 614 A L H >< S+ 0 0 34 -4,-2.5 3,-1.7 1,-0.2 -2,-0.2 0.911 106.8 58.4 -59.6 -42.7 -6.9 19.5 -11.2 72 615 A Q H >< S+ 0 0 140 -4,-2.9 3,-0.8 1,-0.3 -1,-0.2 0.828 104.7 51.2 -56.1 -33.5 -5.6 23.2 -10.9 73 616 A A T 3< S+ 0 0 82 -4,-1.4 -1,-0.3 -3,-0.4 -2,-0.2 0.549 107.0 55.3 -83.6 -5.7 -6.7 23.8 -14.5 74 617 A H T < 0 0 118 -3,-1.7 -1,-0.2 -4,-0.4 -2,-0.2 -0.103 360.0 360.0-120.8 31.3 -10.2 22.4 -13.8 75 618 A Q < 0 0 229 -3,-0.8 -1,-0.1 0, 0.0 -4,-0.0 -0.860 360.0 360.0 112.1 360.0 -11.0 24.7 -10.8 76 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 77 55 B E 0 0 234 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 135.8 -2.8 11.9 -20.1 78 56 B L - 0 0 21 -12,-0.1 -36,-0.1 1,-0.0 -37,-0.1 -0.526 360.0-126.4 -87.5 154.4 -4.7 12.0 -16.8 79 57 B N > - 0 0 54 -38,-0.3 3,-2.0 -2,-0.2 -35,-0.1 -0.856 9.0-161.7-107.6 115.1 -8.4 12.4 -16.4 80 58 B P T 3 S+ 0 0 22 0, 0.0 -1,-0.1 0, 0.0 -39,-0.1 0.705 94.4 57.0 -65.3 -16.8 -9.8 15.2 -14.2 81 59 B N T 3 S+ 0 0 134 -40,-0.1 3,-0.1 2,-0.0 -2,-0.0 0.388 75.6 127.2 -94.6 0.5 -13.2 13.4 -14.1 82 60 B A < - 0 0 3 -3,-2.0 -41,-0.2 1,-0.1 -42,-0.1 -0.235 68.7 -96.4 -55.5 150.4 -11.7 10.1 -12.8 83 61 B E - 0 0 170 -43,-0.3 2,-0.3 1,-0.1 -1,-0.1 -0.388 33.1 -99.8 -77.9 152.1 -13.7 8.9 -9.7 84 62 B V > - 0 0 87 -44,-0.1 3,-0.5 -3,-0.1 2,-0.3 -0.493 43.2-141.4 -64.5 117.8 -12.7 9.5 -6.0 85 63 B W T 3 S+ 0 0 48 -49,-2.4 -45,-0.1 -2,-0.3 -46,-0.1 -0.634 73.3 13.5 -87.5 141.5 -11.2 6.3 -4.9 86 64 B G T 3 S+ 0 0 52 -2,-0.3 -1,-0.2 1,-0.2 -50,-0.1 0.456 76.6 153.6 81.7 1.2 -11.8 4.9 -1.3 87 65 B A < - 0 0 60 -3,-0.5 -1,-0.2 -51,-0.1 2,-0.1 -0.468 46.0-119.6 -64.9 124.7 -14.8 7.1 -0.4 88 66 B P - 0 0 109 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 -0.411 15.1-130.1 -70.3 146.0 -17.0 5.3 2.2 89 67 B V + 0 0 146 -2,-0.1 2,-0.3 2,-0.0 -2,-0.0 -0.902 50.8 134.9-101.5 107.1 -20.6 4.5 1.3 90 68 B L 0 0 148 -2,-0.7 0, 0.0 0, 0.0 0, 0.0 -0.951 360.0 360.0-143.1 163.1 -22.8 5.7 4.2 91 69 B H 0 0 237 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.383 360.0 360.0-115.5 360.0 -26.1 7.6 4.7