==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 27-JUN-03 1PVE . COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR B.KIM,K.-S.RYU,H.J.KIM,B.-S.CHOI . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5671.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 20 27.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 38.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G > 0 0 57 0, 0.0 3,-1.7 0, 0.0 6,-0.1 0.000 360.0 360.0 360.0 158.7 13.0 -12.8 6.4 2 2 A S T 3 + 0 0 131 1,-0.3 0, 0.0 2,-0.1 0, 0.0 0.638 360.0 30.1 -59.0 -18.1 14.2 -11.5 9.8 3 3 A H T 3 S+ 0 0 166 1,-0.2 -1,-0.3 2,-0.0 0, 0.0 0.193 125.9 45.5-123.5 7.8 15.4 -8.2 8.2 4 4 A M X - 0 0 65 -3,-1.7 3,-0.6 53,-0.0 -1,-0.2 -0.621 64.4-173.6-156.2 86.2 12.8 -8.0 5.4 5 5 A P T 3 S+ 0 0 41 0, 0.0 -3,-0.0 0, 0.0 45,-0.0 -0.425 78.8 26.1 -68.1 161.7 9.1 -8.7 6.0 6 6 A L T > S+ 0 0 12 1,-0.1 3,-2.5 -2,-0.1 4,-0.3 0.777 76.1 165.6 53.6 30.8 6.8 -8.8 2.9 7 7 A E G X + 0 0 103 -3,-0.6 3,-1.3 1,-0.3 4,-0.1 0.726 60.9 74.0 -54.2 -26.5 9.9 -9.8 0.8 8 8 A F G 3 S+ 0 0 95 1,-0.2 3,-0.3 2,-0.1 -1,-0.3 0.673 93.2 56.5 -58.9 -19.6 7.7 -10.8 -2.2 9 9 A L G X S+ 0 0 10 -3,-2.5 3,-2.0 1,-0.2 -1,-0.2 0.768 76.7 101.4 -73.8 -29.8 7.1 -7.1 -2.9 10 10 A R T < S+ 0 0 162 -3,-1.3 -1,-0.2 -4,-0.3 -2,-0.1 0.412 97.8 10.7 -55.2 -15.9 10.8 -6.1 -3.2 11 11 A N T 3 S+ 0 0 90 -3,-0.3 -1,-0.3 -4,-0.1 -2,-0.1 0.276 88.2 141.0-137.0 1.1 11.1 -5.9 -7.1 12 12 A Q <> - 0 0 92 -3,-2.0 4,-2.2 -4,-0.1 3,-0.1 -0.202 60.2-119.4 -67.3 146.7 7.5 -6.1 -8.4 13 13 A P T 4 S+ 0 0 86 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.774 117.2 43.8 -52.2 -31.7 6.2 -4.0 -11.5 14 14 A Q T >> S+ 0 0 95 2,-0.2 4,-3.0 1,-0.1 3,-2.0 0.891 109.5 54.9 -78.8 -40.7 3.6 -2.3 -9.2 15 15 A F T 34 S+ 0 0 8 1,-0.3 4,-0.4 2,-0.2 -1,-0.1 0.805 101.6 60.7 -65.5 -28.3 6.1 -1.8 -6.2 16 16 A Q T 3< S+ 0 0 105 -4,-2.2 -1,-0.3 1,-0.1 -2,-0.2 0.619 123.1 18.8 -62.1 -17.5 8.4 0.1 -8.7 17 17 A Q T X> S+ 0 0 120 -3,-2.0 4,-0.9 2,-0.1 3,-0.8 0.731 108.0 67.1-130.7 -47.7 5.5 2.7 -9.3 18 18 A M H >X S+ 0 0 17 -4,-3.0 4,-1.5 1,-0.3 3,-0.6 0.847 100.7 56.0 -58.6 -35.1 2.7 2.9 -6.6 19 19 A R H 3> S+ 0 0 8 -4,-0.4 4,-2.3 -5,-0.3 -1,-0.3 0.857 98.6 61.5 -64.4 -35.1 5.2 4.2 -4.0 20 20 A Q H <4 S+ 0 0 95 -3,-0.8 -1,-0.2 1,-0.2 -2,-0.2 0.812 104.0 50.8 -59.4 -32.7 6.1 7.1 -6.4 21 21 A I H XX S+ 0 0 85 -4,-0.9 4,-2.5 -3,-0.6 3,-1.6 0.932 109.7 48.1 -69.9 -47.1 2.4 8.2 -6.1 22 22 A I H 3< S+ 0 0 8 -4,-1.5 -2,-0.2 1,-0.3 -1,-0.1 0.856 100.9 65.4 -67.6 -33.2 2.4 8.1 -2.3 23 23 A Q T 3< S+ 0 0 73 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.486 116.3 29.5 -65.6 -2.8 5.7 10.1 -2.2 24 24 A Q T <4 S+ 0 0 151 -3,-1.6 -2,-0.2 -5,-0.1 -1,-0.2 0.583 135.3 28.2-123.8 -34.4 3.6 13.1 -3.8 25 25 A N >< + 0 0 86 -4,-2.5 3,-2.0 1,-0.1 -2,-0.2 -0.728 58.4 170.2-130.8 81.5 0.1 12.3 -2.3 26 26 A P G > S+ 0 0 93 0, 0.0 3,-1.8 0, 0.0 -1,-0.1 0.774 76.4 75.3 -64.4 -21.7 0.5 10.4 1.1 27 27 A S G 3 S+ 0 0 81 1,-0.3 4,-0.3 2,-0.1 -5,-0.1 0.646 90.0 58.7 -57.0 -17.5 -3.4 11.0 1.4 28 28 A L G <> S+ 0 0 78 -3,-2.0 4,-0.9 1,-0.2 -1,-0.3 0.334 72.8 95.9-101.5 5.8 -3.7 8.2 -1.2 29 29 A L H X> S+ 0 0 29 -3,-1.8 4,-2.3 2,-0.2 3,-1.2 0.968 90.1 46.4 -53.7 -51.5 -1.9 5.5 0.9 30 30 A P H 3> S+ 0 0 78 0, 0.0 4,-2.9 0, 0.0 5,-0.2 0.922 110.2 54.1 -49.6 -48.1 -5.4 4.3 2.1 31 31 A A H 3> S+ 0 0 50 -4,-0.3 4,-0.5 2,-0.2 -2,-0.2 0.626 109.2 47.7 -67.1 -14.8 -6.5 4.5 -1.6 32 32 A L H < S+ 0 0 105 -4,-0.5 3,-1.1 2,-0.2 4,-0.4 0.921 106.4 50.9 -72.9 -40.5 -6.6 -0.8 -4.6 36 36 A I H >X S+ 0 0 5 -4,-2.7 4,-3.3 1,-0.2 3,-1.8 0.925 104.8 60.1 -56.2 -42.4 -4.5 -3.9 -3.7 37 37 A G H 3< S+ 0 0 21 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.709 100.0 55.9 -60.3 -21.1 -7.8 -5.2 -2.0 38 38 A R T << S+ 0 0 185 -3,-1.1 -1,-0.3 -4,-0.6 -2,-0.2 0.538 125.9 17.5 -85.6 -8.7 -9.5 -5.0 -5.5 39 39 A E T <4 S+ 0 0 109 -3,-1.8 -2,-0.2 -4,-0.4 -3,-0.1 0.564 139.8 21.0-137.8 -25.4 -6.9 -7.3 -7.3 40 40 A N X + 0 0 68 -4,-3.3 4,-2.1 -5,-0.2 3,-0.5 -0.511 57.3 164.3-145.2 70.6 -5.0 -9.2 -4.5 41 41 A P H > S+ 0 0 77 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.778 81.7 60.3 -59.7 -22.1 -7.0 -9.2 -1.2 42 42 A Q H > S+ 0 0 136 2,-0.2 4,-1.0 1,-0.2 -5,-0.1 0.876 107.9 42.3 -72.2 -40.1 -4.6 -12.0 -0.1 43 43 A L H > S+ 0 0 29 -3,-0.5 4,-2.7 -7,-0.2 5,-0.2 0.837 112.8 57.0 -66.5 -34.9 -1.6 -9.6 -0.4 44 44 A L H X S+ 0 0 38 -4,-2.1 4,-2.7 1,-0.2 -2,-0.2 0.967 106.8 44.8 -67.1 -52.3 -3.8 -6.9 1.2 45 45 A Q H X S+ 0 0 118 -4,-2.4 4,-1.5 2,-0.2 -1,-0.2 0.802 114.1 52.5 -58.9 -30.3 -4.5 -8.8 4.4 46 46 A Q H < S+ 0 0 80 -4,-1.0 4,-0.3 2,-0.2 -2,-0.2 0.920 110.0 46.5 -72.8 -43.3 -0.8 -9.8 4.5 47 47 A I H >< S+ 0 0 0 -4,-2.7 3,-1.5 1,-0.2 7,-0.3 0.912 111.2 54.0 -58.7 -42.4 0.3 -6.1 4.2 48 48 A S H >< S+ 0 0 60 -4,-2.7 3,-1.0 1,-0.3 -2,-0.2 0.861 102.2 57.0 -64.1 -36.2 -2.3 -5.3 6.9 49 49 A Q T 3< S+ 0 0 139 -4,-1.5 -1,-0.3 1,-0.2 -2,-0.2 0.548 121.7 28.4 -67.1 -9.0 -0.7 -7.9 9.3 50 50 A H T X> S+ 0 0 76 -3,-1.5 4,-2.3 -4,-0.3 3,-1.6 0.025 78.3 140.6-138.1 21.4 2.6 -6.0 8.9 51 51 A Q H <> + 0 0 95 -3,-1.0 4,-2.4 1,-0.3 5,-0.1 0.775 69.9 53.4 -54.0 -38.8 1.4 -2.3 8.3 52 52 A E H 3> S+ 0 0 158 1,-0.2 4,-0.6 2,-0.2 -1,-0.3 0.841 116.8 40.4 -63.6 -32.7 4.1 -0.5 10.4 53 53 A H H <> S+ 0 0 104 -3,-1.6 4,-1.4 2,-0.2 -2,-0.2 0.795 109.3 59.8 -85.2 -32.1 6.9 -2.4 8.5 54 54 A F H X S+ 0 0 2 -4,-2.3 4,-2.3 -7,-0.3 3,-0.5 0.947 100.4 56.7 -57.4 -47.2 5.0 -2.0 5.1 55 55 A I H X S+ 0 0 58 -4,-2.4 4,-2.6 1,-0.2 5,-0.2 0.852 102.7 55.3 -55.5 -34.9 5.2 1.8 5.6 56 56 A Q H X S+ 0 0 122 -4,-0.6 4,-0.8 1,-0.2 -1,-0.2 0.912 114.5 38.5 -64.8 -40.7 9.1 1.5 5.8 57 57 A M H < S+ 0 0 55 -4,-1.4 -2,-0.2 -3,-0.5 -1,-0.2 0.752 121.0 47.7 -76.4 -28.0 9.2 -0.3 2.4 58 58 A L H < S+ 0 0 1 -4,-2.3 -2,-0.2 -5,-0.2 -3,-0.2 0.821 109.0 50.3 -79.6 -38.6 6.5 2.0 1.0 59 59 A N H < S+ 0 0 103 -4,-2.6 -2,-0.1 -5,-0.2 -3,-0.1 0.674 90.1 91.9 -88.0 -20.4 7.9 5.4 2.1 60 60 A E S < S- 0 0 78 -4,-0.8 2,-0.2 -5,-0.2 -37,-0.1 -0.265 91.1 -90.3 -63.4 158.4 11.5 5.0 0.8 61 61 A P - 0 0 74 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.518 31.9-123.6 -73.3 141.5 12.4 6.2 -2.8 62 62 A V S S+ 0 0 36 -2,-0.2 2,-0.3 -46,-0.1 -2,-0.1 0.677 95.0 24.0 -62.9 -19.9 12.0 3.6 -5.5 63 63 A Q + 0 0 165 3,-0.0 2,-0.3 0, 0.0 -1,-0.0 -0.975 69.0 179.0-141.7 153.3 15.7 3.9 -6.6 64 64 A E > - 0 0 148 -2,-0.3 3,-2.3 1,-0.0 4,-0.1 -0.983 44.6-102.0-153.1 155.8 18.8 5.1 -4.7 65 65 A A G > S+ 0 0 74 -2,-0.3 3,-1.4 1,-0.3 5,-0.2 0.700 112.8 73.2 -57.0 -22.2 22.6 5.5 -5.4 66 66 A G G >> S+ 0 0 30 1,-0.2 3,-2.0 2,-0.1 4,-0.7 0.726 75.0 82.9 -62.9 -20.9 23.4 2.3 -3.4 67 67 A G G <4 + 0 0 72 -3,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.627 69.2 81.2 -59.7 -14.8 21.9 0.4 -6.5 68 68 A Q G <4 S- 0 0 179 -3,-1.4 -1,-0.3 2,-0.2 -2,-0.1 0.689 131.0 -63.7 -62.9 -21.5 25.4 0.7 -8.1 69 69 A G T <4 S- 0 0 78 -3,-2.0 2,-0.3 1,-0.2 -2,-0.2 0.202 101.5 -15.4 160.1 -20.2 26.4 -2.4 -6.0 70 70 A G S < S- 0 0 46 -4,-0.7 -2,-0.2 -5,-0.2 -1,-0.2 -0.972 72.1 -80.3 175.3 177.5 26.3 -1.5 -2.2 71 71 A G 0 0 95 -2,-0.3 -5,-0.1 -4,-0.1 -4,-0.1 0.377 360.0 360.0 -80.7 1.6 26.0 1.1 0.6 72 72 A G 0 0 145 -6,-0.1 -2,-0.1 0, 0.0 -1,-0.0 0.020 360.0 360.0-172.0 360.0 29.8 2.0 0.5