==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 28-JUL-03 1Q2Z . COMPND 2 MOLECULE: ATP-DEPENDENT DNA HELICASE II, 80 KDA SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.HARRIS,D.ESPOSITO,A.SANKAR,J.D.MAMAN,J.A.HINKS,L.H.PEARL, . 120 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8784.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 85 70.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 11.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 63 52.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 118 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 72.7 -8.5 -17.9 -15.8 2 2 A P - 0 0 135 0, 0.0 2,-0.4 0, 0.0 0, 0.0 -0.024 360.0-128.2 -56.2 164.5 -6.1 -15.2 -14.8 3 3 A V - 0 0 108 4,-0.0 3,-0.1 5,-0.0 0, 0.0 -0.953 11.5-152.7-122.9 140.1 -4.9 -14.9 -11.2 4 4 A N > - 0 0 51 -2,-0.4 4,-2.4 1,-0.1 5,-0.2 -0.938 11.3-148.8-114.3 129.8 -4.9 -11.8 -8.9 5 5 A P H > S+ 0 0 26 0, 0.0 4,-1.5 0, 0.0 -1,-0.1 0.843 102.1 51.2 -61.6 -34.7 -2.4 -11.4 -6.0 6 6 A A H > S+ 0 0 3 2,-0.2 4,-2.2 1,-0.2 5,-0.1 0.863 110.9 47.6 -71.2 -37.1 -5.0 -9.4 -4.0 7 7 A E H > S+ 0 0 116 2,-0.2 4,-1.9 1,-0.2 5,-0.2 0.932 111.8 48.2 -69.7 -47.3 -7.6 -12.1 -4.5 8 8 A N H X S+ 0 0 93 -4,-2.4 4,-2.3 1,-0.2 -1,-0.2 0.845 113.6 49.6 -62.0 -34.4 -5.3 -15.0 -3.5 9 9 A F H X S+ 0 0 6 -4,-1.5 4,-1.7 -5,-0.2 -1,-0.2 0.931 108.3 50.8 -70.2 -47.5 -4.2 -13.1 -0.4 10 10 A R H < S+ 0 0 84 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.847 115.7 43.9 -59.1 -35.5 -7.8 -12.2 0.7 11 11 A V H >< S+ 0 0 90 -4,-1.9 3,-1.3 2,-0.2 -1,-0.2 0.904 108.5 55.5 -76.6 -44.1 -8.6 -15.9 0.4 12 12 A L H 3< S+ 0 0 65 -4,-2.3 3,-0.5 1,-0.3 4,-0.4 0.799 113.4 43.5 -58.9 -29.7 -5.5 -17.2 2.1 13 13 A V T 3< S+ 0 0 37 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.475 115.2 50.3 -94.2 -4.4 -6.3 -15.0 5.1 14 14 A K S < S+ 0 0 182 -3,-1.3 -1,-0.2 -5,-0.2 -2,-0.2 -0.198 93.2 74.7-125.6 40.8 -10.0 -16.0 5.0 15 15 A Q S S- 0 0 103 -3,-0.5 -2,-0.1 2,-0.2 -3,-0.1 0.720 118.0 -65.4-116.1 -47.3 -9.7 -19.8 4.9 16 16 A K S S+ 0 0 180 -4,-0.4 2,-0.3 1,-0.3 -3,-0.1 0.146 106.8 10.6-175.9 -40.6 -8.7 -20.9 8.4 17 17 A K + 0 0 167 -5,-0.3 -1,-0.3 1,-0.1 -2,-0.2 -0.985 47.6 138.1-154.1 157.1 -5.2 -19.6 9.1 18 18 A A >> - 0 0 24 -2,-0.3 3,-0.8 -5,-0.1 4,-0.6 0.249 40.1-146.3-169.5 -31.9 -2.6 -17.2 7.7 19 19 A S T 34 - 0 0 114 1,-0.2 -6,-0.1 2,-0.1 -2,-0.0 0.168 47.9-104.3 70.4 -21.8 -1.1 -15.3 10.7 20 20 A F T 34 S+ 0 0 22 1,-0.0 -1,-0.2 4,-0.0 -7,-0.0 0.969 100.6 89.5 67.5 55.8 -0.9 -12.4 8.3 21 21 A E T <> S+ 0 0 116 -3,-0.8 4,-2.9 3,-0.1 5,-0.3 0.452 82.9 38.8-141.4 -57.8 2.9 -12.6 7.7 22 22 A E H X S+ 0 0 143 -4,-0.6 4,-2.2 2,-0.2 5,-0.2 0.909 120.2 47.3 -69.1 -43.2 3.8 -14.9 4.8 23 23 A A H > S+ 0 0 13 -5,-0.4 4,-1.3 2,-0.2 -1,-0.2 0.817 117.9 44.0 -67.8 -31.0 0.9 -13.7 2.7 24 24 A S H > S+ 0 0 3 2,-0.2 4,-2.6 3,-0.1 5,-0.3 0.963 113.8 46.2 -77.3 -57.9 1.8 -10.1 3.5 25 25 A N H X S+ 0 0 88 -4,-2.9 4,-1.8 1,-0.2 -2,-0.2 0.895 115.5 49.0 -51.3 -44.2 5.5 -10.3 3.0 26 26 A Q H X S+ 0 0 122 -4,-2.2 4,-2.5 -5,-0.3 -1,-0.2 0.905 108.3 53.9 -63.3 -42.9 5.0 -12.1 -0.2 27 27 A L H X S+ 0 0 7 -4,-1.3 4,-2.3 1,-0.2 -2,-0.2 0.926 109.4 47.2 -57.3 -47.4 2.5 -9.5 -1.4 28 28 A I H X S+ 0 0 42 -4,-2.6 4,-2.4 1,-0.2 -1,-0.2 0.847 110.2 54.3 -63.7 -34.0 5.0 -6.7 -0.8 29 29 A N H X S+ 0 0 106 -4,-1.8 4,-2.2 -5,-0.3 -2,-0.2 0.919 107.8 48.9 -65.2 -44.5 7.6 -8.8 -2.6 30 30 A H H X S+ 0 0 95 -4,-2.5 4,-2.4 2,-0.2 -2,-0.2 0.915 110.3 51.9 -60.9 -44.3 5.3 -9.1 -5.7 31 31 A I H X S+ 0 0 11 -4,-2.3 4,-1.6 1,-0.2 -2,-0.2 0.944 108.0 51.1 -56.8 -50.9 4.6 -5.4 -5.6 32 32 A E H X S+ 0 0 75 -4,-2.4 4,-1.0 1,-0.2 3,-0.3 0.900 109.4 51.2 -53.6 -44.5 8.4 -4.6 -5.5 33 33 A Q H >X S+ 0 0 122 -4,-2.2 4,-1.2 1,-0.2 3,-0.9 0.918 104.9 55.6 -60.0 -45.6 8.8 -6.9 -8.5 34 34 A F H 3X S+ 0 0 28 -4,-2.4 4,-0.8 1,-0.3 5,-0.4 0.826 109.4 47.9 -56.4 -32.2 6.1 -5.1 -10.4 35 35 A L H 3< S+ 0 0 27 -4,-1.6 -1,-0.3 -3,-0.3 -2,-0.2 0.673 98.4 71.7 -82.2 -18.6 8.0 -1.9 -9.8 36 36 A D H << S+ 0 0 114 -4,-1.0 -2,-0.2 -3,-0.9 -1,-0.2 0.939 94.2 52.3 -61.7 -49.6 11.2 -3.6 -11.0 37 37 A T H < S- 0 0 56 -4,-1.2 -1,-0.2 5,-0.0 -2,-0.2 0.953 96.7-143.3 -49.8 -61.9 10.1 -3.7 -14.7 38 38 A N < + 0 0 114 -4,-0.8 2,-0.3 1,-0.2 -3,-0.1 0.907 44.6 136.7 92.4 60.0 9.3 0.1 -14.8 39 39 A E > - 0 0 101 -5,-0.4 4,-0.7 1,-0.1 3,-0.2 -0.884 61.1-120.1-131.7 163.1 6.2 0.3 -17.0 40 40 A T H >> S+ 0 0 123 -2,-0.3 3,-1.1 1,-0.2 4,-0.7 0.939 113.3 48.9 -68.7 -49.0 2.9 2.1 -17.0 41 41 A P H 34 S+ 0 0 98 0, 0.0 4,-0.5 0, 0.0 -1,-0.2 0.602 106.4 61.8 -67.5 -9.5 0.6 -1.0 -16.9 42 42 A Y H 3> S+ 0 0 83 -3,-0.2 4,-1.0 2,-0.2 3,-0.2 0.740 94.2 59.1 -86.9 -26.1 2.8 -2.3 -14.1 43 43 A F H S+ 0 0 82 -4,-0.5 4,-0.9 -3,-0.2 -1,-0.2 0.838 109.1 52.7 -71.3 -34.0 -1.0 -3.7 -10.3 46 46 A S H >X S+ 0 0 0 -4,-1.0 4,-2.2 2,-0.2 3,-0.5 0.947 110.0 46.2 -66.7 -50.4 0.9 -2.0 -7.5 47 47 A I H 3X S+ 0 0 15 -4,-2.1 4,-2.2 1,-0.3 5,-0.2 0.908 110.6 53.4 -58.4 -43.6 -1.9 0.4 -6.7 48 48 A D H 3X S+ 0 0 81 -4,-1.8 4,-0.9 1,-0.2 -1,-0.3 0.769 110.1 49.9 -62.7 -25.0 -4.4 -2.5 -6.8 49 49 A C H > + 0 0 73 1,-0.1 3,-1.2 2,-0.1 4,-0.8 -0.500 57.5 159.0-131.5 64.0 -1.7 -3.7 11.0 63 63 A E H >> S+ 0 0 34 -6,-0.6 4,-1.7 1,-0.3 3,-0.8 0.847 81.2 53.7 -53.0 -36.5 -2.8 -0.2 10.0 64 64 A Q H 3> S+ 0 0 120 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.745 98.9 62.6 -71.9 -23.8 0.5 1.1 11.5 65 65 A R H <> S+ 0 0 98 -3,-1.2 4,-1.4 2,-0.2 -1,-0.2 0.718 106.2 47.2 -72.6 -19.4 2.4 -1.4 9.4 66 66 A F H X S+ 0 0 1 -4,-3.3 3,-0.8 1,-0.2 4,-0.7 0.799 113.0 57.5 -63.3 -27.9 10.3 7.2 -4.2 78 78 A E H 3< S+ 0 0 113 -4,-1.5 2,-0.9 -5,-0.4 -1,-0.2 0.952 108.8 42.8 -66.7 -51.2 10.9 10.9 -3.7 79 79 A I T 3< S+ 0 0 137 -4,-1.6 -1,-0.3 -5,-0.1 -2,-0.1 -0.355 122.8 37.7 -92.9 53.0 14.7 10.5 -3.4 80 80 A K T <4 S- 0 0 153 -2,-0.9 -3,-0.2 -3,-0.8 -2,-0.1 0.067 108.5 -86.4-155.8 -82.7 15.0 8.1 -6.3 81 81 A Q S >< S+ 0 0 164 -4,-0.7 2,-1.3 -5,-0.1 3,-0.5 0.192 99.9 88.3-177.0 -35.9 12.8 8.4 -9.5 82 82 A L T > + 0 0 44 1,-0.2 3,-1.6 -6,-0.1 4,-0.4 -0.048 46.4 130.1 -74.1 37.5 9.5 6.6 -9.0 83 83 A N T >> + 0 0 54 -2,-1.3 4,-1.5 -6,-0.3 3,-0.8 0.682 58.9 74.8 -64.6 -15.5 8.1 9.8 -7.5 84 84 A H H <> S+ 0 0 105 -3,-0.5 4,-1.8 1,-0.2 -1,-0.3 0.814 80.6 68.3 -66.5 -30.9 5.2 9.3 -9.9 85 85 A F H <> S+ 0 0 4 -3,-1.6 4,-2.8 1,-0.2 -1,-0.2 0.841 103.9 44.4 -57.6 -33.4 3.9 6.5 -7.7 86 86 A W H <> S+ 0 0 36 -3,-0.8 4,-2.2 -4,-0.4 5,-0.3 0.913 110.3 51.6 -77.2 -44.8 3.0 9.2 -5.1 87 87 A E H X S+ 0 0 104 -4,-1.5 4,-1.1 2,-0.2 -2,-0.2 0.741 118.2 43.1 -63.0 -21.6 1.5 11.6 -7.7 88 88 A I H X S+ 0 0 48 -4,-1.8 4,-2.2 2,-0.2 -2,-0.2 0.937 111.8 47.2 -85.9 -62.2 -0.5 8.7 -8.7 89 89 A V H <>S+ 0 0 13 -4,-2.8 5,-0.9 1,-0.2 -2,-0.2 0.789 120.1 44.2 -50.7 -29.6 -1.6 7.1 -5.4 90 90 A V H ><5S+ 0 0 48 -4,-2.2 3,-2.3 -5,-0.2 -1,-0.2 0.927 107.4 54.6 -82.0 -50.6 -2.5 10.7 -4.3 91 91 A Q H 3<5S+ 0 0 159 -4,-1.1 -2,-0.2 -5,-0.3 -1,-0.2 0.796 96.6 69.7 -52.8 -29.7 -4.3 11.8 -7.5 92 92 A D T 3<5S- 0 0 85 -4,-2.2 -1,-0.3 1,-0.1 -2,-0.1 0.348 119.4-111.7 -72.5 9.1 -6.5 8.7 -7.0 93 93 A G T < 5S+ 0 0 67 -3,-2.3 2,-0.2 1,-0.3 -2,-0.2 0.563 72.4 144.3 71.9 7.1 -7.9 10.5 -4.0 94 94 A I < - 0 0 12 -5,-0.9 2,-0.3 -4,-0.1 -1,-0.3 -0.563 27.5-172.2 -81.6 143.1 -6.2 8.0 -1.7 95 95 A T - 0 0 36 -2,-0.2 3,-0.2 1,-0.2 17,-0.1 -0.831 27.5 -86.5-129.8 167.9 -4.8 9.1 1.6 96 96 A L S S- 0 0 3 16,-0.3 2,-0.6 -2,-0.3 -1,-0.2 0.097 71.2 -56.0 -62.4-177.6 -2.7 7.6 4.4 97 97 A I - 0 0 0 -34,-0.2 2,-0.3 14,-0.1 -1,-0.2 -0.514 62.5-156.8 -67.1 111.8 -4.1 5.5 7.3 98 98 A T - 0 0 30 -2,-0.6 4,-0.3 -3,-0.2 8,-0.2 -0.739 20.1-128.1 -96.3 141.2 -6.7 7.8 9.0 99 99 A K S > S+ 0 0 99 -2,-0.3 3,-1.7 8,-0.3 6,-0.9 0.940 113.2 38.8 -47.2 -59.9 -7.7 7.4 12.6 100 100 A E T 3 S+ 0 0 142 1,-0.3 -1,-0.2 5,-0.2 4,-0.1 0.809 103.1 71.8 -63.8 -29.9 -11.5 7.3 11.7 101 101 A E T 3 S+ 0 0 54 2,-0.1 -1,-0.3 3,-0.1 -2,-0.2 0.563 105.1 48.3 -63.0 -5.3 -10.7 5.3 8.6 102 102 A A S < S- 0 0 19 -3,-1.7 2,-0.7 -4,-0.3 3,-0.2 -0.389 104.5 -86.3-117.9-164.0 -10.0 2.5 11.2 103 103 A S S S+ 0 0 108 -45,-0.5 -3,-0.1 1,-0.2 -2,-0.1 -0.709 113.1 23.3-113.1 79.6 -11.7 1.1 14.2 104 104 A G S S- 0 0 57 -2,-0.7 -1,-0.2 -5,-0.3 -4,-0.1 0.361 101.2-107.0 147.2 1.9 -10.7 3.2 17.2 105 105 A S + 0 0 72 -6,-0.9 2,-0.5 1,-0.2 -5,-0.2 0.949 61.3 157.6 46.0 64.3 -9.7 6.6 15.7 106 106 A S + 0 0 62 -7,-0.7 2,-0.2 -8,-0.2 -1,-0.2 -0.783 24.5 94.7-123.9 89.2 -6.0 6.1 16.3 107 107 A V - 0 0 17 -2,-0.5 -8,-0.3 -5,-0.0 -7,-0.1 -0.823 66.0-113.4-174.0 131.7 -3.8 8.2 14.1 108 108 A T >> - 0 0 103 -2,-0.2 3,-1.5 1,-0.1 4,-1.4 -0.275 26.1-120.2 -68.2 153.2 -2.1 11.6 14.4 109 109 A A H 3>>S+ 0 0 56 1,-0.3 5,-1.2 2,-0.2 4,-1.1 0.637 115.0 63.1 -66.8 -13.8 -3.2 14.6 12.3 110 110 A E H 345S+ 0 0 143 3,-0.2 -1,-0.3 2,-0.2 5,-0.1 0.644 101.1 51.4 -84.1 -17.6 0.4 14.5 11.0 111 111 A E H <45S+ 0 0 8 -3,-1.5 4,-0.3 3,-0.2 -15,-0.2 0.916 123.8 22.6 -84.6 -49.7 -0.1 11.1 9.5 112 112 A A H X5S+ 0 0 11 -4,-1.4 4,-0.6 3,-0.1 -16,-0.3 0.856 135.3 32.1 -87.7 -39.0 -3.3 11.7 7.5 113 113 A K T <5S+ 0 0 149 -4,-1.1 3,-0.3 -5,-0.3 -3,-0.2 0.922 116.8 50.7 -86.6 -49.0 -3.2 15.5 7.0 114 114 A K T 4