==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 28-MAY-07 2Q2K . COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*TP*AP*TP*AP*(5IU)P*AP*CP*(5IU) . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.A.SCHUMACHER,T.GLOVER,N.FIRTH . 89 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5887.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 75.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 11.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 12.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 43.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A K 0 0 153 0, 0.0 56,-2.0 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 161.4 13.6 24.4 38.0 2 5 A E E -A 56 0A 90 54,-0.2 2,-0.5 55,-0.1 54,-0.2 -0.961 360.0-142.2-164.5 144.3 16.2 25.9 35.7 3 6 A T E -A 55 0A 4 52,-1.6 52,-1.6 -2,-0.3 2,-0.4 -0.963 18.1-166.3-113.7 130.6 19.5 27.7 36.0 4 7 A K E +A 54 0A 115 -2,-0.5 2,-0.3 50,-0.2 50,-0.2 -0.948 16.6 160.7-114.7 138.6 20.1 30.4 33.5 5 8 A H E -A 53 0A 33 48,-1.3 48,-3.0 -2,-0.4 2,-0.6 -0.910 24.6-152.5-156.2 123.7 23.6 31.8 33.1 6 9 A L E -A 52 0A 91 -2,-0.3 2,-0.3 46,-0.3 46,-0.3 -0.910 17.0-163.5-104.0 130.5 24.9 33.7 30.2 7 10 A L E -A 51 0A 4 44,-2.8 44,-1.6 -2,-0.6 2,-0.4 -0.791 8.8-158.4-110.1 159.3 28.6 33.5 29.7 8 11 A K E -A 50 0A 95 -2,-0.3 2,-0.5 42,-0.2 42,-0.2 -1.000 3.4-166.9-134.4 126.9 30.8 35.6 27.6 9 12 A I E -A 49 0A 3 40,-1.7 40,-1.8 -2,-0.4 2,-0.6 -0.979 19.4-136.1-115.9 128.5 34.2 34.3 26.5 10 13 A K E > -A 48 0A 99 -2,-0.5 4,-2.3 38,-0.2 38,-0.2 -0.768 7.8-135.7 -92.8 125.0 36.5 36.9 25.1 11 14 A K T 4 S+ 0 0 90 36,-1.3 8,-0.2 -2,-0.6 -1,-0.1 0.840 103.6 44.1 -33.3 -52.2 38.4 36.2 21.9 12 15 A E T 4 S+ 0 0 178 35,-0.4 -1,-0.2 1,-0.2 36,-0.1 0.904 113.2 45.4 -68.7 -48.9 41.6 37.7 23.4 13 16 A D T 4 S+ 0 0 91 1,-0.3 -2,-0.2 -3,-0.2 -1,-0.2 0.896 133.1 12.5 -68.0 -40.8 41.6 36.2 26.9 14 17 A Y S X S+ 0 0 74 -4,-2.3 4,-2.1 1,-0.1 -1,-0.3 -0.681 70.3 171.5-138.1 78.4 40.8 32.7 26.0 15 18 A P H > S+ 0 0 58 0, 0.0 4,-2.8 0, 0.0 5,-0.4 0.963 75.6 52.8 -51.6 -63.5 41.1 32.2 22.2 16 19 A Q H > S+ 0 0 121 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.832 111.5 45.4 -43.4 -49.7 40.6 28.4 22.1 17 20 A I H >> S+ 0 0 0 2,-0.2 4,-1.7 3,-0.1 3,-0.8 0.997 115.8 47.2 -61.3 -58.7 37.4 28.4 24.1 18 21 A F H 3X S+ 0 0 11 -4,-2.1 4,-2.5 1,-0.3 5,-0.2 0.937 112.4 49.0 -38.2 -70.7 36.0 31.3 22.0 19 22 A D H 3< S+ 0 0 87 -4,-2.8 4,-0.4 1,-0.2 -1,-0.3 0.775 111.0 53.9 -42.2 -36.5 37.0 29.7 18.8 20 23 A F H X< S+ 0 0 37 -4,-1.7 3,-3.6 -3,-0.8 -1,-0.2 0.999 109.8 40.4 -63.7 -73.3 35.4 26.5 19.9 21 24 A L H >< S+ 0 0 8 -4,-1.7 3,-0.8 1,-0.3 -2,-0.2 0.792 111.8 60.9 -46.5 -35.0 31.9 27.7 20.8 22 25 A E T 3< S+ 0 0 81 -4,-2.5 -1,-0.3 -5,-0.4 -2,-0.2 0.632 112.4 35.4 -73.0 -11.0 32.0 29.8 17.8 23 26 A N T < S+ 0 0 122 -3,-3.6 -1,-0.2 -4,-0.4 -2,-0.2 -0.076 82.4 117.1-139.3 42.8 32.4 26.8 15.5 24 27 A V S < S- 0 0 23 -3,-0.8 3,-0.2 1,-0.1 5,-0.1 -0.750 75.7 -81.0-103.7 152.2 30.4 23.9 16.8 25 28 A P > - 0 0 91 0, 0.0 3,-1.5 0, 0.0 4,-0.3 -0.127 62.4 -77.5 -55.3 152.0 27.5 22.4 14.8 26 29 A R T 3 S+ 0 0 234 1,-0.3 -3,-0.0 2,-0.1 0, 0.0 -0.227 116.0 10.6 -52.3 121.0 24.2 24.2 14.9 27 30 A G T 3 S+ 0 0 76 -3,-0.2 -1,-0.3 -2,-0.0 4,-0.2 0.735 101.3 99.1 82.9 23.0 22.3 23.4 18.1 28 31 A T <> + 0 0 35 -3,-1.5 4,-4.0 -4,-0.1 5,-0.2 0.452 51.2 90.2-116.3 -11.6 25.1 21.8 20.0 29 32 A K H > S+ 0 0 42 -4,-0.3 4,-2.4 2,-0.2 5,-0.4 0.968 94.0 40.5 -53.8 -58.0 26.3 24.7 22.1 30 33 A T H > S+ 0 0 44 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.960 117.9 50.2 -57.7 -46.5 24.1 23.8 25.1 31 34 A A H > S+ 0 0 32 -4,-0.2 4,-2.6 2,-0.2 -2,-0.2 0.947 112.0 47.1 -54.1 -55.6 24.8 20.1 24.6 32 35 A H H X S+ 0 0 34 -4,-4.0 4,-3.2 2,-0.2 -1,-0.2 0.945 115.2 42.8 -52.7 -57.5 28.6 20.6 24.4 33 36 A I H X S+ 0 0 0 -4,-2.4 4,-3.0 1,-0.3 5,-0.3 0.932 112.9 54.7 -55.9 -45.3 28.9 22.8 27.5 34 37 A R H X S+ 0 0 52 -4,-2.9 4,-2.2 -5,-0.4 -1,-0.3 0.926 111.8 44.8 -55.5 -41.0 26.4 20.5 29.2 35 38 A E H X S+ 0 0 54 -4,-2.6 4,-2.3 -5,-0.2 5,-0.2 0.956 110.4 53.6 -66.0 -51.0 28.8 17.7 28.3 36 39 A A H X S+ 0 0 1 -4,-3.2 4,-2.6 1,-0.2 -2,-0.2 0.866 112.8 43.6 -49.4 -46.7 31.9 19.6 29.4 37 40 A L H X S+ 0 0 0 -4,-3.0 4,-3.1 2,-0.2 -1,-0.2 0.947 107.2 58.6 -67.8 -50.5 30.5 20.3 32.8 38 41 A R H X S+ 0 0 81 -4,-2.2 4,-1.4 -5,-0.3 5,-0.2 0.914 115.1 37.7 -41.9 -55.2 29.2 16.8 33.4 39 42 A R H X S+ 0 0 84 -4,-2.3 4,-1.7 2,-0.2 -1,-0.2 0.906 115.7 52.7 -65.4 -47.9 32.7 15.5 32.9 40 43 A Y H >X S+ 0 0 17 -4,-2.6 4,-1.3 -5,-0.2 3,-0.9 0.986 106.0 56.4 -50.6 -65.6 34.3 18.4 34.8 41 44 A I H >< S+ 0 0 33 -4,-3.1 3,-2.7 1,-0.3 4,-0.5 0.835 111.7 36.0 -31.2 -81.1 32.1 18.0 37.8 42 45 A E H 3< S+ 0 0 144 -4,-1.4 -1,-0.3 1,-0.3 -2,-0.2 0.783 106.7 69.6 -53.6 -26.4 32.7 14.3 38.7 43 46 A E H << S+ 0 0 87 -4,-1.7 -1,-0.3 -3,-0.9 -2,-0.2 0.851 109.3 39.7 -56.5 -32.2 36.4 14.8 37.7 44 47 A I << 0 0 98 -3,-2.7 -2,-0.2 -4,-1.3 -3,-0.1 0.858 360.0 360.0 -79.7 -99.6 36.4 17.0 40.8 45 48 A G 0 0 102 -4,-0.5 -1,-0.3 0, 0.0 -2,-0.1 -0.696 360.0 360.0 -83.7 360.0 34.4 15.6 43.7 46 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 47 4 B K 0 0 205 0, 0.0 -36,-1.3 0, 0.0 -35,-0.4 0.000 360.0 360.0 360.0-172.4 35.1 39.9 19.9 48 5 B E E -A 10 0A 63 -38,-0.2 2,-0.5 -37,-0.1 -38,-0.2 -0.979 360.0-139.3-157.4 153.1 33.1 37.9 22.4 49 6 B T E -A 9 0A 7 -40,-1.8 -40,-1.7 -2,-0.3 2,-0.3 -0.980 21.5-166.9-120.2 114.1 30.7 35.0 22.3 50 7 B K E +A 8 0A 101 -2,-0.5 2,-0.3 -42,-0.2 -42,-0.2 -0.725 11.0 173.2 -98.0 152.5 27.8 35.4 24.6 51 8 B H E -A 7 0A 33 -44,-1.6 -44,-2.8 -2,-0.3 2,-0.7 -0.881 25.9-145.5-162.9 130.2 25.6 32.4 25.4 52 9 B L E -A 6 0A 87 -2,-0.3 2,-0.4 -46,-0.3 -46,-0.3 -0.861 22.4-166.7 -96.6 112.1 22.7 31.8 27.7 53 10 B L E -A 5 0A 1 -48,-3.0 -48,-1.3 -2,-0.7 2,-0.5 -0.803 4.6-168.6-102.9 143.7 22.7 28.3 29.1 54 11 B K E -A 4 0A 97 -2,-0.4 2,-0.4 -50,-0.2 -50,-0.2 -0.992 1.1-170.8-130.1 129.5 19.8 26.7 30.8 55 12 B I E -A 3 0A 1 -52,-1.6 -52,-1.6 -2,-0.5 2,-0.4 -0.938 20.7-124.8-117.7 143.5 19.9 23.5 32.8 56 13 B K E > -A 2 0A 42 -2,-0.4 4,-2.5 -54,-0.2 -54,-0.2 -0.734 5.8-134.7-105.9 141.5 16.9 21.7 34.1 57 14 B K T 4 S+ 0 0 98 -56,-2.0 7,-0.2 -2,-0.4 8,-0.2 0.908 106.9 22.8 -35.1 -81.5 15.9 20.5 37.5 58 15 B E T 4 S+ 0 0 145 1,-0.2 -1,-0.2 -57,-0.1 -2,-0.0 0.701 120.1 60.3 -68.5 -24.8 14.7 17.0 36.5 59 16 B D T 4 S+ 0 0 87 1,-0.2 -1,-0.2 2,-0.1 -2,-0.2 0.961 126.6 3.4 -71.8 -50.2 16.6 16.7 33.3 60 17 B Y S X S+ 0 0 51 -4,-2.5 4,-1.5 1,-0.1 -1,-0.2 -0.735 71.0 173.1-140.5 86.7 20.2 17.0 34.7 61 18 B P H > S+ 0 0 73 0, 0.0 4,-4.2 0, 0.0 5,-0.2 0.946 74.8 47.5 -57.3 -60.9 20.1 17.2 38.5 62 19 B Q H > S+ 0 0 133 2,-0.2 4,-3.6 1,-0.2 5,-0.1 0.912 114.2 45.6 -53.7 -51.0 23.8 17.0 39.4 63 20 B I H > S+ 0 0 2 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.882 115.7 51.3 -60.0 -37.7 24.9 19.6 36.8 64 21 B F H X S+ 0 0 19 -4,-1.5 4,-2.2 -8,-0.2 -2,-0.2 0.995 110.9 44.8 -63.1 -58.7 22.0 21.6 38.1 65 22 B D H X S+ 0 0 91 -4,-4.2 4,-0.8 1,-0.2 5,-0.2 0.921 111.0 56.7 -51.3 -45.6 23.0 21.3 41.7 66 23 B F H >X S+ 0 0 46 -4,-3.6 3,-1.9 1,-0.2 4,-1.5 0.951 109.1 42.6 -49.5 -62.1 26.6 22.1 40.8 67 24 B L H 3< S+ 0 0 4 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.837 111.9 58.0 -54.1 -36.1 25.9 25.4 39.1 68 25 B E H 3< S+ 0 0 98 -4,-2.2 -1,-0.3 -5,-0.2 -2,-0.2 0.582 113.1 35.6 -76.0 -7.6 23.5 26.3 41.9 69 26 B N H << S+ 0 0 100 -3,-1.9 -1,-0.2 -4,-0.8 -2,-0.2 0.552 83.1 112.6-119.8 -11.9 26.0 25.9 44.7 70 27 B V S < S- 0 0 19 -4,-1.5 2,-0.2 -5,-0.2 5,-0.1 -0.382 85.1 -96.3 -58.2 137.8 29.2 27.2 43.2 71 28 B P > - 0 0 85 0, 0.0 3,-1.9 0, 0.0 2,-0.3 -0.429 45.2-104.1 -62.8 128.5 30.1 30.5 45.0 72 29 B R T 3 S+ 0 0 247 1,-0.3 -4,-0.0 -2,-0.2 -2,-0.0 -0.362 110.1 42.8 -62.0 116.4 28.8 33.4 43.0 73 30 B G T 3 S+ 0 0 80 -2,-0.3 -1,-0.3 -3,-0.0 4,-0.1 0.147 107.8 63.6 130.6 -7.2 31.7 35.1 41.2 74 31 B T S <> S+ 0 0 52 -3,-1.9 4,-2.2 2,-0.1 -2,-0.2 0.445 71.0 95.0-119.5 -8.0 33.2 31.8 40.2 75 32 B K H >> S+ 0 0 37 -4,-0.3 4,-2.1 1,-0.2 3,-0.5 0.951 88.8 42.0 -51.3 -64.6 30.6 30.3 37.9 76 33 B T H 3> S+ 0 0 41 1,-0.2 4,-3.1 2,-0.2 5,-0.3 0.900 110.0 61.5 -50.5 -43.4 31.9 31.5 34.6 77 34 B A H 3> S+ 0 0 38 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.908 109.7 40.7 -50.3 -49.7 35.4 30.5 35.8 78 35 B H H XX S+ 0 0 39 -4,-2.2 4,-3.2 -3,-0.5 3,-0.6 0.991 111.6 51.4 -62.2 -65.5 34.3 26.9 36.1 79 36 B I H 3X S+ 0 0 0 -4,-2.1 4,-2.1 1,-0.3 -2,-0.2 0.908 114.0 49.8 -37.6 -49.9 32.2 26.6 33.0 80 37 B R H 3X S+ 0 0 48 -4,-3.1 4,-3.0 -5,-0.3 -1,-0.3 0.894 112.9 44.6 -57.9 -44.7 35.3 28.0 31.3 81 38 B E H < S+ 0 0 40 -4,-2.5 3,-0.5 3,-0.1 -1,-0.2 0.976 112.6 37.4 -79.1 -57.6 38.6 20.6 24.7 88 45 B E H 3< S+ 0 0 138 -4,-1.5 2,-3.6 1,-0.3 -2,-0.2 0.950 107.2 68.9 -56.0 -46.2 42.1 19.2 25.1 89 46 B E T 3< 0 0 83 -4,-3.0 -1,-0.3 -5,-0.1 -2,-0.1 -0.029 360.0 360.0 -63.5 37.2 40.4 16.0 26.2 90 47 B I < 0 0 140 -2,-3.6 -2,-0.2 -3,-0.5 -3,-0.1 -0.036 360.0 360.0-158.6 360.0 39.3 15.9 22.5