==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 01-AUG-03 1Q3Y . COMPND 2 MOLECULE: GAG PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.RAMBOARINA,S.DRUILLENNEC,N.MORELLET,S.BOUAZIZ,B.P.ROQUES . 41 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3645.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 11 26.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 12.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 13 A V 0 0 113 0, 0.0 8,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -28.1 -20.9 -0.5 4.2 2 14 A K + 0 0 128 3,-0.0 2,-2.2 0, 0.0 3,-0.4 0.054 360.0 143.3-155.9 36.3 -19.1 -1.9 1.1 3 15 A C >> + 0 0 8 5,-0.3 5,-1.7 9,-0.3 4,-0.9 -0.477 21.2 138.5 -80.6 75.2 -15.3 -1.3 1.5 4 16 A F T 45 + 0 0 148 -2,-2.2 2,-0.8 1,-0.2 -1,-0.2 0.715 55.5 70.6 -92.7 -21.7 -14.3 -4.6 -0.1 5 17 A N T 45S+ 0 0 98 -3,-0.4 -1,-0.2 1,-0.1 -2,-0.1 -0.150 120.2 10.4 -88.1 45.5 -11.4 -3.2 -2.2 6 18 A C T 45S- 0 0 65 -2,-0.8 -2,-0.1 -3,-0.3 -1,-0.1 0.031 108.5 -92.5-178.9 -55.4 -9.2 -2.6 0.9 7 19 A G T <5S+ 0 0 58 -4,-0.9 2,-0.2 1,-0.1 -3,-0.2 0.671 84.6 81.2 121.5 60.8 -10.6 -4.1 4.1 8 20 A K S - 0 0 30 4,-0.1 3,-1.2 2,-0.0 5,-0.1 0.853 66.3-162.0 -75.4 -32.3 -15.5 3.4 1.4 12 24 A T T 3 S- 0 0 40 1,-0.3 -9,-0.3 2,-0.1 4,-0.1 0.916 71.1 -61.2 51.9 43.7 -17.9 1.4 -0.7 13 25 A A T 3 S+ 0 0 44 -11,-0.2 -1,-0.3 1,-0.1 -10,-0.1 0.863 132.1 91.5 52.7 35.0 -15.2 0.8 -3.3 14 26 A R S < S+ 0 0 198 -3,-1.2 -2,-0.1 1,-0.0 -1,-0.1 0.098 77.9 49.0-143.6 22.9 -15.0 4.6 -3.8 15 27 A N + 0 0 95 2,-0.1 2,-0.9 -10,-0.0 -3,-0.1 -0.084 64.0 133.8-156.2 43.6 -12.3 5.7 -1.2 16 28 A H - 0 0 57 -5,-0.1 -10,-0.0 -4,-0.1 -13,-0.0 -0.773 33.3-172.4-102.7 94.1 -9.3 3.4 -1.7 17 29 A R - 0 0 131 -2,-0.9 -2,-0.1 1,-0.0 0, 0.0 -0.178 13.6-151.3 -75.5 175.8 -6.2 5.7 -1.8 18 30 A A + 0 0 88 1,-0.1 -2,-0.0 3,-0.0 -1,-0.0 -0.449 32.1 151.7-152.0 73.5 -2.7 4.4 -2.6 19 31 A P S S+ 0 0 102 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 0.895 71.4 43.7 -71.9 -41.6 0.1 6.3 -1.0 20 32 A R S S- 0 0 62 1,-0.0 4,-0.1 13,-0.0 3,-0.1 -0.263 74.8-137.4 -93.5-174.3 2.5 3.3 -0.9 21 33 A K - 0 0 106 2,-0.5 2,-2.8 1,-0.1 -1,-0.0 0.036 34.5-119.8-134.5 28.7 3.2 0.8 -3.7 22 34 A K S S+ 0 0 112 8,-0.1 3,-0.1 3,-0.0 -1,-0.1 -0.353 96.2 57.4 66.6 -74.0 3.4 -2.5 -1.8 23 35 A G S S- 0 0 2 -2,-2.8 11,-0.6 1,-0.2 -2,-0.5 0.030 117.3 -51.2 -72.0-169.7 7.0 -3.3 -2.8 24 36 A C - 0 0 2 5,-2.9 5,-0.3 9,-0.4 -1,-0.2 -0.296 44.5-139.8 -63.7 149.9 9.8 -0.8 -2.0 25 37 A W S S+ 0 0 149 -3,-0.1 -1,-0.1 3,-0.1 8,-0.0 0.131 95.1 17.3 -98.2 22.5 9.2 2.8 -3.0 26 38 A K S S+ 0 0 91 3,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.361 120.4 52.2-155.2 -46.5 12.8 3.3 -4.2 27 39 A C S S- 0 0 57 2,-0.1 -2,-0.1 10,-0.0 7,-0.0 0.897 98.0-127.6 -71.0 -36.9 14.7 0.1 -4.8 28 40 A G + 0 0 61 1,-0.3 2,-0.3 -4,-0.1 -3,-0.1 0.928 61.1 116.7 89.6 67.9 11.9 -1.3 -7.1 29 41 A K - 0 0 110 -5,-0.3 -5,-2.9 3,-0.1 -1,-0.3 -0.929 50.0-138.9-164.5 137.9 11.1 -4.8 -5.7 30 42 A E S S+ 0 0 136 -2,-0.3 2,-2.5 -7,-0.3 -6,-0.2 0.147 75.9 68.1 -80.5-155.8 8.0 -6.4 -4.1 31 43 A G S S+ 0 0 66 -8,-0.1 -1,-0.1 1,-0.1 2,-0.1 -0.395 111.1 28.0 78.7 -67.8 8.0 -8.8 -1.1 32 44 A H S S- 0 0 41 -2,-2.5 2,-0.2 -3,-0.1 -3,-0.1 -0.110 81.4-134.5-104.6-154.2 9.1 -6.0 1.3 33 45 A Q > - 0 0 56 -10,-0.1 4,-2.6 -2,-0.1 -9,-0.4 -0.849 38.8 -75.8-151.1-172.6 8.4 -2.3 1.2 34 46 A M T 4 S+ 0 0 80 -11,-0.6 -10,-0.1 -2,-0.2 -11,-0.1 0.788 128.2 53.8 -66.2 -23.3 10.1 1.1 1.7 35 47 A K T 4 S+ 0 0 126 1,-0.1 -1,-0.2 0, 0.0 -11,-0.0 0.893 114.4 38.4 -78.6 -38.8 10.0 0.6 5.4 36 48 A D T 4 S+ 0 0 93 2,-0.0 2,-0.2 0, 0.0 -2,-0.2 0.948 103.9 75.1 -77.0 -48.9 11.8 -2.9 5.3 37 49 A C < - 0 0 29 -4,-2.6 -12,-0.1 1,-0.2 -10,-0.0 -0.440 62.4-167.5 -65.5 129.5 14.3 -2.0 2.6 38 50 A T + 0 0 116 -2,-0.2 -1,-0.2 3,-0.0 -2,-0.0 0.957 9.5 176.8 -83.1 -58.5 17.1 0.2 4.0 39 51 A E + 0 0 57 1,-0.1 -2,-0.1 2,-0.0 -5,-0.0 0.969 21.0 147.8 53.4 57.5 18.8 1.3 0.7 40 52 A R 0 0 194 1,-0.1 -1,-0.1 0, 0.0 -3,-0.0 0.866 360.0 360.0 -89.9 -40.4 21.3 3.6 2.5 41 53 A Q 0 0 189 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.337 360.0 360.0 53.2 360.0 24.2 3.2 0.1