==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 01-AUG-03 1Q3Z . COMPND 2 MOLECULE: GAG PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.RAMBOARINA,S.DRUILLENNEC,N.MORELLET,S.BOUAZIZ,B.P.ROQUES . 41 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3444.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 9 22.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 13 A V 0 0 138 0, 0.0 2,-0.5 0, 0.0 6,-0.1 0.000 360.0 360.0 360.0 -60.8 -18.3 1.5 -2.1 2 14 A K - 0 0 105 2,-0.1 2,-1.7 1,-0.1 6,-0.1 -0.620 360.0-132.8 -78.1 124.0 -16.8 1.9 1.4 3 15 A C S > S- 0 0 2 5,-0.7 2,-2.6 -2,-0.5 3,-0.9 -0.544 71.1 -56.1 -78.3 87.3 -13.5 -0.1 1.6 4 16 A F T 3 S- 0 0 118 -2,-1.7 -1,-0.2 9,-0.3 9,-0.1 -0.248 120.5 -28.1 74.3 -55.9 -14.1 -1.9 4.9 5 17 A N T 3 S+ 0 0 119 -2,-2.6 -1,-0.2 3,-0.1 -2,-0.1 0.386 125.3 72.6-158.5 -40.0 -14.7 1.4 6.9 6 18 A C S < S- 0 0 81 -3,-0.9 -2,-0.1 1,-0.1 -4,-0.1 0.985 89.1-125.6 -54.1 -68.2 -12.9 4.4 5.4 7 19 A G + 0 0 26 1,-0.4 -1,-0.1 -4,-0.2 -3,-0.1 0.101 61.9 130.3 143.0 -26.5 -15.0 4.9 2.2 8 20 A K > - 0 0 108 -5,-0.2 -5,-0.7 1,-0.1 3,-0.6 -0.253 49.0-147.3 -56.8 143.0 -12.6 4.9 -0.7 9 21 A E T 3 S+ 0 0 130 1,-0.2 3,-0.3 -7,-0.1 4,-0.2 0.801 95.3 47.6 -84.8 -28.4 -13.8 2.5 -3.5 10 22 A G T 3 S+ 0 0 58 1,-0.2 -1,-0.2 2,-0.1 -2,-0.1 -0.193 85.8 93.7-104.2 43.6 -10.2 1.5 -4.6 11 23 A H S < S- 0 0 31 -3,-0.6 6,-0.5 -4,-0.0 3,-0.4 0.084 98.1-105.9-119.6 23.9 -8.9 0.8 -1.1 12 24 A T > - 0 0 27 -3,-0.3 2,-2.9 4,-0.2 4,-1.7 0.909 24.2-128.4 51.5 99.8 -9.5 -3.0 -0.9 13 25 A A T 4 S+ 0 0 50 -4,-0.2 -9,-0.3 1,-0.2 -1,-0.2 -0.247 98.0 55.7 -74.8 59.3 -12.5 -3.5 1.4 14 26 A R T 4 S+ 0 0 146 -2,-2.9 -1,-0.2 -3,-0.4 -2,-0.1 0.341 126.1 0.3-151.1 -53.0 -10.7 -6.0 3.5 15 27 A N T 4 S- 0 0 108 -3,-0.4 -2,-0.1 -4,-0.1 -3,-0.1 0.317 88.2-121.1-129.0 4.9 -7.4 -4.6 4.8 16 28 A H S < S+ 0 0 71 -4,-1.7 -4,-0.2 -5,-0.2 2,-0.2 0.980 71.4 114.2 52.6 64.3 -7.4 -1.1 3.4 17 29 A R + 0 0 58 -6,-0.5 -1,-0.1 -5,-0.2 -2,-0.1 -0.660 19.3 82.1-142.4-161.1 -4.1 -1.4 1.4 18 30 A A + 0 0 60 -2,-0.2 3,-0.2 2,-0.1 -1,-0.1 0.972 46.4 160.4 57.1 57.0 -2.8 -1.4 -2.1 19 31 A P - 0 0 58 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.908 68.0 -11.3 -75.9 -44.5 -2.7 2.4 -2.5 20 32 A R S S- 0 0 148 1,-0.5 14,-0.1 3,-0.1 -2,-0.1 -0.857 115.9 -12.4-161.3 122.3 -0.2 2.5 -5.4 21 33 A K - 0 0 83 -2,-0.3 -1,-0.5 -3,-0.2 13,-0.1 0.252 65.8-111.0 68.3 158.8 2.0 -0.2 -7.0 22 34 A K S S+ 0 0 153 -3,-0.1 -1,-0.1 -4,-0.1 -4,-0.1 0.775 98.5 54.1 -96.1 -30.5 2.6 -3.6 -5.4 23 35 A G S S- 0 0 9 10,-0.1 11,-0.3 1,-0.1 7,-0.1 0.438 121.8 -61.3 -77.7-137.3 6.3 -3.2 -4.5 24 36 A C - 0 0 0 9,-0.2 9,-0.1 10,-0.1 13,-0.1 0.202 61.5-118.6 -99.2 18.8 7.6 -0.2 -2.4 25 37 A W S S+ 0 0 132 1,-0.2 -4,-0.1 4,-0.1 9,-0.1 0.738 107.0 27.7 54.5 19.6 6.4 2.4 -4.9 26 38 A K S S+ 0 0 74 3,-0.1 -1,-0.2 0, 0.0 8,-0.1 0.244 123.6 39.6-172.6 -38.7 10.2 3.4 -5.2 27 39 A C S S- 0 0 50 2,-0.1 7,-0.0 6,-0.1 -2,-0.0 0.788 90.4-131.1 -97.3 -32.7 12.5 0.5 -4.5 28 40 A G + 0 0 48 1,-0.3 2,-0.3 5,-0.0 5,-0.0 0.766 57.0 139.9 88.4 26.0 10.5 -2.3 -6.2 29 41 A K - 0 0 103 1,-0.1 -1,-0.3 4,-0.1 -4,-0.1 -0.729 42.4-161.3-102.6 153.9 10.7 -4.7 -3.3 30 42 A E S S+ 0 0 130 -2,-0.3 -1,-0.1 -7,-0.1 -2,-0.0 0.719 81.2 75.9-103.1 -27.1 7.8 -7.0 -2.1 31 43 A G S S+ 0 0 71 2,-0.0 2,-0.2 -7,-0.0 -1,-0.1 0.918 112.8 14.9 -51.8 -42.5 9.1 -7.8 1.4 32 44 A H S S- 0 0 61 1,-0.1 5,-0.1 2,-0.0 2,-0.1 -0.720 79.5-130.4-124.8 176.5 8.0 -4.3 2.5 33 45 A Q - 0 0 50 -2,-0.2 -9,-0.2 -9,-0.1 -4,-0.1 -0.113 44.6 -75.2-108.5-150.6 5.8 -1.6 0.9 34 46 A M S > S+ 0 0 48 -11,-0.3 3,-0.6 1,-0.2 -10,-0.1 0.796 130.8 47.8 -83.1 -27.9 6.1 2.1 0.2 35 47 A K T 3 S+ 0 0 139 1,-0.2 -1,-0.2 0, 0.0 -11,-0.1 0.690 113.5 48.8 -85.7 -16.4 5.7 3.1 3.9 36 48 A D T 3 S+ 0 0 86 2,-0.0 2,-0.4 0, 0.0 -1,-0.2 -0.091 95.8 89.4-111.3 35.5 8.2 0.5 5.0 37 49 A C < + 0 0 9 -3,-0.6 -10,-0.0 1,-0.1 0, 0.0 -0.977 42.1 176.9-135.5 126.1 11.0 1.4 2.6 38 50 A T + 0 0 80 -2,-0.4 -1,-0.1 2,-0.0 -2,-0.0 0.930 6.4 173.6 -89.9 -62.6 13.8 3.9 3.0 39 51 A E S S- 0 0 78 1,-0.2 -2,-0.0 2,-0.1 0, 0.0 0.961 85.1 -47.9 53.7 54.2 15.9 3.6 -0.1 40 52 A R 0 0 199 1,-0.1 -1,-0.2 0, 0.0 -2,-0.0 0.960 360.0 360.0 53.4 54.5 18.1 6.5 0.8 41 53 A Q 0 0 199 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.570 360.0 360.0 -83.3 360.0 15.2 8.8 1.7