==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 06-JUN-07 2Q79 . COMPND 2 MOLECULE: REGULATORY PROTEIN E2; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS TYPE 16; . AUTHOR E.FREIRE . 73 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4850.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 26.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 23.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 283 A T 0 0 165 0, 0.0 72,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -69.8 12.6 -24.1 20.4 2 284 A T - 0 0 40 72,-1.7 72,-2.7 48,-0.1 2,-0.2 -0.901 360.0-132.4-108.4 124.5 9.2 -22.5 19.8 3 285 A P E -A 73 0A 4 0, 0.0 45,-1.9 0, 0.0 2,-0.3 -0.543 30.9-174.5 -73.2 136.8 7.1 -23.5 16.7 4 286 A I E -AB 72 47A 22 68,-2.7 68,-2.2 -2,-0.2 2,-0.4 -0.901 14.9-155.8-130.7 162.3 5.8 -20.6 14.8 5 287 A V E -AB 71 46A 0 41,-2.2 41,-2.4 -2,-0.3 2,-0.5 -0.985 4.7-153.7-135.9 144.9 3.5 -20.1 11.8 6 288 A H E -AB 70 45A 56 64,-2.6 64,-2.4 -2,-0.4 2,-0.6 -0.985 6.2-162.2-118.0 129.1 3.2 -17.2 9.4 7 289 A L E -AB 69 44A 1 37,-2.6 37,-1.9 -2,-0.5 2,-0.4 -0.971 15.3-167.4-111.8 119.1 -0.2 -16.6 7.7 8 290 A K E +AB 68 43A 91 60,-2.7 60,-2.5 -2,-0.6 2,-0.3 -0.922 33.5 60.0-116.9 132.6 0.2 -14.5 4.6 9 291 A G E S+ B 0 42A 8 33,-2.9 33,-2.7 -2,-0.4 2,-0.2 -0.982 78.8 13.3 163.6-150.2 -2.4 -12.7 2.6 10 292 A D > - 0 0 84 -2,-0.3 4,-2.7 56,-0.2 5,-0.2 -0.415 56.0-138.6 -62.4 126.7 -5.2 -10.1 2.5 11 293 A A H > S+ 0 0 49 1,-0.2 4,-2.1 2,-0.2 -1,-0.1 0.873 105.2 51.5 -55.8 -39.4 -5.1 -8.0 5.7 12 294 A N H > S+ 0 0 123 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.886 109.5 49.2 -65.6 -39.5 -8.9 -8.2 5.9 13 295 A T H > S+ 0 0 35 1,-0.2 4,-2.3 2,-0.2 -2,-0.2 0.917 111.0 50.1 -65.6 -43.1 -8.8 -12.0 5.6 14 296 A L H X S+ 0 0 3 -4,-2.7 4,-2.4 1,-0.2 -2,-0.2 0.864 108.0 53.6 -63.3 -36.6 -6.2 -12.1 8.4 15 297 A K H X S+ 0 0 141 -4,-2.1 4,-1.7 -5,-0.2 -1,-0.2 0.895 108.9 48.9 -64.9 -40.5 -8.3 -9.9 10.6 16 298 A C H X S+ 0 0 65 -4,-1.9 4,-2.7 2,-0.2 -2,-0.2 0.910 110.8 51.2 -65.0 -42.1 -11.2 -12.2 10.2 17 299 A L H X S+ 0 0 3 -4,-2.3 4,-3.0 2,-0.2 -2,-0.2 0.914 107.2 51.6 -62.2 -43.3 -9.0 -15.2 11.0 18 300 A R H X S+ 0 0 54 -4,-2.4 4,-0.9 2,-0.2 -1,-0.2 0.893 111.0 50.0 -61.2 -37.3 -7.7 -13.6 14.2 19 301 A Y H >< S+ 0 0 150 -4,-1.7 3,-0.7 1,-0.2 -2,-0.2 0.942 113.6 44.4 -63.9 -48.4 -11.3 -13.0 15.2 20 302 A R H >< S+ 0 0 96 -4,-2.7 3,-1.7 1,-0.2 -2,-0.2 0.838 105.4 62.8 -65.8 -33.8 -12.1 -16.6 14.5 21 303 A F H >< S+ 0 0 2 -4,-3.0 3,-2.4 1,-0.3 6,-0.2 0.761 85.9 73.9 -63.9 -25.6 -9.0 -17.8 16.3 22 304 A K G X< S+ 0 0 113 -4,-0.9 3,-0.8 -3,-0.7 -1,-0.3 0.695 86.4 65.4 -61.3 -16.4 -10.3 -16.3 19.5 23 305 A K G < S+ 0 0 124 -3,-1.7 -1,-0.3 1,-0.3 -2,-0.2 0.585 110.4 35.4 -80.8 -11.2 -12.7 -19.3 19.5 24 306 A H G X S+ 0 0 56 -3,-2.4 3,-2.4 -4,-0.2 -1,-0.3 -0.282 73.2 148.2-134.5 45.0 -9.7 -21.6 19.9 25 307 A C G X S+ 0 0 79 -3,-0.8 3,-0.7 1,-0.3 -2,-0.1 0.683 70.1 59.4 -56.2 -21.5 -7.6 -19.4 22.2 26 308 A T G 3 S+ 0 0 113 1,-0.2 -1,-0.3 -3,-0.1 31,-0.1 0.524 89.7 73.4 -86.8 -4.2 -6.1 -22.4 23.9 27 309 A L G < S+ 0 0 8 -3,-2.4 2,-0.3 -6,-0.2 30,-0.3 0.327 103.0 32.7 -91.1 6.8 -4.7 -23.8 20.6 28 310 A Y < - 0 0 23 -3,-0.7 20,-0.2 1,-0.1 3,-0.1 -0.988 64.7-137.9-157.1 157.0 -1.9 -21.2 20.4 29 311 A T S S- 0 0 88 18,-2.5 2,-0.3 1,-0.3 19,-0.2 0.935 83.7 -13.5 -81.8 -52.2 0.4 -19.2 22.7 30 312 A A E -C 47 0A 47 17,-1.1 17,-2.4 2,-0.0 2,-0.4 -0.991 50.5-153.8-152.0 155.6 0.2 -15.8 20.9 31 313 A V E -C 46 0A 31 -2,-0.3 15,-0.2 15,-0.2 2,-0.1 -0.998 25.2-132.3-131.6 134.8 -1.0 -14.2 17.7 32 314 A S - 0 0 31 13,-2.8 2,-0.1 -2,-0.4 3,-0.0 -0.278 20.6-100.7 -85.3 170.1 0.5 -11.0 16.3 33 315 A S - 0 0 90 1,-0.1 2,-0.4 11,-0.1 12,-0.4 -0.371 60.6 -80.9 -76.0 165.9 -0.9 -7.8 15.0 34 316 A T + 0 0 50 10,-0.1 2,-0.2 -2,-0.1 10,-0.2 -0.594 60.1 172.5 -77.9 124.9 -0.8 -7.6 11.2 35 317 A W B -D 43 0A 63 8,-2.9 8,-2.8 -2,-0.4 2,-0.3 -0.693 14.3-160.8-123.4 179.0 2.6 -6.7 9.7 36 318 A H - 0 0 85 -2,-0.2 2,-0.5 6,-0.2 6,-0.1 -0.960 35.5 -84.7-153.2 166.3 4.2 -6.4 6.3 37 319 A W 0 0 173 4,-0.4 0, 0.0 -2,-0.3 0, 0.0 -0.678 360.0 360.0 -79.0 125.3 7.6 -6.3 4.7 38 320 A T 0 0 155 -2,-0.5 -1,-0.1 2,-0.0 -3,-0.0 -0.405 360.0 360.0-163.7 360.0 8.9 -2.6 4.7 39 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 40 327 A K 0 0 175 0, 0.0 2,-0.0 0, 0.0 -31,-0.0 0.000 360.0 360.0 360.0 146.6 2.6 -6.2 -0.7 41 328 A S - 0 0 52 1,-0.1 -4,-0.4 -31,-0.1 2,-0.3 -0.253 360.0-115.7 -77.4 167.4 0.7 -8.9 1.2 42 329 A A E -B 9 0A 12 -33,-2.7 -33,-2.9 -6,-0.1 2,-0.3 -0.712 26.1-155.9-103.8 158.0 0.0 -8.8 4.9 43 330 A I E -BD 8 35A 6 -8,-2.8 -8,-2.9 -2,-0.3 2,-0.4 -0.985 11.4-167.2-138.9 146.1 1.3 -11.3 7.5 44 331 A V E -B 7 0A 3 -37,-1.9 -37,-2.6 -2,-0.3 2,-0.4 -0.993 14.6-149.3-129.8 135.9 0.3 -12.6 11.0 45 332 A T E -B 6 0A 34 -12,-0.4 -13,-2.8 -2,-0.4 2,-0.4 -0.882 10.5-169.8-108.7 138.6 2.6 -14.6 13.2 46 333 A L E -BC 5 31A 0 -41,-2.4 -41,-2.2 -2,-0.4 2,-0.3 -0.965 5.4-156.9-125.4 144.2 1.4 -17.2 15.7 47 334 A T E -BC 4 30A 35 -17,-2.4 -18,-2.5 -2,-0.4 -17,-1.1 -0.874 10.2-161.1-118.9 152.5 3.5 -19.0 18.3 48 335 A Y - 0 0 4 -45,-1.9 3,-0.1 -2,-0.3 -20,-0.1 -0.913 29.3-128.4-134.4 163.6 2.9 -22.3 20.0 49 336 A D S S- 0 0 128 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.715 91.1 -12.7 -79.1 -23.2 3.8 -24.4 23.1 50 337 A S S > S- 0 0 41 -47,-0.1 4,-2.0 1,-0.1 -1,-0.2 -0.976 70.2 -97.4-168.1 167.4 4.7 -27.4 21.0 51 338 A E H > S+ 0 0 104 -2,-0.3 4,-2.1 1,-0.2 5,-0.2 0.837 122.4 56.7 -64.4 -33.1 4.5 -29.0 17.5 52 339 A W H > S+ 0 0 186 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.944 106.5 47.1 -64.2 -46.7 1.5 -30.9 18.7 53 340 A Q H > S+ 0 0 30 1,-0.2 4,-2.7 2,-0.2 -2,-0.2 0.904 109.7 54.8 -61.4 -40.5 -0.4 -27.8 19.7 54 341 A R H X S+ 0 0 24 -4,-2.0 4,-2.4 1,-0.2 -1,-0.2 0.917 111.9 43.5 -58.1 -44.8 0.5 -26.2 16.3 55 342 A D H X S+ 0 0 76 -4,-2.1 4,-2.1 2,-0.2 -1,-0.2 0.854 110.7 54.1 -71.7 -33.0 -1.0 -29.2 14.5 56 343 A Q H X S+ 0 0 70 -4,-2.5 4,-1.2 2,-0.2 -2,-0.2 0.935 110.7 48.6 -64.4 -42.0 -4.0 -29.3 16.8 57 344 A F H >X S+ 0 0 0 -4,-2.7 4,-2.6 -30,-0.3 3,-0.7 0.952 113.5 45.0 -60.2 -52.4 -4.5 -25.6 15.9 58 345 A L H 3< S+ 0 0 52 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.781 110.4 54.9 -64.9 -27.8 -4.2 -26.2 12.1 59 346 A S H 3< S+ 0 0 93 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.750 116.6 37.5 -77.4 -22.0 -6.4 -29.3 12.2 60 347 A Q H << S+ 0 0 81 -4,-1.2 2,-0.2 -3,-0.7 -2,-0.2 0.803 101.6 73.1 -99.6 -35.8 -9.2 -27.3 13.8 61 348 A V S < S- 0 0 18 -4,-2.6 2,-0.8 -5,-0.2 -40,-0.0 -0.588 74.0-134.6 -84.4 144.6 -9.1 -23.8 12.2 62 349 A K - 0 0 150 -2,-0.2 -3,-0.1 -45,-0.1 -4,-0.0 -0.885 24.0-170.1 -99.7 109.7 -10.3 -23.5 8.7 63 350 A I - 0 0 42 -2,-0.8 6,-0.1 -5,-0.2 4,-0.0 -0.901 25.7-114.0-104.8 124.6 -7.8 -21.3 6.7 64 351 A P > - 0 0 52 0, 0.0 3,-2.1 0, 0.0 -1,-0.0 -0.167 18.6-122.7 -54.7 145.5 -8.8 -20.1 3.3 65 352 A K T 3 S+ 0 0 208 1,-0.3 -2,-0.0 3,-0.0 0, 0.0 0.699 111.6 67.4 -62.0 -19.8 -6.8 -21.4 0.3 66 353 A T T 3 S+ 0 0 101 2,-0.1 2,-0.5 -56,-0.0 -1,-0.3 0.475 88.2 79.5 -80.1 -3.8 -6.0 -17.8 -0.5 67 354 A I S < S- 0 0 9 -3,-2.1 2,-0.5 -58,-0.1 -58,-0.2 -0.926 79.1-137.6-108.1 127.0 -4.0 -17.6 2.7 68 355 A T E -A 8 0A 66 -60,-2.5 -60,-2.7 -2,-0.5 2,-0.5 -0.723 14.7-157.1 -85.7 128.1 -0.5 -19.0 2.6 69 356 A V E +A 7 0A 61 -2,-0.5 2,-0.4 -62,-0.2 -62,-0.2 -0.926 14.5 177.0-108.2 121.4 0.5 -21.0 5.7 70 357 A S E -A 6 0A 62 -64,-2.4 -64,-2.6 -2,-0.5 2,-0.3 -0.966 12.5-152.4-125.0 141.6 4.2 -21.4 6.4 71 358 A T E +A 5 0A 87 -2,-0.4 2,-0.3 -66,-0.2 -66,-0.2 -0.803 25.9 138.4-113.7 156.2 5.7 -23.1 9.4 72 359 A G E -A 4 0A 23 -68,-2.2 -68,-2.7 -2,-0.3 2,-0.3 -0.918 36.9-109.2-168.8-168.9 9.0 -22.6 11.2 73 360 A F E A 3 0A 103 -70,-0.3 -26,-0.0 -2,-0.3 -2,-0.0 -0.990 360.0 360.0-143.8 150.0 10.7 -22.4 14.6 74 361 A M 0 0 141 -72,-2.7 -72,-1.7 -2,-0.3 -70,-0.0 -0.666 360.0 360.0-120.0 360.0 12.3 -19.7 16.8