==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HORMONE/GROWTH FACTOR RECEPTOR 21-AUG-03 1Q8D . COMPND 2 MOLECULE: GDNF FAMILY RECEPTOR ALPHA 1; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR V.M.LEPPANEN,M.M.BESPALOV,P.RUNEBERG-ROOS,U.PUURAND, . 100 2 5 3 2 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6368.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 68.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 43 43.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 239 A E 0 0 148 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 129.5 12.0 13.8 5.4 2 240 A R - 0 0 116 1,-0.1 66,-0.2 66,-0.1 3,-0.1 -0.410 360.0-134.2 -61.5 123.9 12.9 16.5 7.9 3 241 A P - 0 0 48 0, 0.0 66,-2.0 0, 0.0 2,-0.2 -0.267 24.1 -90.2 -78.1 166.4 14.2 19.5 5.9 4 242 A N B > -a 69 0A 21 64,-0.2 4,-2.3 1,-0.1 3,-0.3 -0.556 35.9-126.5 -74.0 138.5 17.3 21.6 6.6 5 243 A a H > S+ 0 0 0 64,-2.5 4,-2.5 1,-0.2 -1,-0.1 0.827 108.4 52.2 -58.7 -35.4 16.3 24.6 8.9 6 244 A L H > S+ 0 0 29 63,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.875 109.8 49.4 -69.3 -36.1 17.8 27.2 6.6 7 245 A S H > S+ 0 0 68 -3,-0.3 4,-2.0 2,-0.2 -2,-0.2 0.914 112.5 48.2 -66.6 -40.9 15.8 25.8 3.7 8 246 A L H X S+ 0 0 19 -4,-2.3 4,-1.5 1,-0.2 -2,-0.2 0.889 108.3 54.4 -66.2 -39.1 12.7 25.9 5.9 9 247 A Q H X S+ 0 0 34 -4,-2.5 4,-2.7 1,-0.2 -1,-0.2 0.905 107.9 50.6 -61.3 -40.8 13.5 29.5 6.9 10 248 A D H X S+ 0 0 98 -4,-2.0 4,-1.1 1,-0.2 -1,-0.2 0.911 108.0 51.1 -63.3 -43.6 13.6 30.4 3.2 11 249 A S H < S+ 0 0 55 -4,-2.0 4,-0.3 1,-0.2 -1,-0.2 0.790 112.5 49.0 -65.1 -25.6 10.2 28.8 2.5 12 250 A b H >< S+ 0 0 0 -4,-1.5 3,-1.6 1,-0.2 7,-0.7 0.923 106.1 55.0 -77.2 -47.0 8.9 30.8 5.5 13 251 A K H 3< S+ 0 0 81 -4,-2.7 -2,-0.2 1,-0.3 -1,-0.2 0.688 98.6 61.4 -62.8 -20.0 10.3 34.2 4.4 14 252 A T T 3< S+ 0 0 118 -4,-1.1 2,-0.6 -5,-0.1 -1,-0.3 0.689 94.3 73.5 -80.1 -15.3 8.7 34.1 1.0 15 253 A N S <> S- 0 0 75 -3,-1.6 4,-3.1 -4,-0.3 5,-0.3 -0.877 77.5-146.7-100.3 117.8 5.3 34.0 2.7 16 254 A Y H > S+ 0 0 163 -2,-0.6 4,-1.7 1,-0.2 5,-0.2 0.807 97.6 52.2 -54.5 -32.2 4.4 37.4 4.2 17 255 A I H > S+ 0 0 76 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.967 114.9 38.7 -69.1 -53.7 2.5 35.8 7.0 18 256 A b H > S+ 0 0 4 -6,-0.2 4,-3.0 1,-0.2 5,-0.3 0.906 113.3 56.8 -64.6 -41.6 5.3 33.5 8.1 19 257 A R H X S+ 0 0 121 -4,-3.1 4,-2.1 -7,-0.7 -1,-0.2 0.927 110.2 44.9 -55.5 -46.8 8.0 36.1 7.5 20 258 A S H X S+ 0 0 62 -4,-1.7 4,-2.1 -5,-0.3 -1,-0.2 0.922 114.4 47.5 -64.3 -46.3 6.2 38.5 9.9 21 259 A R H X S+ 0 0 108 -4,-2.2 4,-1.7 2,-0.2 -2,-0.2 0.895 112.3 49.3 -64.4 -40.9 5.6 35.9 12.6 22 260 A L H X S+ 0 0 2 -4,-3.0 4,-2.3 1,-0.2 5,-0.2 0.921 110.5 50.6 -64.7 -43.7 9.2 34.6 12.5 23 261 A A H X S+ 0 0 47 -4,-2.1 4,-2.4 -5,-0.3 -1,-0.2 0.905 109.0 51.9 -60.7 -40.9 10.6 38.2 12.7 24 262 A D H X S+ 0 0 71 -4,-2.1 4,-2.7 1,-0.2 -1,-0.2 0.862 108.7 51.3 -64.1 -36.5 8.4 38.9 15.7 25 263 A F H X S+ 0 0 0 -4,-1.7 4,-1.7 25,-0.3 -2,-0.2 0.937 111.4 45.9 -66.3 -47.8 9.6 35.7 17.4 26 264 A F H < S+ 0 0 57 -4,-2.3 -2,-0.2 1,-0.2 4,-0.2 0.895 116.7 46.9 -62.3 -39.2 13.3 36.6 16.9 27 265 A T H >< S+ 0 0 77 -4,-2.4 3,-0.8 -5,-0.2 -2,-0.2 0.951 116.9 39.3 -68.5 -50.3 12.6 40.2 18.1 28 266 A N H 3< S+ 0 0 52 -4,-2.7 19,-0.2 1,-0.2 -1,-0.2 0.654 118.8 44.8 -77.9 -17.3 10.6 39.4 21.2 29 267 A c T 3< S+ 0 0 0 -4,-1.7 64,-0.3 -5,-0.2 63,-0.3 0.161 83.4 124.3-112.6 19.4 12.6 36.4 22.5 30 268 A Q < - 0 0 103 -3,-0.8 -3,-0.0 -4,-0.2 17,-0.0 -0.400 69.8 -93.4 -77.2 154.5 16.1 37.8 22.0 31 269 A P - 0 0 58 0, 0.0 8,-0.3 0, 0.0 6,-0.2 -0.222 25.4-124.0 -63.5 158.2 18.6 37.9 24.9 32 270 A E S S- 0 0 100 6,-2.6 2,-0.3 4,-0.5 7,-0.1 0.659 91.0 -3.3 -77.3 -14.7 18.8 41.1 26.9 33 271 A S S S- 0 0 49 3,-1.4 -1,-0.2 5,-0.3 0, 0.0 -0.980 73.5-102.1-166.2 167.6 22.5 41.2 26.1 34 272 A R S S+ 0 0 263 -2,-0.3 3,-0.1 1,-0.2 -1,-0.0 0.717 126.0 39.2 -70.9 -20.2 25.3 39.3 24.4 35 273 A S S S+ 0 0 105 1,-0.2 2,-0.7 -3,-0.0 -1,-0.2 0.777 110.5 61.4 -97.4 -35.1 26.4 38.2 27.8 36 274 A V - 0 0 64 1,-0.1 -3,-1.4 2,-0.1 -4,-0.5 -0.861 61.8-167.0 -99.6 114.9 23.0 37.6 29.4 37 275 A S + 0 0 68 -2,-0.7 55,-0.7 -6,-0.2 54,-0.2 0.694 66.4 81.8 -72.4 -20.4 21.0 34.8 27.6 38 276 A N S S- 0 0 33 53,-0.2 -6,-2.6 -7,-0.1 -5,-0.3 -0.482 76.6-130.4 -84.7 156.4 17.8 35.7 29.4 39 277 A d - 0 0 5 -8,-0.3 5,-0.1 -2,-0.1 2,-0.1 -0.569 43.6 -77.6 -96.5 168.1 15.5 38.6 28.3 40 278 A L > - 0 0 76 -2,-0.2 3,-2.3 1,-0.1 4,-0.2 -0.423 43.3-120.3 -63.5 142.1 14.2 41.2 30.7 41 279 A K G > S+ 0 0 166 1,-0.3 3,-2.1 2,-0.2 4,-0.4 0.838 110.5 68.7 -53.7 -34.9 11.4 39.7 32.7 42 280 A E G 3 S+ 0 0 150 1,-0.3 -1,-0.3 2,-0.1 4,-0.3 0.675 96.8 54.9 -60.3 -16.3 9.0 42.4 31.4 43 281 A N G <> S+ 0 0 55 -3,-2.3 4,-2.4 1,-0.1 -1,-0.3 0.445 77.4 96.9 -98.0 -0.4 9.3 40.8 28.0 44 282 A Y H <> S+ 0 0 32 -3,-2.1 4,-2.6 -4,-0.2 5,-0.2 0.930 84.1 48.2 -53.4 -53.0 8.2 37.3 28.9 45 283 A A H > S+ 0 0 53 -4,-0.4 4,-2.3 1,-0.2 -1,-0.2 0.898 113.8 46.7 -57.2 -43.2 4.6 37.7 27.9 46 284 A D H > S+ 0 0 82 -4,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.841 111.0 52.3 -70.0 -33.7 5.5 39.2 24.5 47 285 A c H X S+ 0 0 0 -4,-2.4 4,-2.5 -19,-0.2 -2,-0.2 0.950 111.3 46.1 -67.3 -46.3 8.1 36.5 23.8 48 286 A L H X S+ 0 0 23 -4,-2.6 4,-2.8 1,-0.2 5,-0.2 0.925 112.6 50.1 -62.8 -42.4 5.6 33.7 24.5 49 287 A L H X S+ 0 0 125 -4,-2.3 4,-1.3 -5,-0.2 -1,-0.2 0.906 112.1 48.4 -61.9 -39.1 2.9 35.4 22.4 50 288 A A H < S+ 0 0 10 -4,-2.0 -25,-0.3 2,-0.2 4,-0.2 0.890 111.4 49.9 -67.5 -39.3 5.4 35.8 19.6 51 289 A Y H >< S+ 0 0 24 -4,-2.5 3,-1.6 1,-0.2 4,-0.3 0.917 110.4 49.5 -64.1 -44.2 6.4 32.1 19.9 52 290 A S H >< S+ 0 0 55 -4,-2.8 3,-1.5 1,-0.3 -1,-0.2 0.776 97.5 71.9 -65.8 -24.9 2.8 31.0 19.8 53 291 A G T 3< S+ 0 0 12 -4,-1.3 -1,-0.3 1,-0.3 -2,-0.2 0.608 84.3 68.5 -66.6 -11.9 2.4 33.2 16.7 54 292 A L T X S+ 0 0 0 -3,-1.6 3,-1.9 -4,-0.2 5,-0.3 0.714 73.8 103.6 -79.0 -22.1 4.5 30.6 14.8 55 293 A I T < S+ 0 0 111 -3,-1.5 3,-0.1 -4,-0.3 -3,-0.0 -0.422 78.3 36.1 -63.2 131.0 1.7 28.1 15.1 56 294 A G T 3 S+ 0 0 76 1,-0.5 -1,-0.3 -2,-0.1 2,-0.2 0.291 106.3 84.4 106.8 -7.6 -0.1 27.9 11.7 57 295 A T S X S- 0 0 21 -3,-1.9 3,-2.0 -39,-0.1 -1,-0.5 -0.685 98.1 -96.8-118.5 174.0 3.1 28.4 9.7 58 296 A V T 3 S+ 0 0 76 1,-0.3 9,-0.4 -2,-0.2 -46,-0.1 0.630 122.6 66.2 -66.5 -9.6 5.9 26.1 8.5 59 297 A X T 3 S+ 0 0 0 -5,-0.3 -1,-0.3 7,-0.1 -5,-0.1 0.241 70.8 143.4 -94.1 10.8 7.7 27.2 11.6 60 298 A T < - 0 0 53 -3,-2.0 7,-0.5 -6,-0.1 -5,-0.1 -0.310 55.4-114.0 -54.8 124.6 5.2 25.5 13.9 61 299 A P 0 0 13 0, 0.0 4,-0.1 0, 0.0 -1,-0.1 -0.116 360.0 360.0 -58.3 160.4 7.0 24.1 16.9 62 300 A N 0 0 134 3,-1.5 3,-0.1 4,-0.1 -2,-0.0 -0.578 360.0 360.0 71.5 360.0 7.2 20.3 17.4 63 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 64 309 A V 0 0 85 0, 0.0 24,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 153.0 10.5 23.2 21.0 65 310 A A - 0 0 6 1,-0.2 -3,-1.5 -4,-0.1 19,-0.1 -0.431 360.0 -94.1 -90.7 165.1 12.0 23.7 17.6 66 311 A P - 0 0 6 0, 0.0 2,-1.8 0, 0.0 -1,-0.2 -0.154 55.1 -82.4 -68.4 172.9 10.4 23.5 14.1 67 312 A W S S+ 0 0 150 -7,-0.5 2,-0.3 -9,-0.4 -7,-0.1 -0.588 96.9 89.5 -81.3 83.7 10.4 20.3 12.1 68 313 A a - 0 0 3 -2,-1.8 2,-0.3 -66,-0.2 -64,-0.2 -0.970 51.2-159.8-164.6 166.5 13.9 20.7 10.7 69 314 A D B -a 4 0A 30 -66,-2.0 -64,-2.5 -2,-0.3 -63,-0.3 -0.862 32.6-107.8-144.9 179.9 17.6 19.9 11.3 70 315 A e > + 0 0 16 -2,-0.3 3,-0.8 -66,-0.2 -66,-0.1 0.161 64.9 132.5-104.0 21.6 21.0 21.2 10.2 71 316 A S T 3 S+ 0 0 68 1,-0.2 -2,-0.1 -68,-0.1 -66,-0.1 -0.421 74.8 18.6 -67.5 147.0 22.1 18.2 8.1 72 317 A N T 3 S+ 0 0 161 1,-0.1 -1,-0.2 -2,-0.1 -68,-0.1 0.855 78.3 135.8 60.7 39.5 23.4 19.3 4.7 73 318 A S X - 0 0 14 -3,-0.8 3,-2.3 1,-0.2 -2,-0.1 0.606 36.9-174.9 -89.3 -14.0 24.1 23.0 5.7 74 319 A G G > - 0 0 60 1,-0.3 3,-1.4 2,-0.2 -1,-0.2 -0.292 68.9 -5.0 56.9-133.3 27.4 23.0 4.0 75 320 A N G 3 S+ 0 0 172 1,-0.3 3,-0.3 2,-0.1 -1,-0.3 0.609 133.9 63.3 -67.4 -12.4 29.3 26.2 4.6 76 321 A D G <> + 0 0 90 -3,-2.3 4,-2.3 1,-0.2 -1,-0.3 0.164 66.1 113.0 -99.5 18.9 26.3 27.6 6.4 77 322 A L H <> S+ 0 0 79 -3,-1.4 4,-2.7 1,-0.2 5,-0.2 0.906 74.2 52.4 -57.0 -46.8 26.3 25.1 9.3 78 323 A E H > S+ 0 0 136 -3,-0.3 4,-1.8 1,-0.2 -1,-0.2 0.911 111.9 47.4 -58.4 -41.2 27.2 27.6 12.0 79 324 A D H > S+ 0 0 90 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.888 110.4 51.9 -66.4 -39.6 24.3 29.8 10.9 80 325 A e H X S+ 0 0 0 -4,-2.3 4,-2.8 1,-0.2 -2,-0.2 0.921 110.2 48.8 -63.2 -42.6 21.9 26.9 10.8 81 326 A L H X S+ 0 0 70 -4,-2.7 4,-2.7 1,-0.2 -1,-0.2 0.840 108.0 53.9 -66.9 -32.7 22.9 25.9 14.3 82 327 A K H X S+ 0 0 113 -4,-1.8 4,-1.0 -5,-0.2 -1,-0.2 0.907 111.5 46.8 -66.2 -40.7 22.4 29.5 15.5 83 328 A F H >X S+ 0 0 12 -4,-2.1 3,-0.6 2,-0.2 4,-0.6 0.959 115.2 44.1 -64.0 -52.7 18.9 29.4 14.1 84 329 A L H >X S+ 0 0 15 -4,-2.8 4,-2.2 1,-0.2 3,-1.2 0.898 111.9 53.3 -61.0 -41.5 18.0 26.0 15.6 85 330 A N H 3X S+ 0 0 66 -4,-2.7 4,-2.6 1,-0.3 -1,-0.2 0.721 94.5 69.1 -68.6 -20.5 19.5 26.9 18.9 86 331 A F H << S+ 0 0 41 -4,-1.0 -1,-0.3 -3,-0.6 -2,-0.2 0.775 111.0 35.6 -68.0 -22.9 17.4 30.1 19.1 87 332 A F H << S+ 0 0 3 -3,-1.2 3,-0.5 -4,-0.6 -2,-0.2 0.865 127.0 35.6 -92.4 -46.8 14.5 27.6 19.5 88 333 A K H < S+ 0 0 102 -4,-2.2 -3,-0.2 1,-0.2 -2,-0.2 0.798 125.2 35.1 -80.5 -32.9 16.2 24.9 21.6 89 334 A D S < S+ 0 0 110 -4,-2.6 2,-0.7 -5,-0.2 -1,-0.2 -0.407 78.8 133.4-120.6 56.6 18.5 26.9 23.8 90 335 A N > - 0 0 8 -3,-0.5 4,-2.5 1,-0.2 5,-0.2 -0.884 32.1-173.7-111.7 102.6 16.5 30.0 24.4 91 336 A T H > S+ 0 0 47 -2,-0.7 4,-2.5 -54,-0.2 5,-0.2 0.878 86.8 54.0 -61.0 -40.3 16.5 31.0 28.1 92 337 A d H > S+ 0 0 0 -55,-0.7 4,-2.2 -63,-0.3 -1,-0.2 0.943 111.9 44.4 -58.9 -49.0 14.0 33.8 27.5 93 338 A L H > S+ 0 0 3 -64,-0.3 4,-2.5 2,-0.2 5,-0.2 0.890 112.0 51.7 -64.1 -43.0 11.6 31.4 25.8 94 339 A K H X S+ 0 0 110 -4,-2.5 4,-1.9 1,-0.2 -1,-0.2 0.917 113.2 45.5 -61.3 -42.9 12.0 28.7 28.5 95 340 A N H X S+ 0 0 38 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.856 111.8 51.9 -68.9 -35.6 11.3 31.3 31.2 96 341 A A H X S+ 0 0 0 -4,-2.2 4,-2.7 -5,-0.2 5,-0.4 0.900 109.7 49.1 -67.8 -40.5 8.3 32.7 29.3 97 342 A I H X S+ 0 0 67 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.904 112.5 48.2 -65.2 -40.9 6.8 29.2 28.9 98 343 A Q H < S+ 0 0 166 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.905 115.0 46.5 -65.5 -40.0 7.3 28.5 32.6 99 344 A A H < S+ 0 0 49 -4,-2.2 -2,-0.2 -5,-0.1 -1,-0.2 0.903 136.8 2.5 -70.3 -43.9 5.7 31.8 33.5 100 345 A F H < 0 0 130 -4,-2.7 -3,-0.2 -5,-0.1 -2,-0.2 0.402 360.0 360.0-128.0 0.8 2.6 31.8 31.3 101 346 A G < 0 0 107 -4,-2.3 -4,-0.0 -5,-0.4 -53,-0.0 -0.286 360.0 360.0 -81.0 360.0 2.5 28.5 29.4