==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 12-APR-99 1QA4 . COMPND 2 MOLECULE: PROTEIN (HIV-1 NEF ANCHOR DOMAIN (2-57)); . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.GEYER,H.R.KALBITZER . 56 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6724.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 26.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A G 0 0 135 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 142.6 0.0 -9.4 18.0 2 3 A G + 0 0 53 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.950 360.0 158.9-154.1 130.2 0.1 -12.3 20.5 3 4 A K + 0 0 169 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.704 20.1 141.0-154.2 95.1 2.6 -15.1 21.3 4 5 A W - 0 0 178 -2,-0.2 2,-1.2 2,-0.1 -2,-0.0 -0.999 51.5-117.3-139.9 141.0 2.4 -16.8 24.7 5 6 A S + 0 0 129 -2,-0.3 2,-0.5 2,-0.0 -2,-0.0 -0.639 44.3 166.5 -79.5 97.7 2.9 -20.4 25.8 6 7 A K + 0 0 164 -2,-1.2 2,-0.3 2,-0.0 -2,-0.1 -0.943 4.4 150.2-119.7 112.3 -0.5 -21.4 27.3 7 8 A S + 0 0 122 -2,-0.5 2,-0.3 2,-0.0 -2,-0.0 -0.998 12.3 172.3-143.7 137.4 -1.2 -25.1 27.9 8 9 A S - 0 0 118 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.967 4.4-177.4-149.1 128.6 -3.4 -26.9 30.5 9 10 A V - 0 0 142 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.953 12.0-149.6-128.1 146.6 -4.4 -30.5 30.8 10 11 A V + 0 0 124 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.939 19.2 166.3-118.1 137.1 -6.7 -32.3 33.3 11 12 A G + 0 0 78 -2,-0.4 -2,-0.0 2,-0.0 0, 0.0 -0.838 8.8 147.1-154.2 111.9 -6.3 -35.9 34.5 12 13 A W - 0 0 191 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.996 45.3-104.3-145.5 147.6 -8.1 -37.6 37.4 13 14 A P + 0 0 125 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.500 43.5 162.5 -74.1 136.3 -9.4 -41.2 38.2 14 15 A A + 0 0 76 -2,-0.2 3,-0.1 1,-0.1 -2,-0.0 -0.918 15.2 142.7-158.0 127.1 -13.1 -41.8 38.1 15 16 A V - 0 0 119 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.621 66.1 -47.7-128.2 -56.3 -15.2 -45.0 37.9 16 17 A R - 0 0 230 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.887 41.5-168.1 177.7 152.1 -18.5 -44.7 39.9 17 18 A E - 0 0 123 -2,-0.2 2,-0.3 -3,-0.1 -3,-0.0 -0.968 5.8-171.1-155.3 136.1 -19.9 -43.7 43.3 18 19 A R + 0 0 159 -2,-0.3 2,-0.5 2,-0.0 -2,-0.0 -0.735 16.3 172.1-132.1 84.8 -23.3 -44.2 45.1 19 20 A M + 0 0 118 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.815 5.1 161.9 -97.5 129.1 -23.5 -42.2 48.3 20 21 A R + 0 0 166 -2,-0.5 2,-0.2 3,-0.0 3,-0.1 -0.935 8.3 134.6-150.9 122.9 -26.9 -42.0 50.1 21 22 A R + 0 0 191 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.815 34.1 77.9-149.5-172.7 -27.7 -41.1 53.7 22 23 A A + 0 0 97 -2,-0.2 -1,-0.1 1,-0.2 0, 0.0 0.960 59.1 175.3 64.9 53.8 -30.1 -39.1 55.9 23 24 A E - 0 0 132 -3,-0.1 2,-0.6 1,-0.0 -1,-0.2 -0.776 34.2-116.4 -95.6 133.6 -33.0 -41.5 55.7 24 25 A P - 0 0 128 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 -0.557 29.4-142.7 -71.8 114.1 -36.2 -40.9 57.7 25 26 A A - 0 0 101 -2,-0.6 2,-0.5 1,-0.0 0, 0.0 -0.590 9.9-132.4 -80.2 136.4 -36.7 -43.7 60.2 26 27 A A - 0 0 103 -2,-0.3 2,-0.2 4,-0.0 4,-0.1 -0.781 23.0-162.9 -93.1 126.5 -40.2 -44.9 60.9 27 28 A D + 0 0 168 -2,-0.5 2,-0.9 2,-0.1 -1,-0.0 -0.473 54.6 46.7-100.5 173.6 -41.3 -45.3 64.6 28 29 A G S S- 0 0 65 -2,-0.2 2,-0.3 2,-0.0 -1,-0.1 -0.787 115.5 -2.7 102.4 -93.7 -44.1 -47.2 66.2 29 30 A V + 0 0 146 -2,-0.9 -2,-0.1 1,-0.0 0, 0.0 -0.885 60.7 152.6-143.1 107.8 -44.4 -50.6 64.7 30 31 A G + 0 0 84 -2,-0.3 2,-0.3 -4,-0.1 -4,-0.0 -0.395 44.9 93.2-132.2 58.1 -42.1 -51.9 61.9 31 32 A A S S- 0 0 98 3,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.997 73.9-102.8-149.8 147.4 -41.8 -55.6 62.3 32 33 A A - 0 0 95 -2,-0.3 2,-2.4 1,-0.1 3,-0.3 -0.471 38.2-113.3 -71.6 136.9 -43.6 -58.7 60.9 33 34 A S > + 0 0 84 1,-0.2 4,-0.7 -2,-0.2 -1,-0.1 -0.442 57.6 151.2 -71.2 76.4 -46.0 -60.5 63.3 34 35 A R H >> S+ 0 0 126 -2,-2.4 4,-1.1 2,-0.2 3,-1.0 0.973 72.7 41.1 -72.3 -57.5 -44.0 -63.7 63.7 35 36 A D H 3> S+ 0 0 88 -3,-0.3 4,-3.7 1,-0.3 5,-0.4 0.856 104.2 69.3 -59.8 -35.9 -45.1 -64.6 67.2 36 37 A L H 3> S+ 0 0 108 1,-0.2 4,-2.6 2,-0.2 -1,-0.3 0.853 99.2 50.7 -50.7 -37.4 -48.7 -63.7 66.3 37 38 A E H X S+ 0 0 102 -4,-3.7 3,-0.8 1,-0.2 4,-0.6 0.879 119.2 45.7 -72.6 -39.9 -49.7 -67.6 69.4 40 41 A G H 3< S+ 0 0 49 -4,-2.6 3,-0.3 -5,-0.4 -2,-0.2 0.855 112.7 49.6 -72.2 -36.5 -52.7 -67.2 67.1 41 42 A A T 3< S+ 0 0 86 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.1 -0.160 101.0 67.7 -96.2 39.8 -52.5 -70.6 65.6 42 43 A I T <4 S+ 0 0 108 -3,-0.8 2,-0.3 1,-0.3 -1,-0.2 0.652 99.3 31.8-123.0 -37.8 -52.2 -72.5 68.9 43 44 A T < - 0 0 76 -4,-0.6 -1,-0.3 -3,-0.3 3,-0.2 -0.808 50.1-161.0-122.9 164.4 -55.5 -72.0 70.7 44 45 A S S S+ 0 0 129 -2,-0.3 2,-0.7 1,-0.2 -1,-0.1 0.787 87.0 31.7-108.6 -51.4 -59.2 -71.7 69.6 45 46 A S S S+ 0 0 97 3,-0.0 2,-0.5 0, 0.0 3,-0.4 -0.809 73.0 172.7-115.0 89.5 -61.0 -70.2 72.5 46 47 A N - 0 0 105 -2,-0.7 -3,-0.0 1,-0.2 0, 0.0 -0.864 68.9 -6.2-101.9 125.6 -58.7 -67.9 74.4 47 48 A T S S+ 0 0 142 -2,-0.5 2,-0.3 1,-0.2 -1,-0.2 0.957 87.8 172.3 58.9 55.0 -60.1 -65.7 77.3 48 49 A A - 0 0 64 -3,-0.4 -1,-0.2 2,-0.1 2,-0.1 -0.758 29.8-120.9 -98.5 142.1 -63.7 -66.7 76.6 49 50 A A - 0 0 78 -2,-0.3 -1,-0.0 2,-0.0 0, 0.0 -0.468 69.7 -16.6 -79.9 151.6 -66.6 -65.7 78.9 50 51 A N S S- 0 0 146 -2,-0.1 2,-0.3 2,-0.0 -2,-0.1 0.072 84.8 -91.9 48.2-163.3 -68.8 -68.3 80.6 51 52 A N - 0 0 142 2,-0.2 2,-0.1 0, 0.0 -2,-0.0 -0.924 37.7 -80.0-141.8 166.4 -68.9 -71.9 79.4 52 53 A A S S+ 0 0 84 -2,-0.3 -2,-0.0 2,-0.0 0, 0.0 -0.431 94.5 12.5 -70.0 140.0 -70.7 -74.2 76.9 53 54 A A S S- 0 0 101 -2,-0.1 2,-0.3 1,-0.1 -2,-0.2 0.335 70.8-138.3 73.0 152.4 -74.1 -75.6 78.1 54 55 A C - 0 0 122 2,-0.1 2,-0.2 0, 0.0 -1,-0.1 -0.982 12.0-112.7-145.0 154.7 -76.1 -74.5 81.1 55 56 A A 0 0 79 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.602 360.0 360.0 -89.2 149.5 -78.1 -76.1 84.0 56 57 A W 0 0 302 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.1 -0.448 360.0 360.0 68.9 360.0 -81.9 -75.7 84.4