==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 12-APR-99 1QA5 . COMPND 2 MOLECULE: PROTEIN (MYRISTOYLATED HIV-1 NEF ANCHOR DOMAIN . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.GEYER,H.R.KALBITZER . 56 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6289.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 28.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A G 0 0 106 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 23.6 65.2 -10.6 10.2 2 3 A G + 0 0 42 1,-0.1 3,-0.1 0, 0.0 0, 0.0 -0.290 360.0 116.7 59.7-142.6 63.4 -13.8 11.5 3 4 A K + 0 0 168 1,-0.1 2,-0.1 2,-0.1 -1,-0.1 0.855 52.3 147.4 49.5 36.1 63.3 -14.0 15.3 4 5 A W + 0 0 210 1,-0.1 -1,-0.1 0, 0.0 0, 0.0 -0.484 39.8 34.8 -96.3 170.8 59.5 -13.8 15.1 5 6 A S S S+ 0 0 134 1,-0.2 2,-0.3 -2,-0.1 -1,-0.1 0.962 77.3 141.2 50.2 86.3 56.8 -15.5 17.3 6 7 A K + 0 0 155 -3,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.984 17.9 162.6-155.2 141.5 58.4 -15.4 20.8 7 8 A S - 0 0 130 -2,-0.3 2,-0.2 2,-0.0 0, 0.0 -0.977 20.8-139.9-154.1 165.9 57.2 -14.8 24.4 8 9 A S - 0 0 115 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.649 14.0-161.4-122.2-179.6 58.1 -15.4 28.0 9 10 A V + 0 0 126 -2,-0.2 -2,-0.0 1,-0.1 0, 0.0 -0.959 44.2 37.7-155.5 172.6 56.2 -16.4 31.2 10 11 A V - 0 0 113 -2,-0.3 2,-0.3 1,-0.0 -1,-0.1 0.430 54.9-163.1 58.1 154.7 56.4 -16.4 35.1 11 12 A G - 0 0 53 2,-0.0 -1,-0.0 0, 0.0 0, 0.0 -0.928 18.6-145.2-156.0 178.7 57.8 -13.5 37.2 12 13 A W > + 0 0 205 -2,-0.3 2,-1.2 2,-0.0 3,-0.5 -0.485 13.7 176.5-159.4 81.0 59.2 -12.6 40.7 13 14 A P T 3 + 0 0 95 0, 0.0 4,-0.4 0, 0.0 -2,-0.0 -0.211 43.1 122.1 -80.7 45.2 58.4 -9.0 41.9 14 15 A A T >> S+ 0 0 66 -2,-1.2 3,-1.6 1,-0.2 4,-0.7 0.955 72.0 49.7 -74.4 -49.4 60.0 -9.7 45.4 15 16 A V H <> S+ 0 0 94 -3,-0.5 4,-3.6 1,-0.3 5,-0.4 0.850 94.2 77.9 -57.9 -32.0 62.6 -6.9 45.2 16 17 A R H 3> S+ 0 0 135 1,-0.2 4,-0.8 2,-0.2 -1,-0.3 0.841 92.1 53.2 -46.9 -36.0 59.7 -4.6 44.2 17 18 A E H X4 S+ 0 0 103 -3,-1.6 3,-0.5 -4,-0.4 4,-0.5 0.987 117.9 31.3 -67.4 -58.8 58.7 -4.5 48.0 18 19 A R H 3< S+ 0 0 149 -4,-0.7 4,-0.5 1,-0.2 3,-0.4 0.855 118.5 56.0 -70.1 -33.0 62.2 -3.5 49.4 19 20 A M H 3< S+ 0 0 100 -4,-3.6 -1,-0.2 1,-0.2 -2,-0.2 0.701 84.5 89.2 -72.2 -16.9 63.1 -1.4 46.3 20 21 A R S << S+ 0 0 175 -4,-0.8 -1,-0.2 -3,-0.5 -2,-0.2 0.944 109.9 6.5 -45.2 -61.4 59.8 0.6 46.8 21 22 A R S S- 0 0 200 -4,-0.5 2,-0.1 -3,-0.4 -2,-0.1 0.921 93.4-136.0 -87.5 -76.1 61.5 3.2 49.1 22 23 A A - 0 0 59 -4,-0.5 -1,-0.1 2,-0.0 -2,-0.1 -0.580 50.2 -45.7 155.8 -84.4 65.3 2.5 49.2 23 24 A E - 0 0 135 -2,-0.1 2,-1.1 2,-0.1 -4,-0.0 -0.554 41.6-132.5 176.8 112.4 67.0 2.6 52.6 24 25 A P + 0 0 125 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.600 48.0 149.1 -75.7 98.0 66.7 5.2 55.4 25 26 A A - 0 0 72 -2,-1.1 2,-0.6 3,-0.0 3,-0.2 -0.960 41.5-136.5-131.9 150.1 70.4 5.8 56.4 26 27 A A S S- 0 0 96 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.898 78.8 -31.7-111.3 110.9 72.2 9.0 57.7 27 28 A D S S+ 0 0 172 -2,-0.6 -1,-0.2 1,-0.0 2,-0.0 0.965 96.6 139.2 47.0 71.6 75.6 9.8 56.1 28 29 A G - 0 0 56 -3,-0.2 2,-0.3 0, 0.0 -1,-0.0 0.057 54.5 -82.4-114.5-134.6 76.6 6.2 55.4 29 30 A V - 0 0 144 1,-0.1 3,-0.1 -2,-0.0 0, 0.0 -0.946 27.3-178.4-146.2 122.2 78.4 4.6 52.4 30 31 A G S S- 0 0 66 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.928 72.7 -22.7 -84.5 -50.7 76.8 3.4 49.1 31 32 A A - 0 0 24 1,-0.2 -1,-0.2 2,-0.2 4,-0.1 -0.829 66.8 -97.1-146.8-174.9 79.9 2.0 47.3 32 33 A A S S- 0 0 61 3,-0.3 -1,-0.2 -2,-0.2 -2,-0.1 0.957 104.0 -13.5 -76.1 -79.8 83.7 2.3 47.4 33 34 A S S S- 0 0 63 2,-0.0 -2,-0.2 0, 0.0 3,-0.0 0.911 133.8 -22.6 -87.9 -77.5 84.5 4.8 44.5 34 35 A R S S- 0 0 173 -4,-0.1 -3,-0.2 0, 0.0 -4,-0.1 0.677 98.8 -68.8-100.3 -98.7 81.4 5.2 42.4 35 36 A D S >> S+ 0 0 132 -4,-0.1 3,-1.0 -5,-0.1 4,-0.6 0.628 122.1 41.8-125.7 -62.7 78.7 2.4 42.5 36 37 A L H >> S+ 0 0 133 1,-0.2 4,-4.1 2,-0.2 3,-0.5 0.846 99.2 75.3 -61.5 -35.0 79.8 -0.9 40.8 37 38 A E H 3> S+ 0 0 72 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.869 88.6 61.5 -47.8 -38.1 83.3 -0.7 42.4 38 39 A K H <4 S+ 0 0 98 -3,-1.0 -1,-0.2 1,-0.2 -2,-0.2 0.964 119.1 24.9 -54.9 -53.5 81.7 -1.8 45.7 39 40 A H H << S+ 0 0 132 -4,-0.6 -2,-0.2 -3,-0.5 -1,-0.2 0.876 118.2 61.9 -79.4 -38.0 80.6 -5.1 44.3 40 41 A G H < S+ 0 0 48 -4,-4.1 2,-2.7 1,-0.2 -3,-0.2 0.805 84.2 82.1 -58.7 -27.9 83.3 -5.2 41.5 41 42 A A S < S+ 0 0 62 -4,-2.1 2,-0.3 -5,-0.4 -1,-0.2 -0.294 70.1 103.6 -76.2 60.7 85.9 -5.3 44.3 42 43 A I + 0 0 126 -2,-2.7 2,-0.6 2,-0.0 -3,-0.0 -0.890 43.6 178.6-145.0 110.2 85.5 -9.1 44.8 43 44 A T + 0 0 136 -2,-0.3 2,-0.5 13,-0.1 -2,-0.0 -0.896 13.2 156.5-117.6 106.2 88.1 -11.6 43.4 44 45 A S + 0 0 51 -2,-0.6 2,-0.5 2,-0.0 9,-0.1 -0.923 4.7 163.5-131.6 108.8 87.3 -15.3 44.2 45 46 A S + 0 0 121 -2,-0.5 2,-0.4 11,-0.1 -2,-0.0 -0.932 7.0 176.0-129.4 111.3 88.8 -18.0 41.9 46 47 A N - 0 0 98 -2,-0.5 2,-0.4 2,-0.1 -2,-0.0 -0.928 21.0-139.7-116.1 137.8 88.9 -21.6 43.0 47 48 A T - 0 0 126 -2,-0.4 3,-0.1 5,-0.0 -2,-0.0 -0.758 66.6 -31.5 -96.1 140.0 90.1 -24.5 40.9 48 49 A A S S+ 0 0 102 -2,-0.4 -2,-0.1 1,-0.1 0, 0.0 -0.286 97.5 104.2 53.3-129.5 88.3 -27.9 41.0 49 50 A A S S- 0 0 74 3,-0.0 2,-0.3 2,-0.0 3,-0.1 -0.132 76.3 -86.7 53.4-153.7 86.8 -28.3 44.5 50 51 A N S S+ 0 0 138 1,-0.3 -3,-0.0 -3,-0.1 -1,-0.0 -0.943 89.2 31.0-146.3 168.4 83.0 -27.7 44.7 51 52 A N S S- 0 0 127 -2,-0.3 -1,-0.3 1,-0.0 -2,-0.0 0.943 76.1-140.2 44.2 85.5 80.4 -24.8 45.2 52 53 A A + 0 0 83 -3,-0.1 -7,-0.1 -6,-0.0 -5,-0.0 -0.165 64.3 14.4 -66.6 167.4 82.3 -21.9 43.6 53 54 A A S S+ 0 0 61 -9,-0.1 3,-0.0 1,-0.1 -8,-0.0 -0.064 87.0 87.5 58.0-167.7 82.2 -18.4 45.3 54 55 A C S S+ 0 0 128 1,-0.1 2,-0.3 2,-0.1 -1,-0.1 0.855 83.3 87.8 47.4 36.1 80.9 -18.1 48.9 55 56 A A 0 0 48 1,-0.1 -2,-0.1 -9,-0.0 -1,-0.1 -0.907 360.0 360.0-163.1 131.7 84.5 -18.7 50.0 56 57 A W 0 0 273 -2,-0.3 -1,-0.1 -12,-0.1 -11,-0.1 0.987 360.0 360.0 57.1 360.0 87.6 -16.5 50.6