==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER AMYLOID 19-JUL-96 1QCM . COMPND 2 MOLECULE: AMYLOID BETA PEPTIDE; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.KOHNO,K.KOBAYASHI,T.MAEDA,K.SATO,A.TAKASHIMA . 11 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1247.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 5 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 36.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 131 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -66.0 -7.7 3.5 -2.8 2 2 A S - 0 0 81 0, 0.0 5,-0.1 0, 0.0 0, 0.0 -0.025 360.0 -65.9-168.6 47.2 -5.2 1.8 -5.1 3 3 A N S > S+ 0 0 131 3,-0.1 4,-2.0 2,-0.1 5,-0.2 0.947 75.8 158.7 64.6 45.7 -3.0 -0.6 -3.1 4 4 A K H > S+ 0 0 163 2,-0.2 4,-1.8 1,-0.2 3,-0.2 0.979 71.0 55.8 -66.5 -52.6 -1.4 2.3 -1.2 5 5 A G H 4 S+ 0 0 58 1,-0.3 4,-0.5 2,-0.2 -1,-0.2 0.820 109.6 52.7 -49.2 -24.5 -0.3 0.0 1.7 6 6 A A H >> S+ 0 0 61 1,-0.2 3,-1.6 2,-0.2 4,-1.5 0.921 100.5 55.5 -78.2 -45.9 1.4 -1.8 -1.2 7 7 A I H 3X S+ 0 0 76 -4,-2.0 4,-1.9 1,-0.3 -2,-0.2 0.794 93.9 74.7 -57.8 -23.2 3.2 1.3 -2.6 8 8 A I H 3< S+ 0 0 128 -4,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.895 99.7 41.4 -58.3 -37.7 4.6 1.6 1.0 9 9 A G H <4 S+ 0 0 60 -3,-1.6 -1,-0.2 -4,-0.5 -2,-0.2 0.897 104.2 66.0 -77.8 -39.5 6.9 -1.4 0.2 10 10 A L H < 0 0 143 -4,-1.5 -2,-0.2 1,-0.1 -1,-0.2 0.925 360.0 360.0 -47.8 -46.9 7.7 -0.2 -3.3 11 11 A M < 0 0 215 -4,-1.9 -1,-0.1 0, 0.0 -4,-0.0 -0.353 360.0 360.0 -54.2 360.0 9.5 2.9 -1.8