==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 24-JUN-99 1QJH . COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6; . SOURCE 2 SYNTHETIC: YES; . AUTHOR O.KRISTENSEN,D.E.OTZEN,M.OLIVEBERG . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5954.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 76 81.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 31 33.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 119 0, 0.0 2,-0.3 0, 0.0 34,-0.0 0.000 360.0 360.0 360.0 137.1 4.9 14.9 29.7 2 2 A R E -A 67 0A 112 65,-2.2 65,-2.9 2,-0.0 2,-0.4 -0.969 360.0-104.5-145.7 158.9 8.7 14.9 29.5 3 3 A R E +A 66 0A 91 -2,-0.3 90,-1.2 63,-0.3 2,-0.3 -0.719 39.7 171.6 -93.2 134.9 11.6 17.0 30.9 4 4 A Y E -AB 65 92A 15 61,-3.4 61,-3.1 -2,-0.4 2,-0.5 -0.947 31.0-138.5-138.5 157.6 13.6 19.4 28.8 5 5 A E E -AB 64 91A 64 86,-2.8 86,-2.8 -2,-0.3 2,-0.7 -0.985 22.9-154.7-115.5 119.2 16.2 22.1 29.1 6 6 A V E -AB 63 90A 1 57,-3.1 57,-2.1 -2,-0.5 2,-0.5 -0.881 7.0-161.4-101.5 114.3 15.3 25.0 26.9 7 7 A N E -AB 62 89A 27 82,-3.4 82,-2.5 -2,-0.7 2,-0.4 -0.841 10.2-176.4 -98.6 129.3 18.4 27.0 25.8 8 8 A I E -AB 61 88A 0 53,-3.4 53,-3.8 -2,-0.5 2,-0.6 -0.982 16.2-162.1-131.1 133.3 17.9 30.6 24.5 9 9 A V E -AB 60 87A 39 78,-2.2 77,-2.9 -2,-0.4 78,-1.3 -0.964 20.3-165.2-112.7 120.7 20.3 33.1 23.2 10 10 A L E -AB 59 85A 0 49,-2.8 49,-2.4 -2,-0.6 75,-0.2 -0.730 35.8 -76.3-106.5 156.8 18.9 36.6 23.2 11 11 A N > - 0 0 19 73,-2.3 3,-1.2 -2,-0.3 47,-0.2 -0.212 38.0-141.2 -47.8 128.3 20.1 39.8 21.4 12 12 A P T 3 S+ 0 0 21 0, 0.0 -1,-0.2 0, 0.0 46,-0.1 0.642 94.4 68.2 -70.9 -14.4 23.1 41.1 23.4 13 13 A N T 3 S+ 0 0 128 44,-0.1 2,-0.1 46,-0.0 -2,-0.1 0.435 71.2 118.6 -86.3 -0.8 21.9 44.7 22.9 14 14 A L < - 0 0 8 -3,-1.2 2,-0.1 70,-0.1 -4,-0.0 -0.412 61.2-133.2 -67.6 140.4 18.9 44.4 25.2 15 15 A D >> - 0 0 71 -2,-0.1 4,-2.4 1,-0.1 3,-0.7 -0.440 35.4 -94.4 -84.1 169.0 18.8 46.6 28.3 16 16 A Q H 3> S+ 0 0 168 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.851 125.5 51.2 -55.0 -39.7 17.9 45.0 31.6 17 17 A S H 3> S+ 0 0 86 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.819 112.3 47.8 -69.2 -28.8 14.2 45.8 31.4 18 18 A Q H <> S+ 0 0 86 -3,-0.7 4,-2.6 2,-0.2 5,-0.2 0.864 110.5 51.9 -76.4 -37.2 14.1 44.3 27.9 19 19 A L H X S+ 0 0 14 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.932 111.2 47.8 -62.4 -47.8 15.9 41.2 29.1 20 20 A A H X S+ 0 0 49 -4,-2.5 4,-2.4 2,-0.2 -2,-0.2 0.938 112.0 48.9 -59.8 -49.4 13.4 40.8 31.9 21 21 A L H X S+ 0 0 106 -4,-2.0 4,-2.9 2,-0.2 5,-0.2 0.951 112.9 46.4 -57.3 -51.8 10.4 41.3 29.6 22 22 A E H X S+ 0 0 7 -4,-2.6 4,-3.0 1,-0.2 5,-0.3 0.933 111.8 52.0 -57.3 -46.5 11.7 38.8 27.1 23 23 A K H X S+ 0 0 38 -4,-2.6 4,-1.5 1,-0.2 -1,-0.2 0.887 113.7 44.3 -58.4 -41.0 12.5 36.3 29.8 24 24 A E H X S+ 0 0 95 -4,-2.4 4,-1.9 2,-0.2 -1,-0.2 0.873 113.3 49.7 -70.8 -40.5 9.0 36.7 31.2 25 25 A I H X S+ 0 0 61 -4,-2.9 4,-2.4 2,-0.2 -2,-0.2 0.912 111.5 49.5 -64.8 -41.2 7.3 36.5 27.8 26 26 A I H X S+ 0 0 0 -4,-3.0 4,-2.3 -5,-0.2 -1,-0.2 0.883 108.3 52.9 -66.0 -37.8 9.3 33.3 26.9 27 27 A Q H X S+ 0 0 37 -4,-1.5 4,-2.0 -5,-0.3 -1,-0.2 0.907 109.7 49.1 -65.3 -40.0 8.3 31.7 30.2 28 28 A R H X S+ 0 0 140 -4,-1.9 4,-3.2 2,-0.2 -2,-0.2 0.924 108.0 53.6 -63.7 -43.6 4.7 32.4 29.4 29 29 A A H X S+ 0 0 13 -4,-2.4 4,-1.3 2,-0.2 -2,-0.2 0.918 105.7 55.0 -56.5 -43.3 5.1 30.9 25.9 30 30 A L H ><>S+ 0 0 0 -4,-2.3 5,-2.3 1,-0.2 3,-1.1 0.962 111.3 42.5 -54.3 -54.6 6.5 27.8 27.6 31 31 A E H ><5S+ 0 0 67 -4,-2.0 3,-2.7 1,-0.3 -1,-0.2 0.901 106.8 62.6 -60.5 -38.8 3.4 27.5 29.8 32 32 A N H 3<5S+ 0 0 106 -4,-3.2 -1,-0.3 1,-0.3 -2,-0.2 0.787 103.9 50.3 -58.7 -25.2 1.2 28.3 26.7 33 33 A Y T <<5S- 0 0 36 -4,-1.3 -1,-0.3 -3,-1.1 -2,-0.2 0.100 133.2 -92.0-100.5 23.9 2.6 25.2 25.2 34 34 A G T < 5S+ 0 0 39 -3,-2.7 -3,-0.2 1,-0.2 2,-0.2 0.563 74.7 154.0 83.7 10.1 1.8 23.1 28.2 35 35 A A < - 0 0 10 -5,-2.3 2,-0.7 -6,-0.2 32,-0.2 -0.465 38.8-149.9 -78.8 142.8 5.1 23.5 30.0 36 36 A R E -C 66 0A 136 30,-3.1 30,-1.9 -2,-0.2 2,-0.8 -0.959 24.5-139.5-105.8 110.0 5.5 23.2 33.8 37 37 A V E +C 65 0A 24 -2,-0.7 28,-0.2 28,-0.2 3,-0.1 -0.672 32.5 166.4 -79.7 110.2 8.4 25.6 34.4 38 38 A E E + 0 0 48 26,-2.1 2,-0.3 -2,-0.8 27,-0.2 0.829 64.8 10.0 -91.6 -37.0 10.7 24.0 37.0 39 39 A K E -C 64 0A 110 25,-2.1 25,-2.3 2,-0.0 2,-0.3 -0.981 58.6-174.7-144.1 153.5 13.8 26.2 36.7 40 40 A V E +C 63 0A 52 -2,-0.3 2,-0.3 23,-0.2 23,-0.2 -0.989 9.1 173.7-149.0 140.1 14.8 29.4 35.0 41 41 A A E -C 62 0A 30 21,-2.7 21,-3.0 -2,-0.3 2,-0.7 -0.981 28.6-151.2-155.3 140.3 18.1 31.2 34.7 42 42 A I E -C 61 0A 81 -2,-0.3 19,-0.2 19,-0.2 3,-0.1 -0.952 18.3-171.8-106.1 113.7 19.8 34.1 33.0 43 43 A L E - 0 0 85 17,-3.3 18,-0.1 -2,-0.7 -1,-0.1 0.196 39.0-111.5 -95.2 15.6 23.4 33.1 32.6 44 44 A G E - 0 0 28 16,-0.3 16,-2.3 2,-0.1 2,-0.5 -0.145 47.2 -37.3 89.8 177.8 24.8 36.4 31.4 45 45 A L E +C 59 0A 82 14,-0.2 2,-0.3 -3,-0.1 14,-0.2 -0.705 65.1 177.7 -83.7 124.2 26.3 38.0 28.3 46 46 A M E -C 58 0A 89 12,-3.2 12,-1.9 -2,-0.5 2,-0.5 -0.918 23.5-142.5-131.2 157.0 28.5 35.5 26.5 47 47 A V E -C 57 0A 95 -2,-0.3 2,-0.6 10,-0.2 10,-0.2 -0.974 18.9-130.7-123.5 125.4 30.5 35.4 23.3 48 48 A L + 0 0 69 8,-2.4 5,-0.3 -2,-0.5 9,-0.0 -0.647 27.6 174.3 -74.7 115.1 30.8 32.4 21.1 49 49 A A + 0 0 93 -2,-0.6 -1,-0.2 1,-0.4 4,-0.1 0.780 57.4 62.3 -90.1 -32.9 34.6 31.9 20.5 50 50 A Y S S+ 0 0 190 2,-0.1 -1,-0.4 6,-0.1 2,-0.2 -0.973 89.2 33.7-152.9 138.1 34.2 28.7 18.6 51 51 A P S S- 0 0 74 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 0.536 97.5-110.1 -70.5 170.9 32.9 27.7 16.2 52 52 A I + 0 0 162 -2,-0.2 2,-0.3 0, 0.0 -2,-0.1 -0.525 55.7 153.2 -69.1 128.7 33.5 30.9 14.2 53 53 A A - 0 0 39 -2,-0.3 2,-0.1 -5,-0.3 -5,-0.0 -0.991 45.4-102.8-155.5 160.2 30.2 32.7 13.6 54 54 A K S S+ 0 0 155 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.478 103.2 24.1 -80.0 154.8 28.6 36.0 13.0 55 55 A D S S+ 0 0 99 -2,-0.1 -1,-0.2 1,-0.1 -7,-0.0 0.965 72.2 173.2 52.5 59.8 26.8 37.7 15.9 56 56 A P + 0 0 52 0, 0.0 -8,-2.4 0, 0.0 2,-0.2 0.709 48.0 87.1 -71.3 -21.0 28.9 35.9 18.5 57 57 A Q E + C 0 47A 97 -10,-0.2 2,-0.3 -12,-0.0 -10,-0.2 -0.525 51.6 135.2 -84.5 149.7 27.5 37.9 21.4 58 58 A G E - C 0 46A 4 -12,-1.9 -12,-3.2 -2,-0.2 2,-0.5 -0.951 52.3-101.5 178.4 156.2 24.3 37.0 23.3 59 59 A Y E -AC 10 45A 49 -49,-2.4 -49,-2.8 -2,-0.3 2,-0.7 -0.796 37.6-137.5 -90.0 131.0 22.5 36.7 26.6 60 60 A F E -A 9 0A 41 -16,-2.3 -17,-3.3 -2,-0.5 2,-0.4 -0.818 22.5-175.9 -94.1 114.9 22.1 33.1 27.6 61 61 A L E -AC 8 42A 1 -53,-3.8 -53,-3.4 -2,-0.7 2,-0.4 -0.900 3.4-171.0-109.5 140.7 18.7 32.2 29.0 62 62 A W E +AC 7 41A 43 -21,-3.0 -21,-2.7 -2,-0.4 2,-0.4 -0.995 7.5 179.9-137.4 131.8 18.0 28.7 30.3 63 63 A Y E -AC 6 40A 0 -57,-2.1 -57,-3.1 -2,-0.4 2,-0.5 -0.985 14.7-155.3-130.5 142.5 14.8 27.0 31.4 64 64 A Q E +AC 5 39A 25 -25,-2.3 -26,-2.1 -2,-0.4 -25,-2.1 -0.980 32.7 160.2-113.7 125.7 14.2 23.5 32.8 65 65 A V E -AC 4 37A 0 -61,-3.1 -61,-3.4 -2,-0.5 2,-0.5 -0.920 41.9-134.6-142.2 167.8 10.7 22.3 32.2 66 66 A E E +AC 3 36A 60 -30,-1.9 -30,-3.1 -2,-0.3 -63,-0.3 -0.998 46.1 145.1-121.0 122.5 8.3 19.3 31.9 67 67 A M E -A 2 0A 1 -65,-2.9 -65,-2.2 -2,-0.5 -32,-0.2 -0.970 54.0 -75.1-153.8 163.7 6.1 19.6 28.9 68 68 A P > - 0 0 23 0, 0.0 3,-1.6 0, 0.0 4,-0.4 -0.431 33.6-136.3 -66.9 133.8 4.4 17.4 26.3 69 69 A E G >> S+ 0 0 87 1,-0.3 3,-1.6 2,-0.2 4,-0.5 0.878 101.9 64.5 -55.4 -39.5 6.8 16.1 23.6 70 70 A D G 34 S+ 0 0 107 1,-0.3 -1,-0.3 2,-0.1 4,-0.2 0.679 103.4 46.0 -60.5 -19.4 4.2 16.9 20.9 71 71 A R G <> S+ 0 0 87 -3,-1.6 4,-2.3 -38,-0.1 -1,-0.3 0.391 87.2 91.7-105.3 2.8 4.4 20.6 21.6 72 72 A V H <> S+ 0 0 24 -3,-1.6 4,-2.3 -4,-0.4 -2,-0.1 0.925 87.5 44.6 -63.4 -48.1 8.2 20.8 21.7 73 73 A N H X S+ 0 0 101 -4,-0.5 4,-2.2 1,-0.2 -1,-0.2 0.872 114.2 51.0 -65.5 -37.1 8.7 21.7 18.1 74 74 A D H > S+ 0 0 62 -4,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.909 110.0 47.9 -66.5 -45.8 5.9 24.2 18.1 75 75 A L H X S+ 0 0 2 -4,-2.3 4,-2.7 1,-0.2 5,-0.2 0.934 111.0 53.3 -61.0 -43.0 7.2 26.0 21.2 76 76 A A H X S+ 0 0 22 -4,-2.3 4,-2.6 1,-0.2 -2,-0.2 0.911 110.9 44.2 -58.6 -47.2 10.7 26.1 19.6 77 77 A R H X S+ 0 0 136 -4,-2.2 4,-2.4 2,-0.2 -1,-0.2 0.906 111.3 55.4 -65.7 -40.3 9.4 27.7 16.4 78 78 A E H < S+ 0 0 76 -4,-2.4 4,-0.4 1,-0.2 -2,-0.2 0.935 113.1 41.5 -56.2 -48.6 7.3 30.1 18.4 79 79 A L H >< S+ 0 0 0 -4,-2.7 3,-0.9 1,-0.2 -2,-0.2 0.876 111.6 56.3 -68.3 -37.2 10.4 31.2 20.3 80 80 A R H 3< S+ 0 0 168 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.878 99.9 56.5 -66.6 -38.0 12.6 31.3 17.2 81 81 A I T 3< S+ 0 0 116 -4,-2.4 -1,-0.2 -5,-0.1 2,-0.2 0.632 81.9 107.3 -70.1 -10.6 10.5 33.7 15.2 82 82 A R S X S- 0 0 65 -3,-0.9 3,-1.0 -4,-0.4 -3,-0.0 -0.532 74.7-135.0 -66.8 133.0 10.8 36.2 18.1 83 83 A D T 3 S+ 0 0 134 1,-0.3 -1,-0.1 -2,-0.2 -4,-0.0 0.819 101.2 50.7 -60.3 -38.6 13.1 38.9 16.9 84 84 A N T 3 S+ 0 0 44 -74,-0.1 -73,-2.3 -73,-0.1 2,-0.7 0.612 92.4 91.5 -76.4 -10.9 15.3 39.1 20.0 85 85 A V E < +B 10 0A 9 -3,-1.0 -75,-0.2 -75,-0.2 3,-0.1 -0.766 45.1 169.2 -89.9 118.5 15.8 35.3 20.0 86 86 A R E + 0 0 100 -77,-2.9 2,-0.3 -2,-0.7 -76,-0.2 0.730 65.8 16.3 -97.3 -26.7 18.9 34.4 18.0 87 87 A R E -B 9 0A 119 -78,-1.3 -78,-2.2 -8,-0.1 2,-0.4 -0.993 54.4-169.0-152.3 141.5 19.1 30.8 18.9 88 88 A V E +B 8 0A 40 -2,-0.3 2,-0.5 -80,-0.2 -80,-0.2 -0.976 9.0 175.1-134.3 119.7 17.0 28.1 20.4 89 89 A M E -B 7 0A 125 -82,-2.5 -82,-3.4 -2,-0.4 2,-0.6 -0.974 8.6-168.2-127.5 117.0 18.3 24.7 21.6 90 90 A V E -B 6 0A 44 -2,-0.5 2,-0.4 -84,-0.2 -84,-0.2 -0.921 7.1-170.5-109.0 119.4 16.0 22.3 23.3 91 91 A V E -B 5 0A 64 -86,-2.8 -86,-2.8 -2,-0.6 2,-0.6 -0.920 18.7-136.6-113.4 135.4 17.7 19.3 24.9 92 92 A K E B 4 0A 120 -2,-0.4 -88,-0.2 -88,-0.2 -2,-0.0 -0.785 360.0 360.0 -90.2 120.9 15.9 16.3 26.4 93 93 A S 0 0 92 -90,-1.2 -90,-0.1 -2,-0.6 -1,-0.1 -0.466 360.0 360.0 -70.3 360.0 17.4 15.4 29.7